TCONS_00005112 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005112
Unique NameTCONS_00005112
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length288

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005112 ID=TCONS_00005112|Name=TCONS_00005112|organism=Clytia hemisphaerica|type=transcript|length=288bp
GCTCACACCACTTTTTTGTCAGCCAAACTTGCTCGAGCAAATGGTATCTT
ATCTAAGCTCAGGCACTACGTTCCAACAAAAACTCTAGTTAACATCTACT
TTGCTCTATTTCACTCTCATCTCCAATATGGTTGTCAGCTCTGGGGCTCT
CTGTATACGTCTCTTAATATTTCATTTGTTCACAAATTCCTGAACAATAG
ATTACCCCAAgatcttcttaatttttttgaatttgttcaGCTTGAAGCTG
AAGGTGACGATAATCAAGGTACCAGAGGAGCAAGATTG
Run BLAST on NCBI

transcript from alignment at sc0000050:628788..629075

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005112 ID=TCONS_00005112|Name=TCONS_00005112|organism=Clytia hemisphaerica|type=transcript|length=288bp|location=Sequence derived from alignment at sc0000050:628788..629075 (Clytia hemisphaerica)
CAATCTTGCTCCTCTGGTACCTTGATTATCGTCACCTTCAGCTTCAAGCt
gaacaaattcaaaaaaattaagaagatcTTGGGGTAATCTATTGTTCAGG
AATTTGTGAACAAATGAAATATTAAGAGACGTATACAGAGAGCCCCAGAG
CTGACAACCATATTGGAGATGAGAGTGAAATAGAGCAAAGTAGATGTTAA
CTAGAGTTTTTGTTGGAACGTAGTGCCTGAGCTTAGATAAGATACCATTT
GCTCGAGCAAGTTTGGCTGACAAAAAAGTGGTGTGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002908XLOC_002908Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005112-exon-sc0000050-1491911889:628788..629075TCONS_00005112-exon-sc0000050-1491911889:628788..629075Clytia hemisphaericaexon
TCONS_00005112-exon-sc0000050-1510915933:628788..629075TCONS_00005112-exon-sc0000050-1510915933:628788..629075Clytia hemisphaericaexon
TCONS_00005112-exon-sc0000050-1575043694:628788..629075TCONS_00005112-exon-sc0000050-1575043694:628788..629075Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:628788..629075 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.41521	4.26749	3.08574	5.10194	1.80788	2.85723	3.34059	6.91018	1.50627	1.86576	0	0.939114	0.594397	6.67935	1.41349	2.17494	3.35463	0.343839	0.773761	3.47961	2.05089	1.46692	2.94488	1.17362	1.12851	1.92133	3.59893	4.57353	1.92348	2.90933
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005112 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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