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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050950 ID=TCONS_00050950|Name=TCONS_00050950|organism=Clytia hemisphaerica|type=transcript|length=1564bp
ATTGTTGATGTTTTTCGCACGGCCTAGCTCAATAATGATTCTATGTTGAG
CCAAAACTGTGTCCTGGACAAGTTTTTGAAAGCCAGGAGCAGGGTCAGTA
CGAATGGTTGCAGAGGGACCGTCTAAAGGAATTAATCCAACACAAAGCTG
AATCAACCCATTACGTAAGTTAATGTGTTCCTCACTGTCTATGATACATG
CAAGAGTGTATGATGTGACGGACTCTCGCAGGACAAGTATGAACTGTTTT
TCACGTCGAAGAACATCACCGGCAAAGGATAATCCGATGGCTGGGGGAGG
GTCGGATGTCGTGGATGGAGCTTCCAGAGAGCTGTGGTCAATCTTCTTGA
GTGAGAAGCAGGTATGACAATTCTCACAGGTGGCACGGAGAGCTGAGTCA
ATATCGAGGGCGAAGAAATACCTTGAGAAGATTTTCTTCAGTTGAAACTG
CGTGGGATGGACTAACTTGATGTGAAGGGCGGTAAGCAATCCAGGCAGGA
CCTTTCGTAGAACAACGATACGTTCTTTGACGGGGGCAAATGCCTCTTTG
TGTGGAACAACTAACAAACCATCTCGAGAGATTGTACAGTTCTGAATATA
GCGTTTCGTGTCCTTAATGTTAGTCAGTTTCTTTGAAGGACGAGTACCCT
GTTTAAGGTAGGCATGGCAACGTCGAAGGTCTTGGCAACCAGCTTGAAGT
GAAATCCATGCAGGTCGATTGACAAATGGCATTTTGGAGGTTCCTGCTGT
GATGTCAtcaatgtttattttcaatACCGAAGCGGATTGTAACTCGTTAA
CGAAGGAACAGATCTGGCAAGAAGTATCGAGGCATTCAGCTGCGTTGCGC
GACTGGAAGTCTGATGGTACATTTGTGCTACCAGCCAGGTGTTGGAGCTG
GGCGTTGAGACGACTGGCTGCAGAGAGAAAGGTGGTTAGGCGATTACTGT
GGGCGAAGTCTCCTCTAAGTAGACGCTGATGTGCTTGAACACAGGGTTGG
CTGTCGGTTAGTACAGAGATTTGATGCTTGGACTGTATGATGTACGGACT
GAAGTGGAGTAGAGACACATCAATACTTAAGGCTTCGATTTCGCATGGGA
TCTATGAGATCTGACGTTCCTTCAACTTGGCACTGAAATATCCAGCAATC
TTTAAGGAGCCGTTACGCTGTACGTACAGGGTTGAACCGATACGGGGAAG
TTTTTCTGCGCCATCTGTGACAATCCACAGTTGGTCATCTGGTTGAGGGA
TGGTGATTGAACGGTTGTTGTGTAGATGTAACTGGGAATCACGAAAAACT
TGAAGGAGCATCGGTCCAGTTAAGAACGTCGGTGGAGGCTTTGCCAGCAA
CTAATGATTCTAACGGTGCGAGGTAGGTCGAGCAATTTGGGATGACACGT
GATAGAAACTTGTAGGCACCCAAATCGGATCGTAAGCCTTTAACTTTATC
AGGGCGAGCACAGGCGGAGAGAGTAGAAATACGATGTGATGAGGCTTTCA
AGGTTCCTTCTGACCATATCCAACCGAGAATGGTGGCGGACTTGGGAGCA
ATAACGGTCTTGCG Run BLAST on NCBI protein sequence of TCONS_00050950-protein >TCONS_00050950-protein ID=TCONS_00050950-protein|Name=TCONS_00050950-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MPFVNRPAWISLQAGCQDLRRCHAYLKQGTRPSKKLTNIKDTKRYIQNCT
ISRDGLLVVPHKEAFAPVKERIVVLRKVLPGLLTALHIKLVHPTQFQLKK
IFSRYFFALDIDSALRATCENCHTCFSLKKIDHSSLEAPSTTSDPPPAIG
LSFAGDVLRREKQFILVLRESVTSYTLACIIDSEEHINLRNGLIQLCVGL
IPLDGPSATIRTDPAPGFQKLVQDTVLAQHRIIIELGRAKNINN Run BLAST on NCBI transcript from alignment at scaffold_19:338395..339958 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050950 ID=TCONS_00050950|Name=TCONS_00050950|organism=Clytia hemisphaerica|type=transcript|length=1564bp|location=Sequence derived from alignment at scaffold_19:338395..339958 (Clytia hemisphaerica)
CGCAAGACCGTTATTGCTCCCAAGTCCGCCACCATTCTCGGTTGGATATG
GTCAGAAGGAACCTTGAAAGCCTCATCACATCGTATTTCTACTCTCTCCG
CCTGTGCTCGCCCTGATAAAGTTAAAGGCTTACGATCCGATTTGGGTGCC
TACAAGTTTCTATCACGTGTCATCCCAAATTGCTCGACCTACCTCGCACC
GTTAGAATCATTAGTTGCTGGCAAAGCCTCCACCGACGTTCTTAACTGGA
CCGATGCTCCTTCAAGTTTTTCGTGATTCCCAGTTACATCTACACAACAA
CCGTTCAATCACCATCCCTCAACCAGATGACCAACTGTGGATTGTCACAG
