TCONS_00052031 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052031
Unique NameTCONS_00052031
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length454

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052031 ID=TCONS_00052031|Name=TCONS_00052031|organism=Clytia hemisphaerica|type=transcript|length=454bp
gacGTCTGGTGAGCTGCTTTGGAATGATGTTGATTGTGTTTGACGGTTTC
TTCCCACGTTGCTTCTTGGCGAAGTTGAGATCACCAATGTTGATTGATAA
TTTATCTTCTTTCACATGCCACCGCATTCCACCAACAAAAATGGTATCCN
TGATTGAGTTTTCGAAGCTGCTGGCGATAAACTTTCATAGCCTGGTCTTT
GTTTGGAGCAAGTTTGATTACTGGGTTGTCGATGAATGGAAGAGTGGCTG
AAGTGGTTGAAGTTTCTAGGTTGACAGAAACTGATGACTCGATGAGGCTC
TGTTCAACCTCTTCTTTGATACTGATTGCATGATTTGTTTCGTGGTTTTT
ACATGAAGTACATATTCGACATGTTGGACATCTGTAGCTAATCTCGCTTC
CAGTAGATTCGACTTCCTCGAAGACTCTTTGTAGCTTGGATAGATGTGAT
TGAG
Run BLAST on NCBI

protein sequence of TCONS_00052031-protein

>TCONS_00052031-protein ID=TCONS_00052031-protein|Name=TCONS_00052031-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
QSHLSKLQRVFEEVESTGSEISYRCPTCRICTSCKNHETNHAISIKEEVE
QSLIESSVSVNLETSTTSATLPFIDNPVIKLAPNKDQAMKVYRQQLRKLN
XGYHFCWWNAVACERR
Run BLAST on NCBI

transcript from alignment at scaffold_208:353574..354027

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052031 ID=TCONS_00052031|Name=TCONS_00052031|organism=Clytia hemisphaerica|type=transcript|length=454bp|location=Sequence derived from alignment at scaffold_208:353574..354027 (Clytia hemisphaerica)
CTCAATCACATCTATCCAAGCTACAAAGAGTCTTCGAGGAAGTCGAATCT
ACTGGAAGCGAGATTAGCTACAGATGTCCAACATGTCGAATATGTACTTC
ATGTAAAAACCACGAAACAAATCATGCAATCAGTATCAAAGAAGAGGTTG
AACAGAGCCTCATCGAGTCATCAGTTTCTGTCAACCTAGAAACTTCAACC
ACTTCAGCCACTCTTCCATTCATCGACAACCCAGTAATCAAACTTGCTCC
AAACAAAGACCAGGCTATGAAAGTTTATCGCCAGCAGCTTCGAAAACTCA
ATCANGGATACCATTTTTGTTGGTGGAATGCGGTGGCATGTGAAAGAAGA
TAAATTATCAATCAACATTGGTGATCTCAACTTCGCCAAGAAGCAACGTG
GGAAGAAACCGTCAAACACAATCAACATCATTCCAAAGCAGCTCACCAGA
Cgtc

Coding sequence (CDS) from alignment at scaffold_208:353574..354027

>TCONS_00052031 ID=TCONS_00052031|Name=TCONS_00052031|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at scaffold_208:353574..354027 (Clytia hemisphaerica)
CAATCACATCTATCCAAGCTACAAAGAGTCTTCGAGGAAGTCGAATCTAC
TGGAAGCGAGATTAGCTACAGATGTCCAACATGTCGAATATGTACTTCAT
GTAAAAACCACGAAACAAATCATGCAATCAGTATCAAAGAAGAGGTTGAA
CAGAGCCTCATCGAGTCATCAGTTTCTGTCAACCTAGAAACTTCAACCAC
TTCAGCCACTCTTCCATTCATCGACAACCCAGTAATCAAACTTGCTCCAA
ACAAAGACCAGGCTATGAAAGTTTATCGCCAGCAGCTTCGAAAACTCAAT
CANGGATACCATTTTTGTTGGTGGAATGCGGTGGCATGTGAAAGAAGATA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032947XLOC_032947Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052031-proteinTCONS_00052031-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052031-exon-scaffold_208-1491911889:353574..354027TCONS_00052031-exon-scaffold_208-1491911889:353574..354027Clytia hemisphaericaexon
TCONS_00052031-exon-scaffold_208-1510915933:353574..354027TCONS_00052031-exon-scaffold_208-1510915933:353574..354027Clytia hemisphaericaexon
TCONS_00052031-exon-scaffold_208-1575043694:353574..354027TCONS_00052031-exon-scaffold_208-1575043694:353574..354027Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_208supercontigscaffold_208:353574..354027 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.68778	0.903814	1.12923	1.5777	1.98263	1.08881	0.744368	1.20832	0.441109	2.26783	0.506399	0.454042	0.586202	0.793318	0.305271	0.176483	0.397853	0.244726	0.153933	1.0187	0.321265	0.204873	0	0.731624	0.466419	0.416268	0.401895	0.298237	1.25157	0.630249
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052031 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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