TCONS_00051282 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051282
Unique NameTCONS_00051282
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1414

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051282 ID=TCONS_00051282|Name=TCONS_00051282|organism=Clytia hemisphaerica|type=transcript|length=1414bp
ATGCCCAATAGGTGTTGAGTTTTAGCTTTCTTGGATCTATCTCCCATTGT
TTCACCTGGAGGGTTGCTGTTATTGAAGGTGATTTTCTCAGAAGTTTTTA
AACAAAGGAGTCCGCTACAAGCTAGTATTTGCTTCTTTGATTCCTCAGCT
TGACTGTGTGGGCATAACGCAATCAATGATCTTTGAATGATCAGATGATA
CGCTTCAACCCATCTTAGTTTCCGAATCTTCCACCATTTCCATACGACTT
ATAGTTATAGGAAAACACAGAATGAACGGTCGTGTGTTGTTAACGTTGGC
CCTTTGCGGTCTTATCCTTTTCGTCCAATTGGACGCAAAAGCCATCAAGC
ACAAGAAACACAAGAAAACACACATCAAACACAAAAAAGCGGCCCTCCCA
CAAGACCCACCAGCACCTGAAGGAGATGCCCCAGCCCCAGATGATGCCGC
CGCCCCACCAGCCGGAGATGCTCCACCAGCAGGAGGCGCCCCACCAGCAG
CCGGTGCTGATGATGAAGATGATGCTGCTGCTCCACCCGCAGCTGCCCCA
AAACCAGGTGCAGGAGGTGCTCCACAACAACCAGGACAACAACCAGGACA
ACCTCCAATCAACCCAAATGATTTGGACGGTAACGGTGTTGCTGACAATC
TTGAGCAACCACAACAACCTCTCCCAGGACAACCACCAGCACCTGGTGCA
CCTCCACCagctgaagaagaagaagaaggcaGTGCCAGTGGAATGGCCCC
ACCTCCTCCACCTCCACCTAAACCAGCACCAAAACCTGTCTGCGATGAAT
GTCCACCAGCCGGTGCTCCACCACCATTAGACTGTATGCCTGCCCCAGCC
TGTGCCCCAGTTGCTGACCCATGTATGCCAGCACCGGGATGTGCCCCAAT
GGCCCCACCAATGGGATGCATGGGAGCCGCTTGTGCCCCACAAATGCCCG
CCGGATGCGCCCCAATGCCAGCCGGATGTGCCCCACCAATGCCAGCCATG
CCCGCTATGCCCGCCCCATGTGCCCCACAACCAGGATGTGCCCCAATGGC
TCCACCAGTTGGATGTCAAGGTGCCGCCTGTGCCCCACAAATGCCCGCCG
GATGTGCCCCAATGGCAGCCGGATGTGCCCCACCAATGCCCATGCCAATG
TCCCCCTGTGGAATGTGTAAGAAACACTGCACAAAAGCATGTCAAGCCAA
GAAATGCTGCAAAAAATCCGCAAAGACCAAGAAGGCTAAGAAACATCATT
AAATTCTCACTCGCTTATCTATGATGCCAACTTCAACCAAACACAATGTG
GAATGTCAACCTTTTTTTACCATGATATAGAGTTTTAaacaatataatta
tttttttgttaaaagtaaatattttttttctgcaagaaagttgatttgaa
ttttaatacatatg
Run BLAST on NCBI

transcript from alignment at scaffold_200:86435..92476+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051282 ID=TCONS_00051282|Name=TCONS_00051282|organism=Clytia hemisphaerica|type=transcript|length=6042bp|location=Sequence derived from alignment at scaffold_200:86435..92476+ (Clytia hemisphaerica)
ATGCCCAATAGGTGTTGAGTTTTAGCTTTCTTGGATCTATCTCCCATTGT
TTCACCTGGAGGGTTGCTGTTATTGAAGGTGATTTTCTCAGAAGTTTTTA