ATGGCGCAGAAAAACTTCCCCGTATCGGTTCAACCCTGTACGTACAGCGT
AACGGCTCCTTAAAGATTGCTGGATATTTCAGTGCCAAGTTGAAGGAACG
TCAGATCTCATAGATCCCATGCGAAATCGAAGCCTTAAGTATTGATGTGT
CTCTACTCCACTTCAGTCCGTACATCATACAGTCCAAGCATCAAATCTCT
GTACTAACCGACAGCCAACCCTGTGTTCAAGCACATCAGCGTCTACTTAG
AGGAGACTTCGCCCACAGTAATCGCCTAACCACCTTTCTCTCTGCAGCCA
GTCGTCTCAACGCCCAGCTCCAACACCTGGCTGGTAGCACAAATGTACCA
TCAGACTTCCAGTCGCGCAACGCAGCTGAATGCCTCGATACTTCTTGCCA
GATCTGTTCCTTCGTTAACGAGTTACAATCCGCTTCGGTattgaaaataa
acattgaTGACATCACAGCAGGAACCTCCAAAATGCCATTTGTCAATCGA
CCTGCATGGATTTCACTTCAAGCTGGTTGCCAAGACCTTCGACGTTGCCA
TGCCTACCTTAAACAGGGTACTCGTCCTTCAAAGAAACTGACTAACATTA
AGGACACGAAACGCTATATTCAGAACTGTACAATCTCTCGAGATGGTTTG
TTAGTTGTTCCACACAAAGAGGCATTTGCCCCCGTCAAAGAACGTATCGT
TGTTCTACGAAAGGTCCTGCCTGGATTGCTTACCGCCCTTCACATCAAGT
TAGTCCATCCCACGCAGTTTCAACTGAAGAAAATCTTCTCAAGGTATTTC
TTCGCCCTCGATATTGACTCAGCTCTCCGTGCCACCTGTGAGAATTGTCA
TACCTGCTTCTCACTCAAGAAGATTGACCACAGCTCTCTGGAAGCTCCAT
CCACGACATCCGACCCTCCCCCAGCCATCGGATTATCCTTTGCCGGTGAT
GTTCTTCGACGTGAAAAACAGTTCATACTTGTCCTGCGAGAGTCCGTCAC
ATCATACACTCTTGCATGTATCATAGACAGTGAGGAACACATTAACTTAC
GTAATGGGTTGATTCAGCTTTGTGTTGGATTAATTCCTTTAGACGGTCCC
TCTGCAACCATTCGTACTGACCCTGCTCCTGGCTTTCAAAAACTTGTCCA
GGACACAGTTTTGGCTCAACATAGAATCATTATTGAGCTAGGCCGTGCGA
AAAACATCAACAAT Coding sequence (CDS) from alignment at scaffold_19:338395..339958 >TCONS_00050950 ID=TCONS_00050950|Name=TCONS_00050950|organism=Clytia hemisphaerica|type=CDS|length=732bp|location=Sequence derived from alignment at scaffold_19:338395..339958 (Clytia hemisphaerica)
ATGCCATTTGTCAATCGACCTGCATGGATTTCACTTCAAGCTGGTTGCCA
AGACCTTCGACGTTGCCATGCCTACCTTAAACAGGGTACTCGTCCTTCAA
AGAAACTGACTAACATTAAGGACACGAAACGCTATATTCAGAACTGTACA
ATCTCTCGAGATGGTTTGTTAGTTGTTCCACACAAAGAGGCATTTGCCCC
CGTCAAAGAACGTATCGTTGTTCTACGAAAGGTCCTGCCTGGATTGCTTA
CCGCCCTTCACATCAAGTTAGTCCATCCCACGCAGTTTCAACTGAAGAAA
ATCTTCTCAAGGTATTTCTTCGCCCTCGATATTGACTCAGCTCTCCGTGC
CACCTGTGAGAATTGTCATACCTGCTTCTCACTCAAGAAGATTGACCACA
GCTCTCTGGAAGCTCCATCCACGACATCCGACCCTCCCCCAGCCATCGGA
TTATCCTTTGCCGGTGATGTTCTTCGACGTGAAAAACAGTTCATACTTGT
CCTGCGAGAGTCCGTCACATCATACACTCTTGCATGTATCATAGACAGTG
AGGAACACATTAACTTACGTAATGGGTTGATTCAGCTTTGTGTTGGATTA
ATTCCTTTAGACGGTCCCTCTGCAACCATTCGTACTGACCCTGCTCCTGG
CTTTCAAAAACTTGTCCAGGACACAGTTTTGGCTCAACATAGAATCATTA
TTGAGCTAGGCCGTGCGAAAAACATCAACAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050950-exon-scaffold_19-1491911889:338395..339958 | TCONS_00050950-exon-scaffold_19-1491911889:338395..339958 | Clytia hemisphaerica | exon |
| TCONS_00050950-exon-scaffold_19-1510915933:338395..339958 | TCONS_00050950-exon-scaffold_19-1510915933:338395..339958 | Clytia hemisphaerica | exon |
| TCONS_00050950-exon-scaffold_19-1575043694:338395..339958 | TCONS_00050950-exon-scaffold_19-1575043694:338395..339958 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_19 | supercontig | scaffold_19:338395..339958 . |
Blast
The following BLAST results are available for this feature:
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