TCONS_00051013 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051013
Unique NameTCONS_00051013
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1505

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051013 ID=TCONS_00051013|Name=TCONS_00051013|organism=Clytia hemisphaerica|type=transcript|length=1505bp
CGAAACCCAGGTCGATACATTTGCTGTCTTCCTCTACACACCCCCAGTTG
AAATTCAGTTTGTAATTGAAAACGAAACAGAAAAGTCACATTTGAAAATG
GCATCTACTGAACCACTTAGAGTTTGTGTCACAGGAGCAGCTGGTCAAAT
TGCTTACTCCCTCTTATATAGCATCGGTAATGGAGATGTCTTTGGTAAAT
CTCAGCCAATTACCTTACTCTTATTGGATATCCCACCAATGATGCCAGTC
TTGGAAGGAGTTGTAATGGAATTACAAGATTGCTCTCTTCCCTTACTTCA
TGAAGTCGTTGGAACTGCTGATCCAAATGTCTCATTCAATAATGTTGATG
CTGCCATCTTGGTTGGTGCTATGCCAAGAAGAGAAGGAATGGAAAGGAAA
GATCTTTTGAAAGCTAATGCTAAAATCTTTGAAGACCAAGGAAAGGCTCT
TGATCAATACGCAAAGAAGACGGTCAAGattttggTTGTAGGAAACCCAG
CAAACACTAACTGTCTGATCGCTTCCAAATGTGCACCAAGTATTCCAAAA
GAAAATTTCTCATGTCTCACAAAATTAGATCAAAACAGAGCTATTTCACA
GGTTGCAATGAGACTCGGTATCAAAACATGTGACGTCAGCAAGGTTATCA
TTTGGGGAAACCACTCATCCACACAATACCCTGATGTTCAACACGGGTTC
GTCAATCTGAACGGTCAAGCAGTCCCAATTACTGAGGCTGTTAAAGATGA
TAATTGGATTCAAGGAGAATTCTTAAGGACTGTTCAAACGCGTGGTGCGG
CCATCATAAAAGCGAGAAAATTATCAAGTGCCATGTCCGCTGCGAAAGCC
ATTTGTGACCACATGCGCGTTTGGTGGTTCGGAACCGCCGAAGGTGAATA
CATGAGCATGGGTGTTATCACTGACGGCACACATTACGGAATCCCTGAAG
ATATCGTTTATTCTTTCCCACTGACGATCGGTGCGGGCCACAAATACACA
ATCGTCGATGGTTTAGAAATCAATGCCTTCTCTCGGCAAAAGATGGATCT
CTCAGCTAAGGAATTAGTGGAGGAAAGAGATGTCGCGTTAGCGTTCTTGA
AAAAGGAATGAGTTAAAAATGGTAATATGTATAGTTCGGTGGACTTTGTA
GTAAacttctttttagaaaaaatgaaatctttGTCTGCgtaaattttttt
gtatttagaATTCTTAATGTTGCTCGTTTTTAATACAAATTGACGGTTGT
AAAATGCATGCTAAGTTTATGAGATGTACAATGAATATTAAAGTACTAAT
AACATAATATCTTCTAATCAAGTTTTGATGGTTAGGTGGTATTACTTACT
AACACTGTTTAAATTTCGTTTactataaaatttgaattttatttatcTAA
CGTTATGCATTTTACACCATTGGAATCTTTTTAGTTTTGTAAagtcttta
tttttaaaatacctctGATTAAAAAAATGTGCATAAATAAAATGCTGATA
CAGAT
Run BLAST on NCBI

transcript from alignment at scaffold_192:45588..53254-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051013 ID=TCONS_00051013|Name=TCONS_00051013|organism=Clytia hemisphaerica|type=transcript|length=7667bp|location=Sequence derived from alignment at scaffold_192:45588..53254- (Clytia hemisphaerica)
CGAAACCCAGGTCGATACATTTGCTGTCTTCCTCTACACACCCCCAGTTG
AAATTCAGTTTGTAATTGAAAACGAAACAGAAAAGTCACATTTGAAAATG