AACAAAGGAGTCCGCTACAAGCTAGTATTTGCTTCTTTGATTCCTCAGCT
TGACTGTGTGGGTAAGTTTTGCTTTATCTCTGCATGCAAGTTGGTCGTTT
TTCGTTCGAAAATCATTCAAGCGTTACAAGGAAAAACATTGGAAACAATA
ATCAGCCATGCGTAACATATCAAACAATGGAAATGATCTTCAATAAACTA
TTCAGGGGGTATTGTTTCTATCCATTTACACTTTATAATACACCAACGTA
ACCCCctgattgtttttgtttgtttattaaTTTAGGCATAACGCAATCAA
TGATCTTTGAATGATCAGATGATACGCTTCAACCCATCTTAGTTTCCGAA
TCTTCCACCATTTCCATACGACTTATAGTTATAGGAAAACACAGAGTGag
tattttaaatatttctcgaaatcttttgtgatatttttgttattttctgg
CATTTCTTTGTGTTATTTGGTTTGAATATTGTAAGTGTATTTGGCGAAAA
AGCATATCCAATGAATGTAGAATACACTGGacagtttaaagtttataaaa
cttgctttttgtttgaaattgtcTGATTGCAACCAAGAATATGAAAAAGT
TTCAGCCAGAATTACCAGAAAACTatctaaatttattttgtgtttGGCAA
ATATTTTATGGAGGTGAAATTTAAAATGGTCTTGTTCTATTCTCCTACTT
CCCAAGAGCaatgaaattttgatattcttggTTTTGCAAGCATCATCGTT
AACCCTCTATTACTTGTTAAGATCCTAGTATCTTATTTTAATGTCTTCTT
CGTTTATCTCTAGATGAACGGTCGTGTGTTGTTAACGTTGGCCCTTTGCG
GTCTTATCCTTTTCGTCCAATTGGACGCAAAAGCCATCAAGCACAAGAAA
CACAAGAAAACACACATCAAACACAAAAAAGCGGGTAAGTTTCATTGCCA
TCTATCTCAAATAGCACTTTTAAAATCTGATATCACTAGTCTGAGTGGAT
TGCTTTTTGTCAATGCTCTAAATACCCTTTTTCGCTTATTAGGGCTCAGT
TTTCTAATTTATGTATTTTCTATTAACAGCCCTCCCACAAGACCCACCAG
CACCTGAAGGAGATGCCCCAGCCCCAGATGATGCCGCCGCCCCACCAGCC
GGAGATGCTCCACCAGCAGGAGGCGCCCCACCAGCAGCCGGTGCTGATGA
TGAAGATGATGCTGCTGCTCCACCCGCAGCTGCCCCAAAACCAGGTGCAG
GAGGTGCTCCACAACAACCAGGACAACAACCAGGACAACCTCCAATCAAC
CCAAATGATTTGGACGGTAACGGTGTTGCTGACAATCTTGAGCAACCACA
ACAACCTCTCCCAGGACAACCACCAGCACCTGGTGCACCTCCACCagctg
aagaagaagaagaaggcaGTGCCAGTGGTAAGTCTCCCTTAAATTATCAT
CATCACCTTTATTGAAGTTGACTATCATTAGTGGGATCTTTTACGTCTCT
TTGTGGGAGATTTGAAGTCAGAGCGATAAAGTTGGTCagcaaataaatca
aaattcgGAAGCTTCGCGTAATACAAGTTAAACATTTCAAGTGCACATTT
TCCACCTCGCTAAAGTTTGTACTCACCTCTACGGCCCATAAGGCTTGAAT
CAGTGTGCTGGCTAACATTTGCTCTGACTTCTCATCTCGTCGATAATCTA
TTATGATTAAAATTATCATGCATGAGGGTATAGATAAAGCACGGTTCTTT
ATTCTTATTATCATTTTCTTAAAACACGTAGTAATTAAATCTAACTTGAA
GGTTAAGCCATGCAGGTTGAGCCATGAAGGTTGTAGAACTAGTTTAAGGA
TAGTAGAGTTTTTCCTAGTCCTCTGAAATGCCCTATCGTCTGGTATTCTT
TGGATTAAAGTTGGTTCAAGCCAGAATAAATAAAAAGTCAAGGGTAATTT
TAGAGGACTGGGGATAATTCATGCACATCATCTTTCATGATTATTTCTGT
AAGTGTCtaatttatttctttaaaaaagtaaaTGCAGTGAAACCAAAAGA
AAACGTAAAATTTAATACAAGATTATTGATTCTCAATCTGTCTCAATACA
