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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050812 ID=TCONS_00050812|Name=TCONS_00050812|organism=Clytia hemisphaerica|type=transcript|length=746bp
GGAGTGTTTACTTTTCTATATAAGGATGTATGAATAATACTTCTATGCAC
TATAAAAAAGAGGCAAAGCATTGgtgaaatatcttcaaaaacTGTTCACC
TGCGATAAACCCACTACAACCCTTTTAAAAAGCAcggaaaatatattcaa
aaNGCTGCGATAAACCCACTATAACCCTTTTAAAAAGCAcggaaaatata
ttcaaaatgaagttATCAACTACAGGGATCATCTTTACTGTTCTACTTTT
TACCTGTATGGAAGTGACCAATGCCGGTACTTTATATCAGAACTATGAGG
GTTACAAACTTGGATACGGATGTCATAAAGGCTATTGTTGGGCATATTGT
GATAACTCATGGGTTCATGGAAACAGGGACGGAAAATGGTGTTACACCAG
ACAACAAGGTTTCTATGTGGGTAAAGTGTCATGCTCAAGTTACTGGAGTT
GCtctaataaatttttcaaatgtgtAGGTGCTTGTGGAAACTGAGTTATC
TGGAATCAATCTGTTCTGCTACTTTCCATTAATGTGGTTATCGTAATATC
TAATTAAAGTTttgttaatttgtaatttaggtattatatttcttaatatt
tttgcttatttcCTTATGATTCAGTATCTTGAACTTTCTAGGCTCAGTGA
GCTTTTTTTGGAATAGAGAAAGTATTATAGTCTATATATGCCCTCCCAGC
GGTTTGTGTGAATGCGTggatgggctttttcacttgcgtgaatatg Run BLAST on NCBI transcript from alignment at scaffold_189:319266..321008+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050812 ID=TCONS_00050812|Name=TCONS_00050812|organism=Clytia hemisphaerica|type=transcript|length=1743bp|location=Sequence derived from alignment at scaffold_189:319266..321008+ (Clytia hemisphaerica)
GGAGTGTTTACTTTTCTATATAAGGATGTATGAATAATACTTCTATGCAC
TATAAAAAAGAGGCAAAGCATTGgtgaaatatcttcaaaaacTGTTCACC
TGCGATAAACCCACTACAACCCTTTTAAAAAGCAcggaaaatatattcaa
aaNGCTGCGATAAACCCACTATAACCCTTTTAAAAAGCAcggaaaatata
ttcaaaatgaagttATCAACTACAGGGATCATCTTTACTGTTCTACTTTT
TACCTGTATGGAAGTGACCAATGCCGGTACTTTATATCAGAACTATGAGG
GTTACAAACTTGGATACGGATGTCATAAAGGCTATTGTTGGGCATATTGT
GATAACTCATGGGtaagttttttcttatttatctatttttttatttttct
ttcattcatCAATTTAATCACCATacagtaccgtgaaaagcacaggccaa
aatcatatatggacctgtgccgaccaatcgagattctattcattgcgcaa
tcaacgcagagaaaagtaaccatgacggcaatccaagatttttgatgaaa
ttcaaagttgatatttttaattccgtcgttgaaaacacaacttaaaaatt
tcatcaatgcttttcaaaaagagtcagtgatagagagtCATAACATAAAG
ATCTGCCTATTATTTCCATTCCATTAAAGTAGCATTACCAAaactaatag
tttagtaattaatgttctacatttgggaatcatgtaaaagatttctttcg
aaagaaactcatttcatcAATTAcatttggaggtttctggggaatttgta
aatagtaaactgcatactgatacagtctgctcgACATTAAATAtcgtaat
atttgctcttcatctttgattctttctacagtgattagattgacgtgtcg
atgcgcgataaaattttaTATCATTGGTCCTCAGAGGTtgattatattct
ttgaaaactcaacatCTGATGGTAACAATGCACTATTTCAAAACCAGTaa
catttcaatcaaaacaagatTTGGGCTAtcaatttgattttgaaaagaat
tgGCGGAAgcttaattttaaaaattgttatatattCTTAATTGAAATCAA
TAATATACAAATAATGTGTTCGGCGTCATCCAATAACAACCATCAATtat
acaattcatgatattcatagtgtaatgttttctacggaaataccccggtt
ttaggcagtagtggcaaatttaaactttaaacaAAAGTTGTGTAAATTTG
CCACttctggcaaaaaccggggtctttccgtagaaaacattacgtcatga
atgtcATGAATGCcatgtcatttatttttattatcatttttaatcttCAC
ATTTTTCAGGTTCATGGAAACAGGGACGGAAAATGGTGTTACACCAGACA
ACAAGGTTTCTATGTGGGTAAAGTGTCATGCTCAAGTTACTGGAGTTGCt
ctaataaatttttcaaatgtgtAGGTGCTTGTGGAAACTGAGTTATCTGG
AATCAATCTGTTCTGCTACTTTCCATTAATGTGGTTATCGTAATATCTAA
TTAAAGTTttgttaatttgtaatttaggtattatatttcttaatattttt
gcttatttcCTTATGATTCAGTATCTTGAACTTTCTAGGCTCAGTGAGCT
TTTTTTGGAATAGAGAAAGTATTATAGTCTATATATGCCCTCCCAGCGGT
TTGTGTGAATGCGTggatgggctttttcacttgcgtgaatatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050812-exon-scaffold_189-1491911889:319266..319627 | TCONS_00050812-exon-scaffold_189-1491911889:319266..319627 | Clytia hemisphaerica | exon |
| TCONS_00050812-exon-scaffold_189-1510915933:319266..319627 | TCONS_00050812-exon-scaffold_189-1510915933:319266..319627 | Clytia hemisphaerica | exon |
| TCONS_00050812-exon-scaffold_189-1575043694:319266..319627 | TCONS_00050812-exon-scaffold_189-1575043694:319266..319627 | Clytia hemisphaerica | exon |
| TCONS_00050812-exon-scaffold_189-1491911889:320625..321008 | TCONS_00050812-exon-scaffold_189-1491911889:320625..321008 | Clytia hemisphaerica | exon |
| TCONS_00050812-exon-scaffold_189-1510915933:320625..321008 | TCONS_00050812-exon-scaffold_189-1510915933:320625..321008 | Clytia hemisphaerica | exon |
| TCONS_00050812-exon-scaffold_189-1575043694:320625..321008 | TCONS_00050812-exon-scaffold_189-1575043694:320625..321008 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_189 | supercontig | scaffold_189:319266..321008 + |
Blast
The following BLAST results are available for this feature:
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