TCONS_00050808 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050808
Unique NameTCONS_00050808
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1577

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050808 ID=TCONS_00050808|Name=TCONS_00050808|organism=Clytia hemisphaerica|type=transcript|length=1577bp
AGCAAAAACAACTACAACTACTGCTACAagtaaagaaaatatcaaaacca
tGGATGGAATGGAAATAAAAGATATGAAGTTAGTGCCATGCACTCAATCT
AAATATGTTGTTCCTGGTCGTGTTACGTTCAATCAGAATGGTCGGCAACG
AAAATGGGATTACGTTAAAGTTCACGATTCGGTATCCATTTTGATTTACA
ACAAGACCAGAGATGCATTTGTGTTGGTAAGACAATTCAGACCAGCACCT
TATCTGAACATCAATtccaaaatgttaaaagaagaagtttcagacattga
aaataaatcaTCTGAAAAGAAAGAATTCAAAACAGTTGCTCCCTTTGAGC
TTGGTGTCACTTATGAATTATGTGCTGGTATAGTTGACCAAAAACGTCCT
CTAGTTGAAATTACAAAAGATGCAATCTCTCAAATGATGGGTTATAACGT
AGAAGAGAAACAAATCAAGCGAATTTATCAGACCAATCATGTTGGATATT
CAGGTGACCGATGTGATATATACATTGTGGAAGTGACAGATGAAATGttg
ataaaagatttcaaaccTGATGCTGATCTcgttgaatatttttatttgtc
aaGGAATGATGCTCAGGAGTTTGCAACGAGTGATGAATACGTGAAAAATA
GTAATGTTATTGCATCTATATTATGGTGTTTCTTGCACAATATCTTTTGA
GCTTGTGGTTGGCTCATAATGTTTCatcattttaaaaagaataatcAAAT
ATGTTTGAGAGATTCTGCCGAAAGATACTTTGTCGACTAAAACCAATAAA
ATCGAAATCTTTCGAAAAATGTTCAAAGTATGCGAGGGGTCTGGAGCCTT
GTTTATATAAAGAGATTTCGCCAAGGACCTTGGAATGGGTTGCAAGTTGA
AAATTGTAAATAAATATCATGCATTTAAATGTTTTGACTTAATTCTACAT
GGGAATCTATCTGGCTTTTCCAATATACAGTGTGtctcaaaaaaagtcaa
aaaaattttatataaactaaaatcctcataatttgtgccaaattttagTC
CACGAATACTTATTTTTCAGTATCAAAAACCTTTGCACTCATCTTTGGGA
ATTTGgatatctattgattgaacagagaattattgtcttatttcaattat
tctatACCCAGTTTAGATgttgagttttgaggattttactgTGTATtaaa
atttgtccgcttttttttgggacacgctgtaaaattaattttagctATTC
TTATTTTTACGTAATAATGATATAGTTTGCAAAACATTGAGATAaacttt
tctcaattttttttcccaAAGAGATATTATATTATGAAGTTTATGTATTG
ACAACATTACTGTAACGACTATTTAATTGCAACAAAGTTGATTTTGATCT
TTTACCAATTGATGTGCATTTATAGGTAATGAATGACGTCAGTTAAATCA
AGATGATGCCAGCACCTTTTCATTAATTACTTCACTCTGTTGTACTATGA
AAAAtctctattttattttatattttagtatttttcgCAGTAATCCTTTG
GTGGGTTATTGTATTTTATATTTGAAT
Run BLAST on NCBI

transcript from alignment at scaffold_189:247720..252652+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050808 ID=TCONS_00050808|Name=TCONS_00050808|organism=Clytia hemisphaerica|type=transcript|length=4933bp|location=Sequence derived from alignment at scaffold_189:247720..252652+ (Clytia hemisphaerica)