GTAAGATTCTTTTTATTTTCGTTTGATTTTTCTTGATAAAAAACTGGACA
GTTTGCGTTTACAACCCACGATATGGCCAGAAAATAACTCAAACAATTTT
GGTTTTTGTTTGGGCCAACAGCAAAACATTCTTTTGGTCCAAATATTGAT
GTTTTATGTCCAAGTTTGGGTCACAAAAAGTTTTATTTTTAACTCCAAAA
GCCCAGCCCAAACACGTCTCAACACGAATATACACAGACCAGTTCAGACC
ATAAAATATGACCCATATAAACACGCACACAAAACTTTTGAAATTTTCGC
CTCTGAATGAAAAACTACTAACTTAACCAGGCTGGGTTCAGGACTTTTTC
AAGTTCAAAATCCCCAAGGGGTTGTGGTTGTGGGAATCATATGACGTTTT
GCTTTTCTGCTTCTTTTGCACCTTCATCTTCCCATTGGGCTATTCCATTT
TTAAACCATACAGGGGTATTGACGAACTTTTCCAGGGGGGTCTGAGCCTT
GATTTTCCAGGGGGTTCTCTCCTCCTAAACTGGCATCAATAGACCTTTTC
GCCTTTCCGTCCGCCATCTTGAATTGTATGCAAAAATACAGGAACAAAAA
TGTCGTGGTTGGATTTAGTTGAAATGTATGCAAAACATATGCAAGTTTAC
ACAAAGATTAAAAAGACAACAAAGCATCTTATAAATAAATATTATAATCA
TTANGGCCGATGGCTTTTTCCTTTTTCACAAAATTTCACTTTCCATCCAG
GCGTGTCGACCTAATTTTCCAGGGGATAGTTTGTTATCCAAAATTTCCAG
GGGGGTTAGTGAAAAAAGTTTGTCAATACCCCCTGTATAATTTTTTTTTG
GAATAGCCCAATATTGTATTTGAATTTTCTGGATTTTTCAATTTTTGGTT
TAAATTTTTTTAAACAATCAGCACTCAGGAAGGTCAAAGTTTGCCAGAGG
ACATGGTCCATCAGATGACATAGGTGTGTCGCCCTATTTGGTCAGAAAAA
TAAAAAATAAATATAAAAACTCTTTAAAAAAGTTATTTTTAACTTCCTAC
GAATTTCCATTTTATTTATTACAAATTTGGCTTCGAAAACACTATTTGAT
ATTCCCTGGAGCAGCACAAACTTGTTGAACTGAATTGGGTTATAAAACTG
ATCAAACACTCACGATTTTTTACAAAATTTCAATTATTGATTTATTACTG
TGAGATCGGGTAACTTGCATCAGTGGAGGCTAACATGCATTGCCATCAAA
TGAGTGACCAATCAAAGCAGCAAAATTTCAAAACAAATGAACTACACAGC
TCCGCTCGCAATCTACTCTACCATTTTTGTTTTGATTTAACTTTGTATTT
TATTAAGTCATTCATTTGAGGGCTATGCATGTTTGCCTCCAATGATGCAA
GTTACCCGATCTCACGGTAAATGTCAAGAGTTGGGTCAAGCTTGATTTAA
AGATTAGTTCAATAAGTTTGATTGATCGTGACTTCACTTTTTTTATAGGC
AAAAGCTTGTTAATCCTCGTTAATCCTGGGTCAGAGCAGGATTAATATTT
GGCCAATTTAATCAGAATTTAATCCAGATTTAAGCCTATTTTTTTTCGAA
CAACTGACGATTCTGCATTAATCGGCGCTAACAGGCGCTAATCGAGATTT
AATCGAAAATTAAGCTAATCGGCCGCTAATCCACTTTTGAACAACCGTGC
CCTTGACAATAAAAATTGAGTTTTGAATTCTTTTATATTTCAGGCATCTA
CTGAACCACTTAGAGTTTGTGTCACAGGAGCAGCTGGTCAAATTGCTTAC
TCCCTCTTATATAGCATCGGTAATGGAGATGTCTTTGGTAAATCTCAGGT
TGGTCTTATTGATTATTTTGTTATAATAGAAAGTTTTAACATTTTAAATT
GATGTTGATACTTCATATCAATCAAATAATCCTGTTCTAAGCAATGATCA
GTCTACATCATTCTCCATACCCTCAAGAGAGTCAAAAAATATTGTGTCTG
ATATTTCCCTGTTCTCTTTTTATTCTAGCCAATTACCTTACTCTTATTGG
ATATCCCACCAATGATGCCAGTCTTGGAAGGAGTTGTAATGGAATTACAA
GATTGCTCTCTTCCCTTACTTCATGGTAAGTTCAGCCATCGTTATCATCA
AAAATTAAGAATTGTTTTTATTTATTTACTAAACAGTTGGTTGACAAGTC
