|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051938 ID=TCONS_00051938|Name=TCONS_00051938|organism=Clytia hemisphaerica|type=transcript|length=1821bp
CTTTTTTGATTGATCAAACGAAATGTATTGTCAGATTAAGGACGTGAAAC
AAAGCAGGTGCAATATTTAAGCTCCTATAAAAGCAAACCAAATATGAGAT
AATTTTATCAGTCTTTTTTataactgaaaattgaaacaacaAAACCTGCA
AAAACAATGTTGGGGATCAATACAAGTTCAATAGAATATAAAATGGTTGT
GATGACTTCAAAAGCATCACAATTTATGATGGAGAACATTTTTCCTGTTG
CTTTTGTTATTGGGAGCTTTTGGAATATTCTAATTATTATCTATTTTGTG
AAAATcaatgctaaaaaaataaagaaaatgagctCTTATCATTTTCTTAT
CGTTAATTTGGCTATCGCTGACCTTATGACAAGCGGAGGAGTTGCACTTG
TTGCTTATAACTTGAACAACTGGCGATTGGGGAAATTTGCCTGCTCATTT
CTTTTTGACATGTTCATCAAAGTTTGTCCAACCGtttcttgttttatttt
ggtttttatttcataCATCAGGTACCGTGTCATCGCGTACCCCTTTGAAC
GGAGAATCAATAAGAAGCAATGCAGCTTAGTCTGTTTAGCTATATGGATT
GTAGCTATTCTCTTGTATATATATCTCTTCATCAATCGTCGACTTGTAAA
GGTTGGTGAAGATTTGCAATGTGTTGTCGAGAATAATATTATTAACAAAC
GATTTTTGATCAATCTTGCTATCGGTAGTTTATTAGATAGCTTCTTACCT
TCTTTCTCGATGTACCGTTTCTATCGCATGATTTCAAAGAAATTGGAAGC
TGATGAAAATTCAAATACATTACAAATACATGAACAAAGCCGTCAACGAA
ATAGAAGAGCCGTGAGAACTATCAAAGCTTTAATCATGTTGTACGCAATT
GCCGTAATCCCTGGTCGAATCACAGATATATTGCTTACTGTGCATTTGTA
TGTAGTTATAAACAAATTTCTGACCGCAGTCCCATTACTGGTGAGCTTTC
ATCACATTATGTATGTGATCACATCCTTTTGTATACACCTTAacaacatt
ttgaattttttcatttacGCAAGGATGATTCCTGGCTTCCAGACGTTTCT
TCTAAGATTATTTACATGTGGGAGTTGCGGCAGTAGCAATTCAATACACT
AGTTTGCGAATTCAATATCAGGCAttatacagtcaactctctctaattcg
aacctctatttaTTATTCAAATCTTGTCTGTTAATtcatttttgggcatt
ttcaTCCGTTTTCCGAAGAattcgggtgttttagagttaattCTGAATTG
CTGAAGGTCGGGTAAGAGAGAGTTAGGAGTTAACTGTATACGCTCAACTG
TACACGCTATTTATAAATGTAATCAActataattttataattttatatga
aagcattttcatatttctCTAACGAAATTGTCATGATTATAACAAccagg
gggtactagggttgtgagctgacgggtatgtgccacccGATTTTCCACTC
Tcagacccttaccgggactaaaaaggaggaatcccagctgacacacaacg
ttgtttcaacgttcatccaacgttatatggatgttgtgaatattggaaaa
acgttgaaacgactttgtgtgccagctgggatgaaCGAAAAATTTGTGAA
TTTTACAACCTTTATTAGGACTTCTCCGACCCTTCGGACTGAGATTTACT
TTGCTGATAATTTTTCAACCCGTACAGGGTCTGCCATACTCTAAAAAGTC
ACCCTTAACGGCGGCACATACATGTACCCTTCACTTGCCTTGGTACTTCC
AGTCTAGACAAACCAGACaag Run BLAST on NCBI protein sequence of TCONS_00051938-protein >TCONS_00051938-protein ID=TCONS_00051938-protein|Name=TCONS_00051938-protein|organism=Clytia hemisphaerica|type=polypeptide|length=331bp