AGTAGAAAATGAATTTATCGGGTTAGAATATTTCAGAGTGGgtaaacctt
tttaaaattttcagtggTTTTCATTGCATTTACCTAAAGAAATTCGAATT
CACAAAACTTGAATAAAAGTTAAGCATAGCAAAGTGTAGAAAATTAAGTT
GAAAAGATTCCCTTTGAAAAACcttgtgaaatttttaaaaactcaataaa
acaataatacaatgtatagcaatgtgccctcccggttattaccggGAACA
ATAATAAACAAACTTTGAAAGCTTgaaactacaatcatggacaaaatatg
aGACAAGGGGATTTCtttgcgaaattttaaacaccacagatgatttttaa
gcgcgttaaatAACAGTTGGAAAGTACAGTTTTAACTGTGAGTTTTAACA
AAAGACTctggatctcaggatttaaaagctcgaatttgctccaataaggc
ttggatTATAGAAACCATCGAACCACTCCAGAATCGAAAGAtacaatgaa
agaaagtggaagtgctaaaatagcaattctcgctNCAAACCAAGCCAGCG
GATCGAAATATTCAACGAAAGAAAgcggaagtgctaaaatagcaattctc
gtcagaactttaaattctgaaaaacgttaaaatacactaaaatctcaata
tatttcgaccatgattgtagtacgTAAGAGAAACGAGCAATatctaaaag
aaattttcttttttgctgtAATAACATTTTTGCACGAACCAGACCAAAAA
ATGACTAGATTTCTGATAGTATGTCGAGTTTAAAAAATGCATGTCTTTTT
GCCCTTATCAGATGCTtaacttttattcttttttgttGATGTCCATATGA
AAAGTGAATGGCTAATATCGAAAATCGAAgttgtcttttttttattttct
taagtTCACTGTCCCCACCATAATACCTATCGATGTGAGAATGTTTTTAG
TTGTTATGCCATGCGCGACACGAAATCGTCCCTTGAAATTAGTCATTTAT
TTTTCACCCTTAAAGCACCCCTGTGATAAAGATTTAATGTTGTTTCCCTG
GGTCATTTGGGGGAATTAAAAACACCcgttttgaaaagataaaacCTCCT
TAGTATCTTTCACTTTTGTTTCTAAAACTACTGAGACCATGACCAGTAAA
ATACATACATACACACAAACTGACTGACTGAATGAAACGGTCCTTCCTAT
ATCTAGGCGCCGCTCCACCACCCGCAAATCCAGTGGCCCCTTCATTACGT
TTGTGCCCTGGTGATTGCGACCCACAATGTGCTCCAGCTTGCCATGACTT
TTGTTGCAGTGGACATCCGGCCTTAAATAGATACAACGGACCACCTCCAT
GTGCCGAGCCCCCATGTATGCCTCCTATGCCACCCCCAATGCCAATGGCT
GCACCCTGTGCCCAACCCCCTTGCGCCCCTGCAATGCCAATGGCTGCACC
TTGTGCCCAACCCCCTTGCGCTCCACCAATGCCAATGGCTGCACCTTGTG
CCCAACCCCCTTGCGCCCCACCAATGCCAATGGCTGCACCTTGTGCCCAA
CCCCCTTGCGCCCCACCGATGCCAATGGCTGCACCTTGTGCCCAACCACC
ATGCGCTCCAGCCATGCCTGCTGCTATGCCATGCGCCCAACCTCCTTGTA
TGCCAGCATCAGCTCCTATGTGTCAACCACCCCCTAGTTGCATGCCAGCT
GCCGCCCCTTCTGTGTGTGCACCAGGTCTTGTTCGATGTATGCCTGCTCA
ACCAGCAGCAGGATGCAACCTCCCACCACAATGCCCTCAAGCCACCCCTA
TGCCACAGTGTCTCCCTCCTGGTGCTTGTAGTGCTGAAGAGATCCCAACC
CCAACAGAAAAACCTAAGCAAGAAAATTTGACCATGCATGAAATGATCAT
GAATATGCCACTACCATGTGCTCAACCTCCATGCATGCCTGCTGCTATGC
CATGCGCCCAGCCGCCTTGTATGCAAGCCCCTATGGCTGCACCCTGTGCC
CAACCTCCCTGTGCTGCTGCCCCTATGCCAATGTCTGCTGCTTGTGCCCA
ACCCCCATGTGCTTCTGCTCCAATGCCAATGTCTGCTCCATGCGCCCAGC
CTCCTTGTGCTCCAGCCATGCAAATGGCTGCACCCTGCGCACGACCACCT