TTTGGCATTCGATTTTTTTTGTGAAATGGTTTGGTTTTTAATCTCTCTTC
TCCTAATTAGAATTCTTCAATTTTACTAAAATAACAAGAGAATTTTGAAG
GAGAGTTTTTGGTATTTATCGTAATCTGTTTAATGTTTATTATTTGTAGA
AGTCGTTGGAACTGCTGATCCAAATGTCTCATTCAATAATGTTGATGCTG
CCATCTTGGTTGGTGCTATGCCAAGAAGAGAAGGAATGGAAAGGAAAGAT
CTTTTGAAAGCTAATGCTAAAATCTTTGAAGACCAAGGAAAGGCTCTTGA
TCAATACGCAAAGAAGACGGTCAAGGTACATTTTTCTTTACTTCCTCTTC
CCATGATAAATGTAAACAACATTGTGACAAATTGCACTTCTTGTTTGTTG
GCCACAATATCCTTCCTCTATTCTTGAACAACAAGATTCGAACTCCTCCC
TAGTAATGCCCCTCTTCAGCCCCTCTCAATCCCCGATCAAATTTCAATAT
TTTCTTAACTTTTTTTAATGGATATGTTGTAAAAGATTTTTTAGAATGTA
ACCGTCAATTCTTTTCATTTCATTTAAAAAATATTTTACCTGTAAGTTAA
TTAATTTAATGTTTCTTACTTTTTCTTTAGATTTTGGTTGTAGGAAACCC
AGCAAACACTAACTGTCTGATCGCTTCCAAATGTGCACCAAGTATTCCAA
AAGAAAATTTCTCATGTCTCACAAAATTAGATCAAAACAGAGCTATTTCA
CAGGTAATTTCGTTATCTGGGTTCAAGATTTAGAAGATTATGAAATTTTA
TTAAAAGCATAATACGTTAGACAGTTTTTGGGCCGTTCAAAACTTGCTTT
ATTAAATTTGTTTTGTTACAAAAAAGAAAAAGTATTCTTGCTCTAGAGAA
TCTATCATCTTAAATGTCTAGAACTACAGGTCTACTGTTTCACCAGAAAT
AGACTTTATAGAACAATGTTTGATTTCAGGTTGCAATGAGACTCGGTATC
AAAACATGTGACGTCAGCAAGGTTATCATTTGGGGAAACCACTCATCCAC
ACAATACCCTGATGTTCAACACGGGTTCGTCAATCTGAACGGTCAAGCAG
TCCCAATTACTGAGGCTGTTAAAGATGATAATTGGATTCAAGGAGAATTC
TTAAGGGTACATAAGCTGTTCGTTCATATTTTATCTGTCCTCCTAAGACT
GCCTAAGACACAATAGCGAGTTTATGTATTCGAGATAAATCGAGGGGGCG
GTACAAAGCAAAGTTGACATGGGGCCGAAATCACCGTCCACTTTGCTCGA
CGAGGTTAAAAACACCAAGATACCGTCGTCTGTTAAGGTGAGCAAAAGCG
ATATAGAGCCGAACATCAACAATCGACTTTGTTTTGTATCGATTTCAACT
ACCGTCGCCCTCGATATCCTCCGATACATAAACTCGGTAATAAAAGAAAC
AGAAACTTAATTCTCCACAATGTCATGATAGAGAAAGTTTATGCATGAAG
AGAATTAAAGTGTGATATGAAATCCGATCCTCAAATCACATCTTTAAAAA
AACATATTTCATATGACACATTTAATAATCCTGCATAACTTCCTGTTTTT
ATAGACTGTTCAAACGCGTGGTGCGGCCATCATAAAAGCGAGAAAATTAT
CAAGTGCCATGTCCGCTGCGAAAGCCATTTGTGACCACATGCGCGTTTGG
TGGTTCGGAACCGCCGAAGGTGAATACATGAGCATGGGTGTTATCACTGA
CGGCACACATTACGGAATCCCTGAAGATATCGTTTATTCTTTCCCACTGA
CGATCGGTGCGGGCCACAAATACACAATCGTCGATGGTTTAGAAATCAAT
GCCTTCTCTCGGCAAAAGATGGATCTCTCAGCTAAGGAATTAGTGGAGGA
AAGAGATGTCGCGTTAGCGTTCTTGAAAAAGGAATGAGTTAAANACTTGC
TTTATTAAATTTGTTTTGTTACAAAAAAGAAAAAGTATTCTTGCTCTAGA
GAATCTATCATCTTAAATGTCTAGAACTACAGGTCTACTGTTTCACCAGA
AATAGACTTTATAGAACAATGTTTGATTTCAGGTTGCAATGAGACTCGGT
ATCAAAACATGTGACGTCAGCAAGGTTATCATTTGGGGAAACCACTCATC
CACACAATACCCTGATGTTCAACACGGGTTCGTCAATCTGAACGGTCAAG
CAGTCCCAATTACTGAGGCTGTTAAAGATGATAATTGGATTCAAGGAGAA
