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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051710 ID=TCONS_00051710|Name=TCONS_00051710|organism=Clytia hemisphaerica|type=transcript|length=918bp
GTCCATTTTATTATTGGGTCCATTCAACTTCCAGCTTGTTTAATCTGTTT
Tcctttattttagtgaaaatagaaataatactagtaaaaatgtcaaataa
agaTAAATGGGCTGCCTATCACAAGGAAGTAGCAAAGAAAAGAAAGGGAC
CAAATGAAGAAAAGAATCCAAAGAAAGCACAGAAATTGTCTGCACTCATC
GTACACCGCATGAACCCTGTTCCAACTGGAAAGCTCTTGAAATATGAACC
CGAGAAACCCAGAGATTTTGTAGACTTTAAAGGCTACCAAAGTCTGAGTT
TGAAGAATGTTAAACTTGCCTGTGAAAAGTTTTATGGTGAAAAACCTGGC
TCTTGTGATGTGTTATTTTGTGACAAGGGCCCAAGTTGTGATTCTGATGA
TCAAATTGTTGGTAAAAAAGTGATACTTGTACGTTTCATCCAACCATCTG
AAAAATCTATAAATATGCCAGTCTCACCTAATTCGGATATGTCATCAATT
GCACTTTCAAGAACATCTGTGTGTTACTCAAAAAGAAGACGCACTTCAAG
CAAAATTGTTAAAGATCAAAACCCAACCCCTGCTCAACCATTTCCTAAAT
CTGTTTCTATTGGGGATGTCATCGAGGCTGGGAAACTACAAAAACCCACa
gcagaaataaaaaatgaactaGTACTTGAATTTTATGACATTTCTTCAAG
AATTTggataaaagaaaacaaaactcTATCAATCAAAACCGAAAAATTTT
CGGAGGGGGCTTTCCGGGAAGCTTTCATGGCTTATGATATTGAAGATGGC
AAGCCTAACTTTTTTGTggtgaaaaagtttaaaaaaagctCTTGGGAAAA
AGTCGCAAGAATTTATGAAATGTCCCTTGAACAGCATACAAGGAAGCAAG
TTCAGATGCACATGGCCG Run BLAST on NCBI protein sequence of TCONS_00051710-protein >TCONS_00051710-protein ID=TCONS_00051710-protein|Name=TCONS_00051710-protein|organism=Clytia hemisphaerica|type=polypeptide|length=305bp
PFYYWVHSTSSLFNLFSFILVKIEIILVKMSNKDKWAAYHKEVAKKRKGP
NEEKNPKKAQKLSALIVHRMNPVPTGKLLKYEPEKPRDFVDFKGYQSLSL
KNVKLACEKFYGEKPGSCDVLFCDKGPSCDSDDQIVGKKVILVRFIQPSE
KSINMPVSPNSDMSSIALSRTSVCYSKRRRTSSKIVKDQNPTPAQPFPKS
VSIGDVIEAGKLQKPTAEIKNELVLEFYDISSRIWIKENKTLSIKTEKFS
EGAFREAFMAYDIEDGKPNFFVVKKFKKSSWEKVARIYEMSLEQHTRKQV
QMHMA Run BLAST on NCBI transcript from alignment at scaffold_202:731363..732280 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051710 ID=TCONS_00051710|Name=TCONS_00051710|organism=Clytia hemisphaerica|type=transcript|length=918bp|location=Sequence derived from alignment at scaffold_202:731363..732280 (Clytia hemisphaerica)
CGGCCATGTGCATCTGAACTTGCTTCCTTGTATGCTGTTCAAGGGACATT
TCATAAATTCTTGCGACTTTTTCCCAAGagctttttttaaactttttcac
cACAAAAAAGTTAGGCTTGCCATCTTCAATATCATAAGCCATGAAAGCTT
CCCGGAAAGCCCCCTCCGAAAATTTTTCGGTTTTGATTGATAgagttttg
ttttcttttatccAAATTCTTGAAGAAATGTCATAAAATTCAAGTACtag
ttcattttttatttctgctGTGGGTTTTTGTAGTTTCCCAGCCTCGATGA
CATCCCCAATAGAAACAGATTTAGGAAATGGTTGAGCAGGGGTTGGGTTT
TGATCTTTAACAATTTTGCTTGAAGTGCGTCTTCTTTTTGAGTAACACAC
