TCONS_00051039 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051039
Unique NameTCONS_00051039
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length438

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051039 ID=TCONS_00051039|Name=TCONS_00051039|organism=Clytia hemisphaerica|type=transcript|length=438bp
TCTCGAAGAAACTGGGGAGGATATTTTTGTGGTTCTTTGAGCAAAAATGG
ACTAATCTTTTAACAACTCAACTCATGAAATCTTGGTGGATCACAACTGA
ATAAAATGAAACACTGtcaagaaaaacactgaaaacatcAAACCTCAAAA
CTGACAAGCATGACCAGctTTAAAGAATTGACCTGGGCATGAATTCAAAG
CTCCAAGATttcaaaatgcagaaattgTTATCAACTGGACGATGGACATG
AAGTGAAATAGAATGAGATTCAAAATACCAATGATGCTTTCAGTGATAAG
ACTGCTGCAGGAGAAAACATAACGCAAGACTTCTATTGTAATGGCTATGG
ATGATTCAGCTTTTGAAATCTTTAGAACAGTCcatgttttaaaatgatat
aTTGTCAGACAATCCAACTCAAACGTTTACGATGAAGN
Run BLAST on NCBI

transcript from alignment at scaffold_193:19900..25135+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051039 ID=TCONS_00051039|Name=TCONS_00051039|organism=Clytia hemisphaerica|type=transcript|length=5236bp|location=Sequence derived from alignment at scaffold_193:19900..25135+ (Clytia hemisphaerica)
TCTCGAAGAAACTGGGGAGGATATTTTTGTGGTTCTTTGAGCAAAAATGG
ACTAATCTTTTAACAACTCAACTCATGAAATCTTGGTGGATCACAACTGA
ATAAAATGAAACACTGtcaagaaaaacactgaaaacatcAAACCTCAAAA
CTGACAAGCATGACCAGGtatgttatttttttaacttttcagttCTATAC
CAGACTCTCCCACTCTATACGATCGATAACTTTTTCCCAACCATTGTTCA
TTGATGACCAATCAAtaactgattgattgattggatATCGACTGATGGTG
ATGGGGAATCGAGCCTGTTCTATAAATAATTTGCTATATCTTTTTTTACC
AATGTTTTGTTCAATGGATAGGCAACCAAACCTCacttctcaaaaattaa
aaaagattatCAAGTAAGTTAATATtcagggaaattttttttcgattttt
cagatGACACCCGCGCAAAAATAAGTTTGAATGGAAATCTGAAAAGGCGG
CCGTCCACATAGAACGTACGCACTAAGAGGGAGggggatcttctcaaaag
ctTGTGCTTTTGACAGGGGGGAGGGGTCAAATGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTACatttctttttgtatttatgacgt
cataattaggtTTTCTTAACCccattcaacctaggcttttagaggcggtt
cagaactaggggaaAACTACGTATTTACTAcaggggtatagccatttgtg
tacgcttgcgtacagggggaggggtactTGATTTTCAACGTCTAGTGTGT
ACGTACTACAGGGACGGCCCCAAGGTCTAAgccgtgaatttttttttaca
aggtgGTATTCCAAAAATCCTGTGTCAGACTTTCTGAAACACTGAGTTGA
GCTGAAGTTAATTCcttttttaagtttaatttttctaaagtttgcagaat
gaattgaaaatgttttcaaaaatatttttcagaggGTCTGAATCCTAAAA
ATGAGAATTTAAGTCAGGAAAccagtttttaaaaaatctaatcaATTCAT
TGCATGCCAAACAACaatttccctgaaaatttcaagtcaaagtCTTTATC
TGATTCTGAGATATTCCTGACAAGGTACCTGCAAACCTGAGAAAAATGTG
GCTGCGTGTTAAAAGGCTGAACGGTGCGATACAACTCAAACGAAATACAA
ACTAAAAGGTCCTCTTCAGCCACAGtacgaaaatcaacaaaaacgtgTTG
CGCTTAAATCAGTaaacaaagcaaattttgtTGTGATCTTGCgaaaacat
aaaatttgggTGAAGACTGCCACAAAACTGTGACAAATTGTTCATTGATA
CACGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNa
acacacttttaagaaacatgaggctcagaatgcctaaaaactaagaaaca
tctgagaaacatgctgaggctgagaatgataaaataacattttttaatcc
aGCCTTATataaggctgattatgtcaaaatgtttagaaacatGTCAGAAA
CATTtcaggctcaaaaggccgatttcttaagaaacattgaggctgcttgg
taaaactagtttcttaaaaaaaaaatacgtgtAGTCCAGGATGACTCTGT
AGCCATAAAAACCTTTCTGGTGCATATTTTCATTCACatagacttgaatt
gacaatgagcTGACTTGACCTAAGGTGGTTATGAGTAGTGGAGAATGTTA
TCTTGAGAAGTTATGTCCAGTTCATTATAATTCACATTTCCATCTTTGTT