TTCTTAAGGGTACATAAGCTGTTCGTTCATATTTTATCTGTCCTCCTAAG
ACTGCCTAAGACACAATAGCGAGTTTATGTATTCGAGATAAATCGAGGGG
GCGGTACAAAGCAAAGTTGACATGGGGCCGAAATCACCGTCCACTTTGCT
CGACGAGGTTAAAAACACCAAGATACCGTCGTCTGTTAAGGTGAGCAAAA
GCGATATAGAGCCGAACATCAACAATCGACTTTGTTTTGTATCGATTTCA
ACTACCGTCGCCCTCGATATCCTCCGATACATAAACTCGGTAATAAAAGA
AACAGAAACTTAATTCTCCACAATGTCATGATAGAGAAAGTTTATGCATG
AAGAGAATTAAAGTGTGATATGAAATCCGATCCTCAAATCACATCTTTAA
AAAAACATATTTCATATGACACATTTAATAATCCTGCATAACTTCCTGTT
TTTATAGACTGTTCAAACGCGTGGTGCGGCCATCATAAAAGCGAGAAAAT
TATCAAGTGCCATGTCCGCTGCGAAAGCCATTTGTGACCACATGCGCGTT
TGGTGGTTCGGAACCGCCGAAGGTGAATACATGAGCATGGGTGTTATCAC
TGACGGCACACATTACGGAATCCCTGAAGATATCGTTTATTCTTTCCCAC
TGACGATCGGTGCGGGCCACAAATACACAATCGTCGATGGTTTAGAAATC
AATGCCTTCTCTCGGCAAAAGATGGATCTCTCAGCTAAGGAATTAGTGGA
GGAAAGAGATGTCGCGTTAGCGTTCTTGAAAAAGGAATGAGTTAAANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGTCAATCGTTTAATCATATTTCTTTTATTGAATTTAAAATAGAAA
AACATCTTTTGAATGAACACCTGGCTTTCAAAAGAGAAGAAAGGAAATCT
ATCAACCTGTTATAAGGCATTTCTCCTTATCGCTCCTTTTATTTACTTGA
TTTTTTTCTCTCGCGCCAGATTTAATTCGAGACCCGTGTATTAAAGTGTG
ATATGAAATCCGATCCTCAAATCACATCTTTAAAAAGACATATTTCATAT
GACACATTTAATAATCCTGCATAACTTCCTGTTTTTATAGACTGTTCAAA
CGCGTGGTGCGGCCATCATAAAAGCGAGAAAATTATCAAGTGCCATGTCC
GCTGCGAAAGCCATTTGTGACCACATGCGCGTTTGGTGGTTCGGAACCGC
CGAAGGTGAATACATGAGCATGGGTGTTATCACTGACGGCACACATTACG
GAATCCCTGAAGATATCGTTTATTCTTTCCCACTGACGATCGGTGCGGGC
CACAAATACACAATCGTCGATGGTTTAGAAATCAATGCCTTCTCTCGGCA
AAAGATGGATCTCTCAGCTAAGGAATTAGTGGAGGAAAGAGATGTCGCGT
TAGCGTTCTTGAAAAAGGAATGAGTTAAAAATGGTAATATGTATAGTTCG
GTGGACTTTGTAGTAAACTTCTTTTTAGAAAAAATGAAATCTTTGTCTGC
GTAAATTTTTTTGTATTTAGAATTCTTAATGTTGCTCGTTTTTAATACAA
ATTGACGGTTGTAAAATGCATGCTAAGTTTATGAGATGTACAATGAATAT
TAAAGTACTAATAACATAATATCTTCTAATCAAGTTTTGATGGTTAGGTG
GTATTACTTACTAACACTGTTTAAATTTCGTTTACTATAAAATTTGAATT
TTATTTATCTAACGTTATGCATTTTACACCATTGGAATCTTTTTAGTTTT
GTAAAGTCTTTATTTTTAAAATACCTCTGATTAAAAAAATGTGCATAAAT
AAAATGCTGATACAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032340XLOC_032340Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051013-exon-scaffold_192-1575043694:53155..53254TCONS_00051013-exon-scaffold_192-1575043694:53155..53254Clytia hemisphaericaexon
TCONS_00051013-exon-scaffold_192-1575043694:51307..51411TCONS_00051013-exon-scaffold_192-1575043694:51307..51411Clytia hemisphaericaexon
