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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050916 ID=TCONS_00050916|Name=TCONS_00050916|organism=Clytia hemisphaerica|type=transcript|length=536bp
ATGTCTATTCGAGTTATGACTAAAACAACGTCTACAGCAAGTACTACATT
GTTTAAAACATCTCAAATGCTTTTggatatatttatttcaaccaatcaaa
tgatTTGTATACGTTTTGACTAAGGATACAGTGAAATTATCATCGAAGAA
AGACAACCTGTCTTGTTGAGTAGCTAACAGCACCTACTGATGGAATTCAC
TCGAAATCGAAAAGatggacaatttttttcaaatagggAACAATTTTCCT
TGGTAGAGGATGCCTTGAGCTGGACAAACACTCAATCAGTTGGAACCATG
TGGTACAACTCTGGGAGTTCAAGAATACTAAAATCCCAGGGCTTTATACA
TGATCAAATTAACAAGAGAACACATCGACTAAACATGATGAACGTTTAAA
CTTGCAGCTCAGtgGCTGACggatacatttttgaaaagtgagAAAACGGA
GGCACCTACACCTGGCTTGCAAAGGAGGAAAGGAAAAAGGACCTGGCTAT
TCAAACTGTTGAAAGGTTGCATGCAAACTACAGGTT Run BLAST on NCBI transcript from alignment at scaffold_19:374346..377610- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050916 ID=TCONS_00050916|Name=TCONS_00050916|organism=Clytia hemisphaerica|type=transcript|length=3265bp|location=Sequence derived from alignment at scaffold_19:374346..377610- (Clytia hemisphaerica)
ATGTCTATTCGAGTTATGACTAAAACAACGTCTACAGCAAGTACTACATT
GTTTAAAACATCTCAAATGCTTTTGGATATATTTATTTCAACCAATCAAA
TGATTTGTATACGTTTTGACTAAGGATACAGTGAAATTATCATCGAAGAA
AGACAACCTGTCTTGTTGAGTAGCTAACAGCACCTACTGATGGAATTCAC
TCGAAATCGAAAAGATGGACAATTTTTTTCAAATAGGGAACAATTTTCCT
TGGTAGAGGATGCCTTGAGGTATGTATATCTGAAGTTTCTAGTGTGGTCT
GGCTCTTTTCACTGTGGTCTGGCTCTTTGAGTTCAGGCCATTTTTAAATT
TCATGTATTCAACCATCGACTAGGTAGTTCTTCCAGTTCTTGTGTTCTTT
CACTTTGTTTACGTAATCAGCTAAAAGTTGGCGGTTAATTTCGAAAAGTT
TGCTTCTTGGTAATACTGAAGGAAGAGATGGAAGAATAATTTGAATTTCG
TCGCAAACAAACAGCTGCCTTTAATAGTAAAGTAGTCTAGATTATTATGC
GGCCAGTGCGTGATATGATAAGCCGATTCATCATAAAAAGTAAGACTGTA
GAAAACTTAAAGAGACAGCTTCTTTTAAAGATGCTTTCAATGCTTTGGGA
GTTGATATTACTGATGATGCTGTTGATGTTCATCCTGAGAAAATCTGTGA
AAAGTGTAGAGTTGTTTGTACGAGTTTGAATCAGCATTGAAAGGCACCCA
GAGGCACCCAAGCTGAAAGTAGGAAAATAGAAAAAGCTAGGCATAAATCA
ACACAGTATGTATAAAATAACAACAGCATCAGATATTGATACCAGTGGAT
TCGCAGATTGTGTTGATGGGGAGAAAATTTCAGAAATTAAAGATAAGAAG
AGACCGTGGCTTTGTCTAATTATTGATGCTGAAGACTTTATATTTGTTAT
TGATTGTTTTTTTTTTGAATTGGGTGAAATAAATGAGGAAATCAATTANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGAGGAAATACCTT
AAATGATATCAATGATGATTTGTTTGAAATATTTATCACTACCAGGTGTT
GAAATTCAAAAAAAATGATTGAAATTATATGGTCTAATAGACCTTTTCAT
AAATTACGTCACGAACATCACTTGCCTCGTTTTGAAGTTATTGCCATGGT
GATTAACTCCCAGCGGATTTTATTAAAACTACTTTCTATTCATAAAAAAT
CATTTAATGTCTCAAGGGATAAAATCACTGTGGAAACTGTTTGAATACGA
GGCAAGTGATGTTCGTGACGTAATTTATGAAAAGGTCAATTCCTTTCCTT
TTAGCTGGACAAACACTCAATCAGTTGGAACCATGTGGTACAACTCTGGG
AGTTCAAGAATACTAAAATCCCAGGGCTTTATACATGATCAAATTAACAA
GAGAACACATCGACTAAACATGATGAACGTTTAAACTTGCAGCTCAGGTA