AGCAAAAACAACTACAACTACTGCTACAagtaaagaaaatatcaaaacca tGGATGGAATGGAAATAAAAGATATGAAGTTAGTGCCATGCACTCAATCT AAATATGTTGTTCCTGGTCGTGTTACGTTCAATCAGGTAAAAATGACAAT ACAGGATTTGTTTTGTTTCCCATAGTGGTTCATTTATGtctgtttttgta tatttttggatgaaTGAGAtgggatttttaatttttaagtagAGTTATGA TATTTTTCTGTTTAACTTGGCTTTTATCTTTACtcaatttttaaagtttt ctttttttgtcttgAATCGGGATTCTTTCTCTATTTCTCCTCAAAACTTG AAAGATACAAAGGAATGTGTATTGCATTGAAGTTTGGATTTGTATTGTTT GCATTAActcaaaaatttttcttcactCTTTTCTCTTAGAATGGTCGGCA ACGAAAATGGGATTACGTTAAAGTTCACGATTCGTAGGTTTCCTTTCTCT TAAACatagtattcatgatatgcaccctTGCAATGTCTTCACACGTCGCA TTGCGTAATATTACGTAATCTGTTCTTGCCGCCATGTTGGTTTGAATAAA AAATCCGCGGCAAAATAATCAGGTGGCAAATTCAATGTGTTTTGTCTCCC AAACCCTTAAAATACACCCAGACCCCTACCTCTCCTTTCTGGGAACTTGA TATCTCAAAATTCAGATTTTACAAGTCACGTCAAATAACATGAAGATAGC AGGTGCATCCGATATTTCTAAGATATTCTGCACAATGAAAAGAATAAGAA GATTATGATGAATTCTATTGCTTTTTTACCTCAAATGATCGATCTGTGta ccaaataaaaaaagaattcctTTAATCAAAGAACTCGACGGTTGTCCTGG AATAATTAAATTATACTCTTATTTATTAGCACTTACTTTTTCATTATCAT ATAATTTAGGGTATCCATTTTGATTTACAACAAGACCAGAGATGCATTTG TGTTGGTAAGACAATTCAGACCAGGTAAAAGGATTAAGTTCACATAATTT TTACTCTCCCGCAGTGTGATGATGGGTCTTTCCTTTgaatcaaacaaaaa tatacAAACTGGCACCAATTTTGACCTGTTAATACAAACTTGTTGCCATT ATTGTAGGTTTATGCTAACAAATCTAGCTCCTAAGAGGCCTTGTTAAcat aaaaaggtcaaattaGAAAGATACTGTATACACTTCTTAATACTTGGAAC GTTGAACCTTGCGTCAATTTCTTGGTGCGAGCATTGTGGGGCAACTTACT GTCAACCGGATATGCCATTTTATCATAAAGAAAGCCGGTCATGATTAATA ATAGATATAATAGATCTTTTTCACGCGCAATGCTTACCTCGTTTACtaaa tattgctatggtaactAATTGAAGATTCGAAGAGGAGTTCGTGAGAAGTT TACTCtataaacaaaattaacaatTGAAGACTTTCAGAgagtcgttgcac tcaaaatattttatgaaacaaTTAGTTTTTATTACTTGTTTTCGTTCTTA CGTTGATCATCAATCACGATAAAAACCTTCTTCGTGTTCTTGTAATTCCA GCACCTTATCTGAACATCAATTCCAAAATGTTGAAAGAAGAAGTTTCAga cattgaaaataaatcatctgaaaagaaagatttcaaaacagTTGCTCCCT TTGAGCTTGGTGTCACTTATGAATTATGTGCTGGTATAGTTGACCAAAAA CGTTCTTTAGTTGAAATAGCACAAAGTGAAATTGAAGAAGAGACAGGTTA TATTGTCCCTTTGGAAAACATCAAACAAATATTCAGACATACTGCGACAG GACATTCAGGGAATATGGGTACTGCATTTTATGCTGAGGTGACAGATGAC ATGAAAACAGCCAAAGGTGGTGGTGTCCAAGATTCTGGTGAATTCATTGA TCTGTATTACCTACCAAGGACTGATGCTAAAGATTTTGCTCTTGATGAGA GATATGTAAAGCCTTCAAGCTTCATTGCAGCCATAatgtggtttttcatc aatcagcaaaaataaataaaaatgaaaaataatttttatttaagtttcat tttcattttttttgtagtaTTTTGTAATCaatcagtttgaatgataaaaa tcatttttatatttattgGACTGTTAGGGCTTTTCCTCATTTTATTTTCT TCCTTAGAAATACAAtacaataaaatgaaaatgcttttgaTCTTTACCTG TAATTTTTAATTAtagaataaacaaaacaaaacatggAAGAATTAAAAAT CAGTGATATGCAACTGGCTCCTTTTGTTGACTCCGACGAATTACCAATCG GACGCGTTGCTTTCAAACAGGTGAAACCAGTTAATAGTGGGTGTTCATTG AAAAAGGGAAATTATATAAATGCAAATTCTGATAATTATGTCCTaacttt tcaatttatttttcgaaaatccattATCATTACATTAAGAGTTGAATATC TCTTGAACAAAGAGCTTCCATCtttatatttataatttttcgTTACTCCA GTGagacaataaattttgagaattttaatcTGTTCCCACGTTATTCCAAA AACAATCAATctcttattattattatttgacGAAAGTTTTCTTTTAGGTA GATTTACATAGAATTCCCATTTCCGATCAAGATCTCCAAATTTTTATAAA GCTGAtgaaaatcaatgttttttttctttcagaatgGATGCAAACGCCTT TGGGATTACGTGGATTACAAAGATCAGTAAGCACTCGTGACAGCGTAttc cacagatatcttatatgaaacaatagatagagctactctgtatttccctA GCAACAACAGTTGAcgcaaaataatgcgccatcgTTGCTGAAAGTAGACc