TCONS_00051013-exon-scaffold_192-1575043694:51030..51126TCONS_00051013-exon-scaffold_192-1575043694:51030..51126Clytia hemisphaericaexon
TCONS_00051013-exon-scaffold_192-1575043694:50630..50805TCONS_00051013-exon-scaffold_192-1575043694:50630..50805Clytia hemisphaericaexon
TCONS_00051013-exon-scaffold_192-1575043694:50202..50324TCONS_00051013-exon-scaffold_192-1575043694:50202..50324Clytia hemisphaericaexon
TCONS_00051013-exon-scaffold_192-1575043694:48696..48872TCONS_00051013-exon-scaffold_192-1575043694:48696..48872Clytia hemisphaericaexon
TCONS_00051013-exon-scaffold_192-1575043694:45588..46314TCONS_00051013-exon-scaffold_192-1575043694:45588..46314Clytia hemisphaericaexon
TCONS_00051013-exon-scaffold_192-1510915933:53155..53254TCONS_00051013-exon-scaffold_192-1510915933:53155..53254Clytia hemisphaericaexon
TCONS_00051013-exon-scaffold_192-1510915933:51307..51411TCONS_00051013-exon-scaffold_192-1510915933:51307..51411Clytia hemisphaericaexon
TCONS_00051013-exon-scaffold_192-1510915933:51030..51126TCONS_00051013-exon-scaffold_192-1510915933:51030..51126Clytia hemisphaericaexon
TCONS_00051013-exon-scaffold_192-1510915933:50630..50805TCONS_00051013-exon-scaffold_192-1510915933:50630..50805Clytia hemisphaericaexon
TCONS_00051013-exon-scaffold_192-1510915933:50202..50324TCONS_00051013-exon-scaffold_192-1510915933:50202..50324Clytia hemisphaericaexon
TCONS_00051013-exon-scaffold_192-1510915933:48696..48872TCONS_00051013-exon-scaffold_192-1510915933:48696..48872Clytia hemisphaericaexon
TCONS_00051013-exon-scaffold_192-1510915933:45588..46314TCONS_00051013-exon-scaffold_192-1510915933:45588..46314Clytia hemisphaericaexon
TCONS_00051013-exon-scaffold_192-1491911889:53155..53254TCONS_00051013-exon-scaffold_192-1491911889:53155..53254Clytia hemisphaericaexon
TCONS_00051013-exon-scaffold_192-1491911889:51307..51411TCONS_00051013-exon-scaffold_192-1491911889:51307..51411Clytia hemisphaericaexon
TCONS_00051013-exon-scaffold_192-1491911889:51030..51126TCONS_00051013-exon-scaffold_192-1491911889:51030..51126Clytia hemisphaericaexon
TCONS_00051013-exon-scaffold_192-1491911889:50630..50805TCONS_00051013-exon-scaffold_192-1491911889:50630..50805Clytia hemisphaericaexon
