TCONS_00051629 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051629
Unique NameTCONS_00051629
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1650

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051629 ID=TCONS_00051629|Name=TCONS_00051629|organism=Clytia hemisphaerica|type=transcript|length=1650bp
caccttgaagaaaatgttgatcgaaaaatcttgtcatttgatgaaggatt
gcaaagtttacaggcccttttttaatccaaatattttcttacaccaatgt
catatacaatgaatctcgtctcatcttatttccaatacttaagttagcca
ataagatttcacctatcaacaaaagagcttattaaaaatgcacgatatat
gagattatgagcatgcatacctcgtaacttttttaatcgtagggcgagca
tggttacaatagcatacttctcctgtttctttatacctccatggaaTGAA
ATAGGATTGATAATTAACTTAAATTAATCAAATCCGAAGTAGAAAAGTAG
GACCATAATATGATTTAAggaaaaagagagagagatatctcttttcacat
caaaaagtaTACATAGAGAGTGAAAGATTAGTTGAGAAAATTTGTCTTAA
AAAATGTTCACTATTTTTCTCGTATtaacttttcaagttttttgctTTAC
TGGGACTGACATTCTAAACAGATCAACAGACTTTCGAACACTGAGTTGTA
CTCAAAATAGAAATGTCACTATTTTTATGCATGGAATGATCAGAGAAATG
CGTGATGTGTTTTTGAACTATAATTTACCAGAGATAGCAGAGAATCATCC
TTGCATTGCAATAAATATATATTTGCCGAATGAAGATCGTGTTATACGTT
GGGATGAAAATACGATCAACCATGTCGAGAGACAGATGGTGGACCAAATG
GGATACGCCAGTCCTGATTACTTTTCGACGATTAATAAAAGGGTTTTAAG
TCTCCTTGAAGAAATACATAATGATAAAGATGGACTAATATCAAGTAACG
ATGATTCTTTTGATCAGACAATTTTCTTTGCGACTTTCTATAAGTGGTCT
AACGCTATGAGTCTTTCTAACACACTTAAGAAACTTCAAGATGATAGCTG
GAATGTTATTGTTCTTTGTGATCAGGAATCATGTCCTTCAGAATACTGGA
TGCCAATACACAGACTCTTATTTACAGATTTATATATATTTAATACCAAA
ATGTATCTTCATCAACATCTAGCAGATTTGGTCAATCTCATAAAGAACCC
TGATTATAACAGATATCAGTTTTATCAATCGCTACCAATGTCTAAACATC
TCTTCAATGAGACTTGTTTGAAAGATGTTGATGAAATTCACAtcacaatt
tttcatttaactGATGCTTACCTACCGCCGGCTATGTGGATTACAAAAAA
CGTCAACGAGAGACGGAAAATGTTAAACAAAGAACCATTAGAGattgtat
ttcattctaaaaaTCCTGTAAAAATAAATTATGCTGGTTATGCcaaattt
atcgaaaatcaATCCAATCACATTAGGTTTTCAGATTACGATCAGAACAT
AGTAATTGCACCAGAGATTTTCCATGTTTTTGTTATTGAATTCAATTGCT
ATTCTTTATTTACGACAATggaaaaaatgtataaaatgaAAGATGTGAAA
TGTCCTTTCGTCGATGACTCGGACACCATGGAAAGTTTTGATGAATTGTT
TGAACTTATAAACAGAGATATTTGTGCGGATAATTAATAACACgtcgaaa
aaatttcaaagcctTCACCTTTCTTAACATTAcagagtttatgtatgtgt
Run BLAST on NCBI

