TCONS_00051766 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051766
Unique NameTCONS_00051766
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length361

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051766 ID=TCONS_00051766|Name=TCONS_00051766|organism=Clytia hemisphaerica|type=transcript|length=361bp
CCTTTGAACGTTTGGAGTGTTGGTAATCCTGGAATCATTGGCTACTTGAA
CTCGATTTCACATTTGATGGACCATCGCAAGATAGCAGGCTTAACAAACA
ATAACCCTCAAACTTTGATTGCATCGGAAGTTTTTCTGAATAGAATGAAA
AAGTCGTTAAACAAGAAAATGCGCGCTAGCTGGTTGACACTTTTGTCAGT
TGACCACTTCAAAGAAACTGGTTGCTGGGCAACTCTCGAAGAAATGCAAC
AAGTGATACCATTTCACGGAGAGAGATTTGCACAGCTGGTACTTATGGCG
AACAACAAAGAAAGCTTTATACCCTCGCATGAACTTTCTTTTGCCACATC
TTTCATTATCG
Run BLAST on NCBI

protein sequence of TCONS_00051766-protein

>TCONS_00051766-protein ID=TCONS_00051766-protein|Name=TCONS_00051766-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
PLNVWSVGNPGIIGYLNSISHLMDHRKIAGLTNNNPQTLIASEVFLNRMK
KSLNKKMRASWLTLLSVDHFKETGCWATLEEMQQVIPFHGERFAQLVLMA
NNKESFIPSHELSFATSFII
Run BLAST on NCBI

transcript from alignment at scaffold_204:43896..44256

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051766 ID=TCONS_00051766|Name=TCONS_00051766|organism=Clytia hemisphaerica|type=transcript|length=361bp|location=Sequence derived from alignment at scaffold_204:43896..44256 (Clytia hemisphaerica)
CGATAATGAAAGATGTGGCAAAAGAAAGTTCATGCGAGGGTATAAAGCTT
TCTTTGTTGTTCGCCATAAGTACCAGCTGTGCAAATCTCTCTCCGTGAAA
TGGTATCACTTGTTGCATTTCTTCGAGAGTTGCCCAGCAACCAGTTTCTT
TGAAGTGGTCAACTGACAAAAGTGTCAACCAGCTAGCGCGCATTTTCTTG
TTTAACGACTTTTTCATTCTATTCAGAAAAACTTCCGATGCAATCAAAGT
TTGAGGGTTATTGTTTGTTAAGCCTGCTATCTTGCGATGGTCCATCAAAT
GTGAAATCGAGTTCAAGTAGCCAATGATTCCAGGATTACCAACACTCCAA
ACGTTCAAAGG

Coding sequence (CDS) from alignment at scaffold_204:43896..44256

>TCONS_00051766 ID=TCONS_00051766|Name=TCONS_00051766|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at scaffold_204:43896..44256 (Clytia hemisphaerica)
GATAATGAAAGATGTGGCAAAAGAAAGTTCATGCGAGGGTATAAAGCTTT
CTTTGTTGTTCGCCATAAGTACCAGCTGTGCAAATCTCTCTCCGTGAAAT
GGTATCACTTGTTGCATTTCTTCGAGAGTTGCCCAGCAACCAGTTTCTTT
GAAGTGGTCAACTGACAAAAGTGTCAACCAGCTAGCGCGCATTTTCTTGT
TTAACGACTTTTTCATTCTATTCAGAAAAACTTCCGATGCAATCAAAGTT
TGAGGGTTATTGTTTGTTAAGCCTGCTATCTTGCGATGGTCCATCAAATG
TGAAATCGAGTTCAAGTAGCCAATGATTCCAGGATTACCAACACTCCAAA
CGTTCAAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032774XLOC_032774Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051766-exon-scaffold_204-1491911889:43896..44256TCONS_00051766-exon-scaffold_204-1491911889:43896..44256Clytia hemisphaericaexon
TCONS_00051766-exon-scaffold_204-1510915933:43896..44256TCONS_00051766-exon-scaffold_204-1510915933:43896..44256Clytia hemisphaericaexon
TCONS_00051766-exon-scaffold_204-1575043694:43896..44256TCONS_00051766-exon-scaffold_204-1575043694:43896..44256Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051766-proteinTCONS_00051766-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_204supercontigscaffold_204:43896..44256 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.233406	0	0	0	0	0.248729	0.30008	0.280932	0.196687	0.243628	0	0	0.776155	0.806045	0.265071	0.196679	0	0	1.87248	3.85248	0	0	0	0	0	0.447305	0.320046	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051766 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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