acagttcggtaccggcaatttgcTCAAGCAAAATCATTGAATTCCAAAGT CTATCGGCGCGAAAATGATTTAATGTCGACTTTTGCATATGATTTTGACG AGATATTTAGCATCATTAGTTTAACATTCGTTCTTTTATCTTAGAATTCA AGCTCTTGTCTACAACAAAACCAGAGATGCTTTTGTTCTACGCAAAGAAT TCAGACCTGGTATGAAAAATGTATTAAATTATAATCGGAAAGTGATGAGA TTGAACAAGTTCCTTTCTTTCTCTCTCCCACTTTCAACGGAATTCGGCAT TTTAGTTGCTGTACATCTTCTTATCCAATCTACAGGGTGTCCTTTTAAAA AAGTACTTTGTCAGACCACTTCTTAGTTCTATAAGTAGAAGAATAATAAG AAGTTTCTTCTAAATACAGATCACAATAATGCAACAATGAAGCACAAAAG GTAGAGATTAACATTGTGATTACCGTAATAAAATAATTAACATTTCATTC AATGAATgtcttttttaaaaaacaattaaagATCGAAGTAATTAAAAAGa gtactttttatatttttgattgtGATACAAAcgcaaatattttttcaata acgATTTTCAGGACACCCTGTAGTGTGAATCCATATCCTTGTACTTTGCG AGTTTGGAGAAATACTCCAGGTAATTTTTTGTCTATTCCTTTTATTTACA GCACCTTATCTGAACATCAATtccaaaatgttaaaagaagaagtttcaga cattgaaaataaatcaTCTGAAAAGAAAGAATTCAAAACAGTTGCTCCCT TTGAGCTTGGTGTCACTTATGAATTATGTGCTGGTATAGTTGACCAAAAA CGTCCTCTAGTTGAAATTACAAAAGATGCAATCTCTCAAATGATGGGTTA TAACGTAGAAGAGAAACAAATCAAGCGAATTTATCAGACCAATCATGTTG GATATTCAGGTGACCGATGTGATATATACATTGTGGAAGTGACAGATGAA ATGttgataaaagatttcaaaccTGATGCTGATCTcgttgaatattttta tttgtcaaGGAATGATGCTCAGGAGTTTGCAACGAGTGATGAATACGTGA AAAATAGTAATGTTATTGCATCTATATTATGGTGTTTCTTGCACAATATC TTTTGAGCTTGTGGTTGGCTCATAATGTTTCatcattttaaaaagaataa tcAAATATGTTTGAGAGATTCTGCCGAAAGATACTTTGTCGACTAAAACC AATAAAATCGAAATCTTTCGAAAAATGTTCAAAGTATGCGAGGGGTCTGG AGCCTTGTTTATATAAAGAGATTTCGCCAAGGACCTTGGAATGGGTTGCA AGTTGAAAATTGTAAATAAATATCATGCATTTAAATGTTTTGACTTAATT CTACATGGGAATCTATCTGGCTTTTCCAATATACAGTGTGtctcaaaaaa agtcaaaaaaattttatataaactaaaatcctcataatttgtgccaaatt ttagTCCACGAATACTTATTTTTCAGTATCAAAAACCTTTGCACTCATCT TTGGGAATTTGgatatctattgattgaacagagaattattgtcttatttc aattattctatACCCAGTTTAGATgttgagttttgaggattttactgTGT ATtaaaatttgtccgcttttttttgggacacgctgtaaaattaattttag ctATTCTTATTTTTACGTAATAATGATATAGTTTGCAAAACATTGAGATA aacttttctcaattttttttcccaAAGAGATATTATATTATGAAGTTTAT GTATTGACAACATTACTGTAACGACTATTTAATTGCAACAAAGTTGATTT TGATCTTTTACCAATTGATGTGCATTTATAGGTAATGAATGACGTCAGTT AAATCAAGATGATGCCAGCACCTTTTCATTAATTACTTCACTCTGTTGTA CTATGAAAAAtctctattttattttatattttagtatttttcgCAGTAAT CCTTTGGTGGGTTATTGTATTTTATATTTGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032187XLOC_032187Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050808-exon-scaffold_189-1491911889:247720..247855TCONS_00050808-exon-scaffold_189-1491911889:247720..247855Clytia hemisphaericaexon
TCONS_00050808-exon-scaffold_189-1510915933:247720..247855TCONS_00050808-exon-scaffold_189-1510915933:247720..247855Clytia hemisphaericaexon
TCONS_00050808-exon-scaffold_189-1575043694:247720..247855TCONS_00050808-exon-scaffold_189-1575043694:247720..247855Clytia hemisphaericaexon