transcript from alignment at scaffold_202:514342..521355-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051629 ID=TCONS_00051629|Name=TCONS_00051629|organism=Clytia hemisphaerica|type=transcript|length=7014bp|location=Sequence derived from alignment at scaffold_202:514342..521355- (Clytia hemisphaerica)
CACCTTGAAGAAAATGTTGATCGAAAAATCTTGTCATTTGATGAAGGATT
GCAAAGTTTACAGGCCCTTTTTTAATCCAAATATTTTCTTACACCAATGT
CATATACAATGAATCTCGTCTCATCTTATTTCCAATACTTAAGTTAGCCA
ATAAGATTTCACCTATCAACAAAAGAGCTTATTAAAAATGCACGATATAT
GAGATTATGAGCATGCATACCTCGTAACTTTTTTAATCGTAGGGCGAGCA
TGGTTACAATAGCATACTTCTCCTGTTTCTTTATACCTCCATGGAATGAA
ATAGGATTGATAATTAACTTAAATTAATCAAATCCGAAGTAGAAAAGTAG
GACCATAATATGATTTAAGGAAAAAGAGAGAGAGATATCTCTTTTCACAT
CAAAAAGTATACATAGAGAGTGAAAGATTAGTTGAGAAAATTTGTCTTAA
AAAATGTTCACTATTTTTCTCGTATTAACTTTTCAAGTTTTTTGCTTTAC
TGGGACTGACATTCTAAACAGATCAACAGACTTTCGAACACTGAGTTGTA
CTCAAAATAGAAATGTCACTATTTTTATGCATGGAATGATCAGAGAAATG
CGTGATGTGTTTTTGAACTATAATTTACCAGAGATAGCAGAGAATCATCC
TTGCATTGCAATAAATATATATTTGCCGAATGAAGATCGTGTTATACGTT
GGGATGAAAATACGATCAACCATGTCGAGAGACAGATGGTGGACCAAATG
GGATACGCCAGTCCTGATTACTTTTCGACGATTAATAAAAGGGTTTTAAG
TCTCCTTGAAGAAATACATAATGATAAAGATGGACTAATATCAAGTAACG
ATGATTCTTTTGATCAGACAATTTTCTTTGCGACTTTCTATAAGTGGTCT
AACGCTATGAGTCTTTCTAACACACTTAAGAAACTTCAAGATGATAGCTG
GAATGTTATTGTTCTTTGTGATCAGGAATCATGTCCTTCAGAATACTGGA
TGCCAATACACAGACTCTTATTTACAGATTTATATATATTTAATACCAAA
ATGTATCTTCATCAACATCTAGCAGATTTGGTCAATCTCATAAAGAACCC
TGATTATAACAGATATCAGTTTTATCAATCGCTACCAATGTCTAAACATC
TCTTCAATGAGACTTGTTTGAAAGATGTTGATGAAATTCACATCACAATT
TTTCATTTAACTGATGCTTACCTACCGCCGGCTATGTGGATTACAAAAAA
CGTCAACGAGAGACGGAAAATGTTAAACAAAGAACCATTAGAGATTGTAT
TTCATTCTAAAAATCCTGTAAAAATAAATTATGCTGGTTATGCCAAATTT
ATCGAAAATCAATCCAATCACATTAGGTTTTCAGATTACTCTCAGAACAA
AGTAATTGCACCAGAGATTATCTATGTTCGTGTTATTGAATTCGATTGCA
ACTATAAACCGCATTTGTTTACGCCGAAGGAAAAAATGTATAAAATGAAA
GATGTGAAATGTCCTTTCGTTGATGACTCANTACGCCGAAGGAAAAAATG
TATAAAATGAAAGATGTGGAATGTCCTTTCGTTGATGACTCAGACACTAT
GGAAAGTTTTGATGAATTGTTTGAACTTATAAACAGAGATATTTGTGCGG
ATAATTAATAACACGTCGAAAAATGTTCAAATCTTTCTTAACATTACCGA
GTTTATGTATGTGTGTTTTTCTGCGACGGAGACGGTAAGGATCTTGTCTA
GATCCTGACCAGTTGAGGACGACAATAAATCAGCGCTTTTACTATCCTCG
ATTTAGCGGGTCAGAACTGCGGGATATTCCAAATCGCTTCCGTTCTCAAA