TCONS_00051013-exon-scaffold_192-1491911889:50202..50324TCONS_00051013-exon-scaffold_192-1491911889:50202..50324Clytia hemisphaericaexon
TCONS_00051013-exon-scaffold_192-1491911889:48696..48872TCONS_00051013-exon-scaffold_192-1491911889:48696..48872Clytia hemisphaericaexon
TCONS_00051013-exon-scaffold_192-1491911889:45588..46314TCONS_00051013-exon-scaffold_192-1491911889:45588..46314Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_192supercontigscaffold_192:45588..53254 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0722493	0.13569	0.00531189	0.251036	0.000188175	0.000932338	0.00124789	1.53709e-05	0.0697289	0.133081	0.429194	0.453109	0.0312717	0.0193272	0.0180994	0.0208203	0.291988	0.348378	1.24682	0.0020226	0.0303085	0.0980592	0.0104898	0.026109	2.14705e-06	2.0868e-07	0.00241785	0.0143726	0.00445154	0.0503747
Blast
[Close]
BLAST of TCONS_00051013 vs. Swiss-Prot (Human)
Match: MDHC (Malate dehydrogenase, cytoplasmic OS=Homo sapiens GN=MDH1 PE=1 SV=4)

HSP 1 Score: 492.656 bits (1267), Expect = 3.977e-172
Identity = 230/331 (69.49%), Postives = 277/331 (83.69%), Query Frame = 2 
Query:  107 TEPLRVCVTGAAGQIAYSLLYSIGNGDVFGKSQPITLLLLDIPPMMPVLEGVVMELQDCSLPLLHEVVGTADPNVSFNNVDAAILVGAMPRREGMERKDLLKANAKIFEDQGKALDQYAKKTVKILVVGNPANTNCLIASKCAPSIPKENFSCLTKLDQNRAISQVAMRLGIKTCDVSKVIIWGNHSSTQYPDVQHGFVNLNGQAVPITEAVKDDNWIQGEFLRTVQTRGAAIIKARKLSSAMSAAKAICDHMRVWWFGTAEGEYMSMGVITDGTHYGIPEDIVYSFPLTIGAGHKYTIVDGLEINAFSRQKMDLSAKELVEERDVALAFL 1099
            +EP+RV VTGAAGQIAYSLLYSIGNG VFGK QPI L+LLDI PMM VL+GV+MELQDC+LPLL +V+ T   +V+F ++D AILVG+MPRREGMERKDLLKAN KIF+ QG ALD+YAKK+VK++VVGNPANTNCL ASK APSIPKENFSCLT+LD NRA +Q+A++LG+   DV  VIIWGNHSSTQYPDV H  V L G+ V + EA+KDD+W++GEF+ TVQ RGAA+IKARKLSSAMSAAKAICDH+R  WFGT EGE++SMGVI+DG  YG+P+D++YSFP+ I     +  V+GL IN FSR+KMDL+AKEL EE++ A  FL
Sbjct:    2 SEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTANDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFVTTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVI-KNKTWKFVEGLPINDFSREKMDLTAKELTEEKESAFEFL 331
The following BLAST results are available for this feature:
BLAST of TCONS_00051013 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MDHC3.977e-17269.49Malate dehydrogenase, cytoplasmic OS=Homo sapiens ... [more]
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