TCONS_00051108 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051108
Unique NameTCONS_00051108
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length169

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051108 ID=TCONS_00051108|Name=TCONS_00051108|organism=Clytia hemisphaerica|type=transcript|length=169bp
NNTAGCGTGGTCGAATTTTTTCCAAGAAACCTACACTTGATACATGAGAC
ATTTTCTGGGAACAAAGAATGTACCTTAGCCACGTATGGTTGTGTTTTTC
GACGAACTTTATATTTCAattgattttctgaaaattagaaATATGTATAC
AATCTCATCAACAGCCATG
Run BLAST on NCBI

transcript from alignment at scaffold_196:4220..4388

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051108 ID=TCONS_00051108|Name=TCONS_00051108|organism=Clytia hemisphaerica|type=transcript|length=169bp|location=Sequence derived from alignment at scaffold_196:4220..4388 (Clytia hemisphaerica)
CATGGCTGTTGATGAGATTGTATACATATttctaattttcagaaaatcaa
tTGAAATATAAAGTTCGTCGAAAAACACAACCATACGTGGCTAAGGTACA
TTCTTTGTTCCCAGAAAATGTCTCATGTATCAAGTGTAGGTTTCTTGGAA
AAAATTCGACCACGCTANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032400XLOC_032400Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051108-exon-scaffold_196-1491911889:4220..4388TCONS_00051108-exon-scaffold_196-1491911889:4220..4388Clytia hemisphaericaexon
TCONS_00051108-exon-scaffold_196-1510915933:4220..4388TCONS_00051108-exon-scaffold_196-1510915933:4220..4388Clytia hemisphaericaexon
TCONS_00051108-exon-scaffold_196-1575043694:4220..4388TCONS_00051108-exon-scaffold_196-1575043694:4220..4388Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_196supercontigscaffold_196:4220..4388 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051108 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top