AGTGCAAATACATAAACTTGCTATTTTCAGTTTTAAGCCTAAAAATAATT
CATAGGCGTAGCGAGATACCCTGCAAGATTTATGGATGAGAGCGGTTTTT
ACGACACTGTAATTATTGTCTTTGTTTTATCAAAAGATCATGAATATGTC
ATAAACGTCTGCACTCCCACATAAATTTTGCAGGGTATCTCGCTACGCCT
ATGAATATTCTTTATTGTACTATTTCGTAAGTATTTTTGTGTAATTTCCT
AACTAAAGAAATTGCGTCTTTTTTTGCAAATTCTTAAAATATTCTTAACT
GTTTAATAATATGTTCTTATTTTCATCACTTTGTGAGCATTTTTGTGTAT
TTTCTTAAGACATTAGGTGTGTTTGAGTCCGCAGAACCTTAAAATTATTT
TAACGTTTTGTTAATATTTTCGCTATCGTAACCTTATGTTCTTACATAGT
TTATTCTTATGAATAAATGAAAAATGTGTAAATGGAACTATGGCTCGCGA
CAACTTTTGAGATTTATACAGTGTGTCCGGAAAAAGCCTTATCAGTATTT
TTTTTTGCATGCAATAAAAAATCATGAAATAATTTTTCTTTATTATTTTT
TCTTTATACTTCCAATTTTTTATGTTACGTTATAGTTATAGTATATGTTC
TTATAAGAGAGCGTGTATTAGAGCAATTCCTTTAGGAACCTTTCAGATAT
TTTCTTAGTCGGAGAGATACTTGATAAAATGAGTAAGTAAGTGTCGTATT
TCAATGAAATTCTGAACACACCACCAAATTAACCCTTGGATTCGGTTCCG
ACACGAATTTTTTTTTTTTCTTTAGTTAGGAAATTACACAAAAATAATCA
CAAAACAGTAGAAAAAAGAATATTTTTAGGCTTAAAACTGAAAATAGCGA
GTTTATGTATTTGCACTTTCGAGGACAGTAGAATAACTAAAGTGATTTAT
AGGAATAACCCGCGGTTCGAGGACGGTCCCAAAGCACTGATTTACCGTCG
TCCTCAGCTGGTTAGGATCAAGACAAATCAGAACCTCTTACCGGCTCTGT
CGCAGAAAAACACACATACACAAACTCGGTAATATTAAGAAGGTGAAGGC
TTTGAATATTTTTTGACGTGTTATTAATTATCCGCACAAATATCTCTGTT
TATGAGTTCAAACAATTCATCAAAACTTTCCATAGTGTCCGAGTCATCAA
CTAAAGTCTGTCCAGATATAATTGGCAGTGGAAACAAGAATGCCTGTAAC
TTTTGATAGTCAAATATAATTATGGAAATGTTTTTTGCTTGTTTCAGAGA
ATCAAAAGCGCTATATTAGAATGTATTTTTGGTTGAAAAATTCGCAATTT
TTAGCGGTTAAATTTGCTATTGCAAAAATTGAGCTTTTTTTCTACTTATG
CTATAACGTTCATTTTTACACCAGTGGTAGTTCAACCTTAGGTTAGGAAG
GTTGTTAAATTTCAAGGCAAACAGAAAAGTCCTTCGGAAGATATGGGACC
CGAAATACCCCTTGGTAGCACTTTTCTGTGAAATATCAAATCTCCAACTT
ATTACTAAAAACGGGGGTTATGTTATCTTTTTTTAACAGTGCAATTGAAA
GTTGGAAAGTGTTAAGTGTTGGTGCATTGGTTTATTGGTATAATCGATTA
TTTCGAACGAAGTCACAGTATATAATTGTTTTTATTGAAAAGATAACCAT
GAACTTATATTGCCTTTGTTATTTTTAAGTCATTAAAGAACTTTGCTAAT
TCCCAAAACACTAAAAACAGTATGGCTATGAGGTCATTAAAGAGATCGTA
AAATGTATTATGATCAAAAAACTGTGTTATCAATCATATCACTACCCCCG
TTTTCAGTAATAAGTTGGAGATTTGATATTTCACAGAAAAGTGCTACCAA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTATCTCTAATGGTTCTTTGCTTAACCTTTTCCG
TCTCTCGTTGACGTTTTTTTGTAATCCACATAGCCGGCGGTAGGCAGGCA
TCAGTTAAATGAAAAGTTTCGATATGAATTTCTTCAATATCTTTCAAACA