MLGINTSSIEYKMVVMTSKASQFMMENIFPVAFVIGSFWNILIIIYFVKI
NAKKIKKMSSYHFLIVNLAIADLMTSGGVALVAYNLNNWRLGKFACSFLF
DMFIKVCPTVSCFILVFISYIRYRVIAYPFERRINKKQCSLVCLAIWIVA
ILLYIYLFINRRLVKVGEDLQCVVENNIINKRFLINLAIGSLLDSFLPSF
SMYRFYRMISKKLEADENSNTLQIHEQSRQRNRRAVRTIKALIMLYAIAV
IPGRITDILLTVHLYVVINKFLTAVPLLVSFHHIMYVITSFCIHLNNILN
FFIYARMIPGFQTFLLRLFTCGSCGSSNSIH Run BLAST on NCBI transcript from alignment at scaffold_206:28012..29832 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051938 ID=TCONS_00051938|Name=TCONS_00051938|organism=Clytia hemisphaerica|type=transcript|length=1821bp|location=Sequence derived from alignment at scaffold_206:28012..29832 (Clytia hemisphaerica)
cttGTCTGGTTTGTCTAGACTGGAAGTACCAAGGCAAGTGAAGGGTACAT
GTATGTGCCGCCGTTAAGGGTGACTTTTTAGAGTATGGCAGACCCTGTAC
GGGTTGAAAAATTATCAGCAAAGTAAATCTCAGTCCGAAGGGTCGGAGAA
GTCCTAATAAAGGTTGTAAAATTCACAAATTTTTCGttcatcccagctgg
cacacaaagtcgtttcaacgtttttccaatattcacaacatccatataac
gttggatgaacgttgaaacaacgttgtgtgtcagctgggattcctccttt
ttagtcccggtaagggtctgAGAGTGGAAAATCgggtggcacatacccgt
cagctcacaaccctagtaccccctggTTGTTATAATCATGACAATTTCGT
TAGagaaatatgaaaatgctttcatataaaattataaaattatagTTGAT
TACATTTATAAATAGCGTGTACAGTTGAGCGTATACAGTTAACTCCTAAC
TCTCTCTTACCCGACCTTCAGCAATTCAGaattaactctaaaacacccga
atTCTTCGGAAAACGGAtgaaaatgcccaaaaatgaATTAACAGACAAGA
TTTGAATAAtaaatagaggttcgaattagagagagttgactgtataaTGC
CTGATATTGAATTCGCAAACTAGTGTATTGAATTGCTACTGCCGCAACTC
CCACATGTAAATAATCTTAGAAGAAACGTCTGGAAGCCAGGAATCATCCT
TGCgtaaatgaaaaaattcaaaatgttgtTAAGGTGTATACAAAAGGATG
TGATCACATACATAATGTGATGAAAGCTCACCAGTAATGGGACTGCGGTC
AGAAATTTGTTTATAACTACATACAAATGCACAGTAAGCAATATATCTGT
GATTCGACCAGGGATTACGGCAATTGCGTACAACATGATTAAAGCTTTGA
TAGTTCTCACGGCTCTTCTATTTCGTTGACGGCTTTGTTCATGTATTTGT
AATGTATTTGAATTTTCATCAGCTTCCAATTTCTTTGAAATCATGCGATA
GAAACGGTACATCGAGAAAGAAGGTAAGAAGCTATCTAATAAACTACCGA
TAGCAAGATTGATCAAAAATCGTTTGTTAATAATATTATTCTCGACAACA
CATTGCAAATCTTCACCAACCTTTACAAGTCGACGATTGATGAAGAGATA
TATATACAAGAGAATAGCTACAATCCATATAGCTAAACAGACTAAGCTGC
ATTGCTTCTTATTGATTCTCCGTTCAAAGGGGTACGCGATGACACGGTAC
CTGATGtatgaaataaaaaccaaaataaaacaagaaaCGGTTGGACAAAC
TTTGATGAACATGTCAAAAAGAAATGAGCAGGCAAATTTCCCCAATCGCC
AGTTGTTCAAGTTATAAGCAACAAGTGCAACTCCTCCGCTTGTCATAAGG
TCAGCGATAGCCAAATTAACGATAAGAAAATGATAAGagctcattttctt