TGTGCCCCTGCAATGCCTGCTGCTATGCCATGTGCCCAGCCTCCCTGTGC
TGCTGCCCCAATGCCAATGGCCGCCCCCTGCGCCCAACCACCTTGTGCCC
CTGCAATGCCTGCTGCTATGCCTTGTGCTCAGCCTCCATGTGCTCCACCC
ATGGCAGCCACCCCAGCCTGCGCTAAACCACCCTGCATGGCTCAACCTTC
ATGTGCTTCTTGTCGTCGCCATTGTGCTCCTCATTGTCCCAAAAGATGCT
GTAAAAAATCCACCAAGAAAtctcacaaaaacaaacattgaatTCCTTAA
CATCCTTTGAACTTAGTGTAGATAGACAGCCTTCCTCATTATGAGATCGA
CATTTTTAGGATTTGATGAGCCTCCACCACaaacaccaccaccaccacct
tCGAAATGTAACCAGTGTGATCCTTCTGATAGTAGTTGCCAATCTGACCC
ATCTTGTGCCCAACAACAGGGTGCCATGTGCACCCCCCAACCTGGTTGTG
CCCCTTCCTTCACTCCAGGGTGCCTTAACTGCATGCCACAATACCCATCA
GGATGTGCTGCCTTACCTCCAATGTGTTTCCCTCAAATGATGCCCCCTCC
TCCCCCTCCTCCTTGTCCTGCCCCTGGTTCCTGCACACCAGCAGAACTTG
AAGCAAGCAAAATGCCGACTCCTCCTCCAGTCCCTGTGCAATTCCAAAGT
CCAGATTCATTCCTTGTCACATGTCCATTGCCGCCCTGCATGCAACAACA
GATGCCTTGTGGTCAAGCTGGAGCTGCCCCTTGTCCCGGAGCTAAGTCCC
CTGCGTGTCCTTCCGGTTGTGGAAGTACTTGTGGCCCAAAATGTCATCGG
CGTTGCTGtaaaaagcataaaaaatcaaccaagaAAACCTCAAAACACAA
GCGGAAACAACATTAATTCTTTTTCTACCATTTTATAAAAACCCTCTAAA
ACACATAtaccaaacaaacaaaaacattctcACAATcacatcaaaaaaac
tttttcttcattAAATAGGAATGGCCCCACCTCCTCCACCTCCACCTAAA
CCAGCACCAAAACCTGTCTGCGATGAATGTCCACCAGCCGGTGCTCCACC
ACCATTAGACTGTATGCCTGCCCCAGCCTGTGCCCCAGTTGCTGACCCAT
GTATGCCAGCACCGGGATGTGCCCCAATGGCCCCACCAATGGGATGCATG
GGAGCCGCTTGTGCCCCACAAATGCCCGCCGGATGCGCCCCAATGCCAGC
CGGATGTGCCCCACCAATGCCAGCCATGCCCGCTATGCCCGCCCCATGTG
CCCCACAACCAGGATGTGCCCCAATGGCTCCACCAGTTGGATGTCAAGGT
GCCGCCTGTGCCCCACAAATGCCCGCCGGATGTGCCCCAATGGCAGCCGG
ATGTGCCCCACCAATGCCCATGCCAATGTCCCCCTGTGGAATGTGTAAGA
AACACTGCACAAAAGCATGTCAAGCCAAGAAATGCTGCAAAAAATCCGCA
AAGACCAAGAAGGCTAAGAAACATCATTAAATTCTCACTCGCTTATCTAT
GATGCCAACTTCAACCAAACACAATGTGGAATGTCAACCTTTTTTTACCA
TGATATAGAGTTTTAaacaatataattatttttttgttaaaagtaaatat
tttttttctgcaagaaagttgatttgaattttaatacatatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032507XLOC_032507Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051282-exon-scaffold_200-1491911889:86435..86595TCONS_00051282-exon-scaffold_200-1491911889:86435..86595Clytia hemisphaericaexon
TCONS_00051282-exon-scaffold_200-1510915933:86435..86595TCONS_00051282-exon-scaffold_200-1510915933:86435..86595Clytia hemisphaericaexon