AGTTTCATTAAAGAGATGTTTAGACATTAGTAGCGATTGAGAAAACTGAT
ATCTGTTATAATCAGGGTTTTTTATGAGATTGGCCAAATCTGCTAGATTC
TGATAAAGATACATTTTGGTTGTAAATCTATGGAAATCTTCTGTAAATAA
GAGTCTGTCTATTGGCATCCAGAATTCTGAAGGATATGACATCTGATCAT
AAAGAAAAATAACATTCCAGCTATCATCTTGAAGTCTCTGACCATAGAGT
TATGTATAAAGAAAGACAGTAGATGAATTGGTCGGTAATTGGTCGTTAAA
GTCTTTTGATTTCTTTTATGTAATAAATCAAAAGAAATTCTAGGCTCGCC
CGATGAAATACGACTTTTTAGTAGAACTCAAGTTTGCTCTGAACATTCTT
ATTATCAGCATAAAAGATTTCTAGCCTTCTAATATACGAGAATANGATAT
CTGTTATAATCAGGGTTTTTTATGAGATTGGCCAAATCTGCTAGATTCTG
ATAAAGATACATTTTGGTTGTAAATCTATGGAAATCTGTAAATAAGAGTC
TGTCTATTGGCATCCAGAATTCTGAAGGATATGACATCTGATCACAAAGA
AAAATAACATTCCAGCTATCATCTTGAAGTCTCTGACCATAGAGTTATTA
AAGAAAGACAGTAGATGAATTGGTCGGTAATTGGTCGTTAAAGTCATTTG
ATTTCTTTTATGTAATAAATCAAAAGAAATTCTAGGCTCGCCCGATGAAA
TACGACTTTTTAGTAGAACTCAAGTTTGCTCTGAACATTCTTACTATCAG
CATAGAAGATTTCTAGCCTTCTAATATACGAGAATTAAGTAAAATTTGGC
TCCACGAAATAAGTTTGCGTTCAATTTTGTCATCCATTAAATTTTGTTTT
GAAAAGATATTTTCTCCAGCCAGAAAATAAAAATTCTTTTTAACGAGCAC
ACACAATTTCAGACCCAGTTTGTAGACAAAAAGTCGCTGGAGAATTTTGG
AGGAAAGTATTAAGCAATAGAGTTCACCTTGAAGAAAATGTTGATCGAAA
AATCTTGTCATTTGATGAAGGATTGCAAAGTTTACAGGCCCTTTTTTAAT
CCAAATATTTTTTTACACCAATGTCAGAAACAATGAATCTCGTCTCATCT
TATTTCCAATACTTAAGTTAGCCAATAAGATTTCATCTATCAACAAAAGA
GCTTATTAAAAATGCACGATATATGAGATTATGAGCATGCATACCTCGTA
ACTTTTTTAATCGTAGGGCTAGCATGGTTACAATAGCATACTTCTCCTGT
TTCTTTATACCTCCATGGAATGAAATATGATTATAATTAACTTAAATTAA
TCAACTCCGAAGTAGAAAAGCAGGACCTTAATATGATTTAATAAAAAAGA
GAGAGATGTACTTCTTTTCACATCAAAAAGTATACATAGAGAGTGAAAGA
TTAGTTGAGAAAACTTGTCTTAAAAAATGTTCACTATTTTTCTCGTATTA
ACTTTTCAAGTTTTTTGCTTTACTGGGACCGACATTCTAAACAAATCAAC
AGACTTTCAAACACTGAGTTGTACCCAAAATAGAAATGTCACTATGGTTA
TACGGGGTATGACCTGGACAATGTATGATGTGTTTTTGAACTATCATTTA
CCAGAGATAGCAGAGAATCATCCTTGCATTGAAATAAATATATATTTACC
GAACGAAGATCGTGTTATACGTTGGGATAAAAACACGGTCAACCATGTCG
AGAGACAGTTGAAGGACCCGCTGGAAGCCGCTCTTGATTACTTTCCGACG
ATTGAGAAAAGGGTTTTGAGTCTCCTTGAAAAATTACATAATAATAAAGA
TGGACTAATGTCAAGTAACAATGATTCTTTCGATCAGACATTTTTCATTG
CGACTGACTATATGTGGTATGATATGAGAATTTCTAACACACTTAAGAAA
CTTCAAGATGATAGCTGGAATGTTATTGTTCTTTGTGATCAAGAATCATG
TCCTTCAGAATTCTGGATGCCAATTCACAGACTCTTATTTACAGACTTCC