ACATCATGTTGTACTTGGATTTATATCTACTACAAACCATTATGTCAGCT
ACTAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTTCT
TTGGAGATGAAACCTTTTTGTTCTAGTTAGGGGATGAAAAGAGTAAGTCA
TACTTTTCATAAAGTAGTGATCTTTAGGTGTGTACATGTAATGGATACCT
TTACTTTCAATCGAagttgttgaaaagatatgagGCACTGTTTGCAAAAT
ATACTATTTAAGATGTACACATAGTAATATATCTTTATctgatatatatt
tttatttcagctTTAAAGAATTGACCTGGGCATGAATTCAAAGCTCCAAG
ATttcaaaatgcagaaattggTATGGTTTTTATTGAACATTTGAATTTGA
GAGTTTAATTGAATTAACTGCACTAATTTGTTTACTATTTATTGGGTGTT
CTGACATTtaaaatccatacagggggtggacaaaacttttcaagcaaaaa
ataataattagttAAAATGGGTACATACTAGATACcccttgaaaatgtca
aaactataaaaaaaaacttggaaaaagttCTTCATACCTTTTAAGTGAGT
GCGCACGGGTTTTAAGATAACTTTTAGCCCCTTGACTTTCCTTAAGCCCC
AGGCTGCCCCAGGGAAAAGTTCGTTTACCcttctgtatggatataaaatg
taaTGGGTCATAGTTTCCTGTTCTGTactataaaaattgaaatttattta
cGAAAATTTTAAAGAGCACGCATATGACACCGCGCTAGTGGTTGCCTCTC
ATCCATACACTTCTTCTTTCATGATACCTGCTTTAACCATTGCCTATTAA
TCAAGCACTTCCGTTTCCATTTCAGTTATCAACTGGACGATGGACATGAA
GTGAAATAGAATGAGATTCAAAATACCAATGATGCTTTCAGTGATAAGAC
TGCTGCAGGAGAAAACATAACGCAAGACTTCTATTGTAATGGCTATGGAT
GATTCAGCTTTTGAAATCTTTAGAACAGTCcatgttttaaaatgatataT
TGTCAGACAATCCAACTCAAACGTTTACGATGAAGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032352XLOC_032352Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051039-exon-scaffold_193-1491911889:19900..20066TCONS_00051039-exon-scaffold_193-1491911889:19900..20066Clytia hemisphaericaexon
TCONS_00051039-exon-scaffold_193-1510915933:19900..20066TCONS_00051039-exon-scaffold_193-1510915933:19900..20066Clytia hemisphaericaexon
TCONS_00051039-exon-scaffold_193-1575043694:19900..20066TCONS_00051039-exon-scaffold_193-1575043694:19900..20066Clytia hemisphaericaexon
TCONS_00051039-exon-scaffold_193-1491911889:24360..24419TCONS_00051039-exon-scaffold_193-1491911889:24360..24419Clytia hemisphaericaexon
TCONS_00051039-exon-scaffold_193-1510915933:24360..24419TCONS_00051039-exon-scaffold_193-1510915933:24360..24419Clytia hemisphaericaexon
TCONS_00051039-exon-scaffold_193-1575043694:24360..24419TCONS_00051039-exon-scaffold_193-1575043694:24360..24419Clytia hemisphaericaexon
TCONS_00051039-exon-scaffold_193-1491911889:24925..25135TCONS_00051039-exon-scaffold_193-1491911889:24925..25135Clytia hemisphaericaexon
TCONS_00051039-exon-scaffold_193-1510915933:24925..25135TCONS_00051039-exon-scaffold_193-1510915933:24925..25135Clytia hemisphaericaexon
TCONS_00051039-exon-scaffold_193-1575043694:24925..25135TCONS_00051039-exon-scaffold_193-1575043694:24925..25135Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_193supercontigscaffold_193:19900..25135 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.64167	8.8399	3.41399	1.29135	38.3234	27.369	13.4561	16.248	9.90491	11.2491	10.3826	9.04934	5.93627	4.62911	10.5785	9.04509	9.3381	9.12797	9.29566	14.4481	15.5852	19.7355	13.1987	16.8172	5.5033	5.3632	15.1277	6.53265	12.8789	10.4653
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051039 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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