TCONS_00051282-exon-scaffold_200-1575043694:86435..86595TCONS_00051282-exon-scaffold_200-1575043694:86435..86595Clytia hemisphaericaexon
TCONS_00051282-exon-scaffold_200-1491911889:86820..86929TCONS_00051282-exon-scaffold_200-1491911889:86820..86929Clytia hemisphaericaexon
TCONS_00051282-exon-scaffold_200-1510915933:86820..86929TCONS_00051282-exon-scaffold_200-1510915933:86820..86929Clytia hemisphaericaexon
TCONS_00051282-exon-scaffold_200-1575043694:86820..86929TCONS_00051282-exon-scaffold_200-1575043694:86820..86929Clytia hemisphaericaexon
TCONS_00051282-exon-scaffold_200-1491911889:87348..87468TCONS_00051282-exon-scaffold_200-1491911889:87348..87468Clytia hemisphaericaexon
TCONS_00051282-exon-scaffold_200-1510915933:87348..87468TCONS_00051282-exon-scaffold_200-1510915933:87348..87468Clytia hemisphaericaexon
TCONS_00051282-exon-scaffold_200-1575043694:87348..87468TCONS_00051282-exon-scaffold_200-1575043694:87348..87468Clytia hemisphaericaexon
TCONS_00051282-exon-scaffold_200-1491911889:87614..87961TCONS_00051282-exon-scaffold_200-1491911889:87614..87961Clytia hemisphaericaexon
TCONS_00051282-exon-scaffold_200-1510915933:87614..87961TCONS_00051282-exon-scaffold_200-1510915933:87614..87961Clytia hemisphaericaexon
TCONS_00051282-exon-scaffold_200-1575043694:87614..87961TCONS_00051282-exon-scaffold_200-1575043694:87614..87961Clytia hemisphaericaexon
TCONS_00051282-exon-scaffold_200-1491911889:91803..92476TCONS_00051282-exon-scaffold_200-1491911889:91803..92476Clytia hemisphaericaexon
TCONS_00051282-exon-scaffold_200-1510915933:91803..92476TCONS_00051282-exon-scaffold_200-1510915933:91803..92476Clytia hemisphaericaexon
TCONS_00051282-exon-scaffold_200-1575043694:91803..92476TCONS_00051282-exon-scaffold_200-1575043694:91803..92476Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_200supercontigscaffold_200:86435..92476 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.245348	0.637604	0.0657366	0.109293	1.08736	0.286415	4.14657	1.29399	1.80518	2.24434	3.53991	1.969	3.75377	2.41325	2.2885	10.4794	4.84236	4.34286	0	0.298974	1.81904	3.4223	2.46534	1.96118	4.03994	4.89325	0.737076	0.786628	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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