GTAGATTTACAACCAAAATGTATCTTCATCAGCATCTAGCAGATTTGACC
AATCTCATAAAGAACCCTGATTATAACAGATATCAGTTTTATCAATCGCT
ACCAATGTCTAAACATCTCTTCAATGAAACTTGTTTGAAAGATATTGAGG
AAATTCATATCAAAACTTTTCATTTAACTGATGCCTACCTGCCGCCGGCT
ATGTGGATTACAAAAAACGTCAACGAGAGACGGAAAAAGTTAAACAAAGA
ACCATTAAAGATAGTATTTCATTCTTTAAATCATGTGAAAGATTACGCTG
ACTATACCACATTTATCGAGAATCAATCCAATCACATTAGGTTTTCAGAT
TACGATCAGAACATAGTAATTGCACCAGAGATTTTCCATGTTTTTGTTAT
TGAATTCAATTGCTATTCTTTATTTACGACAATGGAAAAAATGTATAAAA
TGAAAGATGTGAAATGTCCTTTCGTCGATGACTCGGACACCATGGAAAGT
TTTGATGAATTGTTTGAACTTATAAACAGAGATATTTGTGCGGATAATTA
ATAACACGTCGAAAAAATTTCAAAGCCTTCACCTTTCTTAACATTACAGA
GTTTATGTATGTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032686XLOC_032686Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051629-exon-scaffold_202-1575043694:519980..521355TCONS_00051629-exon-scaffold_202-1575043694:519980..521355Clytia hemisphaericaexon
TCONS_00051629-exon-scaffold_202-1575043694:514342..514615TCONS_00051629-exon-scaffold_202-1575043694:514342..514615Clytia hemisphaericaexon
TCONS_00051629-exon-scaffold_202-1510915933:519980..521355TCONS_00051629-exon-scaffold_202-1510915933:519980..521355Clytia hemisphaericaexon
TCONS_00051629-exon-scaffold_202-1510915933:514342..514615TCONS_00051629-exon-scaffold_202-1510915933:514342..514615Clytia hemisphaericaexon
TCONS_00051629-exon-scaffold_202-1491911889:519980..521355TCONS_00051629-exon-scaffold_202-1491911889:519980..521355Clytia hemisphaericaexon
TCONS_00051629-exon-scaffold_202-1491911889:514342..514615TCONS_00051629-exon-scaffold_202-1491911889:514342..514615Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:514342..521355 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.996278	0.912985	1.24554	1.20975	1.37118	0.707281	0.916768	0.937751	0.432129	0.488155	0.638403	0.296001	0.502468	0.570821	0.28609	0.149836	0.45327	0.261063	1.20755	0.739404	1.4487	1.73257	0.232499	0.705395	0.939963	1.50648	2.97616	2.52806	1.70672	1.56891
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051629 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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