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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051662 ID=TCONS_00051662|Name=TCONS_00051662|organism=Clytia hemisphaerica|type=transcript|length=3992bpRun BLAST on NCBI transcript from alignment at scaffold_202:1160769..1180223- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051662 ID=TCONS_00051662|Name=TCONS_00051662|organism=Clytia hemisphaerica|type=transcript|length=19455bp|location=Sequence derived from alignment at scaffold_202:1160769..1180223- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00051662 vs. Swiss-Prot (Human)
Match: S23IP (SEC23-interacting protein OS=Homo sapiens GN=SEC23IP PE=1 SV=1) HSP 1 Score: 532.332 bits (1370), Expect = 3.315e-168 Identity = 308/799 (38.55%), Postives = 447/799 (55.94%), Query Frame = 1
Query: 685 VPPSNPEPSANNYYTPSQNMNQAPAMSGYQQQQALPTEYNISPFASMNTQQNLMHSVPKVTPHWFYLRTWTIHLPFYKKMTEWQVFSKADSHKLEHEYLLHRGTKNGGSVVVQTDGGRYDVDLNDMTRNSVYWKEEPSTVRRCTWFYK--EENQFLPYETEPAEKLEEEYLSMMSKGIFNIRVDISQNDFVLFHNPDTMVQY--SNNQDLQWTGEDAKTRPKIVRRGIADEVYQQIPQGEEGSIEHVVFVIHGIGPVADLRGRTIVECVDDLRRHSLHFTNNN-GFTIQGRPANRVEFFPIQWYSSIRDEKFGIDKQLEQLSLPSISKLRHFTNETLTDILFFTSPLYCQTIVDTVITEMNRIYKLFKSRNPTYNGTTSVCGHSLGSVIAFDILAXXXXXXXXXXXXXXXXPSSYENSGEVVEDTILXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTNMHDLLAKLNLLSLEQQFEDEQIDLDTLLMCQDGDLKDLGVPFGPRKKLVAYMKN------------------KDNPQPTSAQKNPSAPXXXXXXXXXXXXXXXSSDQSDLSL--KSAGSGTGQPVVTYKALDFQTDSLFALGSPIGLFLTTRGVTTLGLEYRLPFCNSFMNIFHPYDPVVYRLEPLVNEMIDIPPVLIPHHKGRKRFHLEIKDNITRVSAKVKSGIMDAVNRTWTSINDFARSHQPDYQPAHD-----DSLSVVGENEALDTTNTEEEMALKARENAL-DFGQLNSGKRVDFALQEKPFEILNEYLFALGSHTCYWTSEDVALLMLKQIYK 2988
+PP + P ++ +P+Q Q PA G P+ SPF N + V PHWFY + YK++ W FS DS LE Y + + SVV+ TDGGRYDV L D R + YW+EEP+ VRRCTWFYK +++F+PY E +EKLE EY ++ ++ R++ + ++ HNP +VQ+ S+ D T +D +TRP++V+RGI D + +IP GE ++H+VFV+HGIGPV DLR R+I+ECVDD R SL + ++ +RVEF P+ W+SS+ + G+D+ +++++LPSI + RHFTNETL DILF+ SP YCQTIV+ V E+N ++ LF SRNP + G SV GHSLGS+I FDIL+ NQ+ +N + P + VV+ ++ + +V + + L L+L FE E+ID+++LLMC DLK++G+P GPRKK+ ++++ Q SAQK + + + S + + +S G GQ V Y +LDF+ + FALGSPI +FLT RGV + Y LP C F NI+HP DPV YRLEP++ +D+ VLIPHHKGRKR HLE+K++++R+ + +K G + ++ W ++N+FAR+H Q + + + E + ++ E E+ L G LN G+R+D+ LQEKP E NEYLFAL SH CYW SED ALL+LK+IY+
Sbjct: 225 MPPGSLPPVPSSVQSPAQQ--QVPARPG------APSVQVPSPFLLQNQYE-------PVQPHWFYCKEVE-----YKQL--WMPFSVFDSLNLEEIY--NSVQPDPESVVLGTDGGRYDVYLYDRIRKAAYWEEEPAEVRRCTWFYKGDTDSRFIPYTEEFSEKLEAEYKKAVTTNQWHRRLEFPSGETIVMHNPKVIVQFQPSSVPDEWGTTQDGQTRPRVVKRGIDDNL-DEIPDGEMPQVDHLVFVVHGIGPVCDLRFRSIIECVDDFRVVSLKLLRTHFKKSLDDGKVSRVEFLPVHWHSSLGGDATGVDRNIKKITLPSIGRFRHFTNETLLDILFYNSPTYCQTIVEKVGMEINHLHALFMSRNPDFKGGVSVAGHSLGSLILFDILS------NQKDLNLSKCPGPLAVANGVVKQLHF---QEKQMPEEPKLTLDESYDLVVENKEVLTLQETLEALSLSEYFSTFEKEKIDMESLLMCTVDDLKEMGIPLGPRKKIANFVEHKAAKLKKAASEKKAVAATSTKGQEQSAQKTKDMASLPSESNEPKRKLPVGACVSSVCVNYESFEVGAGQVSVAYNSLDFEPEIFFALGSPIAMFLTIRGVDRIDENYSLPTCKGFFNIYHPLDPVAYRLEPMIVPDLDLKAVLIPHHKGRKRLHLELKESLSRMGSDLKQGFISSLKSAWQTLNEFARAHTSSTQLQEELEKVANQIKEEEEKQVVEAEKVVESPDFSKDEDYLGKVGMLNGGRRIDYVLQEKPIESFNEYLFALQSHLCYWESEDTALLLLKEIYR 989 The following BLAST results are available for this feature:
BLAST of TCONS_00051662 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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