AGATGTTCTTGAAAGTGCAATTGATGACATATCCGAATTAGGTGAGACTG
GCATATTTATAGATTTTTCAGATGGTTGGATGAAACGTACAAGTATCACT
TTTTTACCAACAATTTGATCATCAGAATCACAACTTGGGCCCTTGTCACA
AAATAACACATCACAAGAGCCAGGTTTTTCACCATAAAACTTTTCACAGG
CAAGTTTAACATTCTTCAAACTCAGACTTTGGTAGCCTTTAAAGTCTACA
AAATCTCTGGGTTTCTCGGGTTCATATTTCAAGAGCTTTCCAGTTGGAAC
AGGGTTCATGCGGTGTACGATGAGTGCAGACAATTTCTGTGCTTTCTTTG
GATTCTTTTCTTCATTTGGTCCCTTTCTTTTCTTTGCTACTTCCTTGTGA
TAGGCAGCCCATTTAtctttatttgacatttttactagtattatttctat
tttcactaaaataaaggAAAACAGATTAAACAAGCTGGAAGTTGAATGGA
CCCAATAATAAAATGGAC Coding sequence (CDS) from alignment at scaffold_202:731363..732280 >TCONS_00051710 ID=TCONS_00051710|Name=TCONS_00051710|organism=Clytia hemisphaerica|type=CDS|length=915bp|location=Sequence derived from alignment at scaffold_202:731363..732280 (Clytia hemisphaerica)
GGCCATGTGCATCTGAACTTGCTTCCTTGTATGCTGTTCAAGGGACATTT
CATAAATTCTTGCGACTTTTTCCCAAGagctttttttaaactttttcacc
ACAAAAAAGTTAGGCTTGCCATCTTCAATATCATAAGCCATGAAAGCTTC
CCGGAAAGCCCCCTCCGAAAATTTTTCGGTTTTGATTGATAgagttttgt
tttcttttatccAAATTCTTGAAGAAATGTCATAAAATTCAAGTACtagt
tcattttttatttctgctGTGGGTTTTTGTAGTTTCCCAGCCTCGATGAC
ATCCCCAATAGAAACAGATTTAGGAAATGGTTGAGCAGGGGTTGGGTTTT
GATCTTTAACAATTTTGCTTGAAGTGCGTCTTCTTTTTGAGTAACACACA
GATGTTCTTGAAAGTGCAATTGATGACATATCCGAATTAGGTGAGACTGG
CATATTTATAGATTTTTCAGATGGTTGGATGAAACGTACAAGTATCACTT
TTTTACCAACAATTTGATCATCAGAATCACAACTTGGGCCCTTGTCACAA
AATAACACATCACAAGAGCCAGGTTTTTCACCATAAAACTTTTCACAGGC
AAGTTTAACATTCTTCAAACTCAGACTTTGGTAGCCTTTAAAGTCTACAA
AATCTCTGGGTTTCTCGGGTTCATATTTCAAGAGCTTTCCAGTTGGAACA
GGGTTCATGCGGTGTACGATGAGTGCAGACAATTTCTGTGCTTTCTTTGG
ATTCTTTTCTTCATTTGGTCCCTTTCTTTTCTTTGCTACTTCCTTGTGAT
AGGCAGCCCATTTAtctttatttgacatttttactagtattatttctatt
ttcactaaaataaaggAAAACAGATTAAACAAGCTGGAAGTTGAATGGAC
CCAATAATAAAATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051710-exon-scaffold_202-1491911889:731363..732280 | TCONS_00051710-exon-scaffold_202-1491911889:731363..732280 | Clytia hemisphaerica | exon |
| TCONS_00051710-exon-scaffold_202-1510915933:731363..732280 | TCONS_00051710-exon-scaffold_202-1510915933:731363..732280 | Clytia hemisphaerica | exon |
| TCONS_00051710-exon-scaffold_202-1575043694:731363..732280 | TCONS_00051710-exon-scaffold_202-1575043694:731363..732280 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:731363..732280 . |
Blast
The following BLAST results are available for this feature:
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