ACTTAGATGATTACCATATTAACTCAAAAAAAGTGCCTATATGTTATCTA
ATCAGGCTAGGTAAATTTGAGAATTAGGTTTGTCTGAAATAAAATGGCCT
TTTTATGACAATAAAAATCCCATGATATGTACNTCTGAGAATTAGGTTTG
TCTGAAATAAAATGGCCTTTTTATGACAATAAAAATCCCACGATATGTAT
TCAGGTATTCAGTTGTTGTCAATGACATTGAAATGACTATAGCTACAAGT
CTGGTCTCGATAATTTTAGTTTGATGACTAGCTTGATATAAGTACAGAAA
TTTTGAATAATTTTTCTGGGCTCAACATCAAAACTTCTTGAGTGGCTTTT
TCAGCAGTGAAACACAAATATTGAAGGTTTGAATGGTGACAAAGACTCTA
GCTTAATTTCATTATTTGTCCTGGATTCCTTTTGAAAGTTACTTCATTTT
TATTTTAGTGTCTCAGTACAAGAGTCATGCTCTTCAGTATCAAAGGCAAG
CCCAAAACTAGAGGTACACAAAAGTTTGTCAGGATCTGCGACAAAATTTT
TGTTTGCCTAAATGGACAGTATCCTAACCAAGATATGGCAACAAGAAAAC
CGGCAAAATCTGCTCTCAGACAGTACACAGAAACAAAAGACAAATGTTTT
GAGGTAATTTTTATCCTATATTTTTCAACGGGATTAGTTTTTGTAGGTAT
TCTCACTAGCTGCTAGTTCCCTTCAAGGGTTAGGTGTTACTATATCCAGA
TAATTCTACTCCATACAATATGTGAATTGAAATAAAATACATCTCATGAT
TTTAAAGAGGCATTTCTTTTTATTAGAGATAATGTTGACATGAAGGTTCA
CTTGTGTGTTGTGACCAAATTATAACTTTTTATTATTTTAGTGGCTGACG
GATACATTTTTGAAAAGTGAGAAAACGGAGGCACCTACACCTGGCTTGCA
AAGGAGGAAAGGAAAAAGGACCTGGCTATTCAAACTGTTGAAAGGTTGCA
TGCAAACTACAGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050916-exon-scaffold_19-1575043694:377342..377610 | TCONS_00050916-exon-scaffold_19-1575043694:377342..377610 | Clytia hemisphaerica | exon |
| TCONS_00050916-exon-scaffold_19-1575043694:375364..375506 | TCONS_00050916-exon-scaffold_19-1575043694:375364..375506 | Clytia hemisphaerica | exon |
| TCONS_00050916-exon-scaffold_19-1575043694:374346..374469 | TCONS_00050916-exon-scaffold_19-1575043694:374346..374469 | Clytia hemisphaerica | exon |
| TCONS_00050916-exon-scaffold_19-1510915933:377342..377610 | TCONS_00050916-exon-scaffold_19-1510915933:377342..377610 | Clytia hemisphaerica | exon |
| TCONS_00050916-exon-scaffold_19-1510915933:375364..375506 | TCONS_00050916-exon-scaffold_19-1510915933:375364..375506 | Clytia hemisphaerica | exon |
| TCONS_00050916-exon-scaffold_19-1510915933:374346..374469 | TCONS_00050916-exon-scaffold_19-1510915933:374346..374469 | Clytia hemisphaerica | exon |
| TCONS_00050916-exon-scaffold_19-1491911889:377342..377610 | TCONS_00050916-exon-scaffold_19-1491911889:377342..377610 | Clytia hemisphaerica | exon |
| TCONS_00050916-exon-scaffold_19-1491911889:375364..375506 | TCONS_00050916-exon-scaffold_19-1491911889:375364..375506 | Clytia hemisphaerica | exon |
| TCONS_00050916-exon-scaffold_19-1491911889:374346..374469 | TCONS_00050916-exon-scaffold_19-1491911889:374346..374469 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_19 | supercontig | scaffold_19:374346..377610 - |
Blast
The following BLAST results are available for this feature:
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