tatttttttagcattgATTTTCACAAAATAGATAATAATTAGAATATTCC
AAAAGCTCCCAATAACAAAAGCAACAGGAAAAATGTTCTCCATCATAAAT
TGTGATGCTTTTGAAGTCATCACAACCATTTTATATTCTATTGAACTTGT
ATTGATCCCCAACATTGTTTTTGCAGGTTTtgttgtttcaattttcagtt
atAAAAAAGACTGATAAAATTATCTCATATTTGGTTTGCTTTTATAGGAG
CTTAAATATTGCACCTGCTTTGTTTCACGTCCTTAATCTGACAATACATT
TCGTTTGATCAATCAAAAAAG Coding sequence (CDS) from alignment at scaffold_206:28012..29832 >TCONS_00051938 ID=TCONS_00051938|Name=TCONS_00051938|organism=Clytia hemisphaerica|type=CDS|length=996bp|location=Sequence derived from alignment at scaffold_206:28012..29832 (Clytia hemisphaerica)
CTAGTGTATTGAATTGCTACTGCCGCAACTCCCACATGTAAATAATCTTA
GAAGAAACGTCTGGAAGCCAGGAATCATCCTTGCgtaaatgaaaaaattc
aaaatgttgtTAAGGTGTATACAAAAGGATGTGATCACATACATAATGTG
ATGAAAGCTCACCAGTAATGGGACTGCGGTCAGAAATTTGTTTATAACTA
CATACAAATGCACAGTAAGCAATATATCTGTGATTCGACCAGGGATTACG
GCAATTGCGTACAACATGATTAAAGCTTTGATAGTTCTCACGGCTCTTCT
ATTTCGTTGACGGCTTTGTTCATGTATTTGTAATGTATTTGAATTTTCAT
CAGCTTCCAATTTCTTTGAAATCATGCGATAGAAACGGTACATCGAGAAA
GAAGGTAAGAAGCTATCTAATAAACTACCGATAGCAAGATTGATCAAAAA
TCGTTTGTTAATAATATTATTCTCGACAACACATTGCAAATCTTCACCAA
CCTTTACAAGTCGACGATTGATGAAGAGATATATATACAAGAGAATAGCT
ACAATCCATATAGCTAAACAGACTAAGCTGCATTGCTTCTTATTGATTCT
CCGTTCAAAGGGGTACGCGATGACACGGTACCTGATGtatgaaataaaaa
ccaaaataaaacaagaaaCGGTTGGACAAACTTTGATGAACATGTCAAAA
AGAAATGAGCAGGCAAATTTCCCCAATCGCCAGTTGTTCAAGTTATAAGC
AACAAGTGCAACTCCTCCGCTTGTCATAAGGTCAGCGATAGCCAAATTAA
CGATAAGAAAATGATAAGagctcattttctttatttttttagcattgATT
TTCACAAAATAGATAATAATTAGAATATTCCAAAAGCTCCCAATAACAAA
AGCAACAGGAAAAATGTTCTCCATCATAAATTGTGATGCTTTTGAAGTCA
TCACAACCATTTTATATTCTATTGAACTTGTATTGATCCCCAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051938-exon-scaffold_206-1491911889:28012..29832 | TCONS_00051938-exon-scaffold_206-1491911889:28012..29832 | Clytia hemisphaerica | exon |
| TCONS_00051938-exon-scaffold_206-1510915933:28012..29832 | TCONS_00051938-exon-scaffold_206-1510915933:28012..29832 | Clytia hemisphaerica | exon |
| TCONS_00051938-exon-scaffold_206-1575043694:28012..29832 | TCONS_00051938-exon-scaffold_206-1575043694:28012..29832 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_206 | supercontig | scaffold_206:28012..29832 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
|