TCONS_00050808-exon-scaffold_189-1491911889:248159..248202TCONS_00050808-exon-scaffold_189-1491911889:248159..248202Clytia hemisphaericaexon
TCONS_00050808-exon-scaffold_189-1510915933:248159..248202TCONS_00050808-exon-scaffold_189-1510915933:248159..248202Clytia hemisphaericaexon
TCONS_00050808-exon-scaffold_189-1575043694:248159..248202TCONS_00050808-exon-scaffold_189-1575043694:248159..248202Clytia hemisphaericaexon
TCONS_00050808-exon-scaffold_189-1491911889:248679..248743TCONS_00050808-exon-scaffold_189-1491911889:248679..248743Clytia hemisphaericaexon
TCONS_00050808-exon-scaffold_189-1510915933:248679..248743TCONS_00050808-exon-scaffold_189-1510915933:248679..248743Clytia hemisphaericaexon
TCONS_00050808-exon-scaffold_189-1575043694:248679..248743TCONS_00050808-exon-scaffold_189-1575043694:248679..248743Clytia hemisphaericaexon
TCONS_00050808-exon-scaffold_189-1491911889:251321..252652TCONS_00050808-exon-scaffold_189-1491911889:251321..252652Clytia hemisphaericaexon
TCONS_00050808-exon-scaffold_189-1510915933:251321..252652TCONS_00050808-exon-scaffold_189-1510915933:251321..252652Clytia hemisphaericaexon
TCONS_00050808-exon-scaffold_189-1575043694:251321..252652TCONS_00050808-exon-scaffold_189-1575043694:251321..252652Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_189supercontigscaffold_189:247720..252652 +
Expression
No biomaterial libraries express this feature.
Blast
BLAST of TCONS_00050808 vs. Swiss-Prot (Human)
Match: NUD14 (Uridine diphosphate glucose pyrophosphatase OS=Homo sapiens GN=NUDT14 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 7.954e-30
Identity = 66/207 (31.88%), Postives = 105/207 (50.72%), Query Frame = 2
Query:   89 CTQSKYVVPGRVTFNQNGRQRKWDYVKVHDSVSILIYNKTRDAFVLVRQFRPAPYLNINSKMLKEEVSDIENKSSEKKEFKTVAPFELGVTYELCAGIVDQKR-PLVEITKDAISQMMGYNVEEKQIKRIYQ-TNHVGYSGDRCDIYIVEVTDEMLI---KDFKPDADLVEYFYLSRNDAQEFATSDEYVKNSNVIASILWCFLHNI 694
            C  S Y+ P  + + QNG Q+ WD++K HDSV++L++N +R + VLV+QFRPA Y     +     ++ ++      +E +   P   GVT ELCAG+VDQ    L E+      +  GY++    ++R+    + VG +G R  ++  EVTD            + +L+E  +L    AQ FA   +  K   VI  + W FL  +
Sbjct:   12 CAASPYLRPLTLHYRQNGAQKSWDFMKTHDSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDG--PRELQPALPGSAGVTVELCAGLVDQPGLSLEEVACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLVEEGELIEVVHLPLEGAQAFADDPDIPKTLGVIFGVSW-FLSQV 215          
The following BLAST results are available for this feature:
BLAST of TCONS_00050808 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NUD147.954e-3031.88Uridine diphosphate glucose pyrophosphatase OS=Hom... [more]
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