TCONS_00052078 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052078
Unique NameTCONS_00052078
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1985

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052078 ID=TCONS_00052078|Name=TCONS_00052078|organism=Clytia hemisphaerica|type=transcript|length=1985bp
taggtGGAAAGATATTATGATGACGTACAAAAGCTTGATGATATGTTTAG
CTCTGTCCTTGATTGTAAACATCAATATCGTCACTGCTGGTGGGAAGAGA
AGGGgTAGCAAAGATGTGATGGTGGAGCGAGAAATTGTAGACACCATCTT
AGATGGATATAATCTTGATATTCGACCTGAGATCAAGCATGGTGAACCTT
TACATGttcattttgaaatgaaattacaaaaaatcGTAAGATTGGACGTC
AAACATCAATTATTCACTATCAACTCCTTCGTTCGTATGAAATGGATAGA
CACACAATTATCATGGAACAAAACAGAATTTGAAAACATCGATAAAACGA
ACGTCGGTACAGACATGATTTGGACACCTGATGTCGTGCTTTATAATTCC
GCTACTGAAGAAAGCTTTGCACATACCGACCTGTACAAGACGAAAGCTCT
TGTTTTTCATGACGGTTTGGTGTTATGGACGGCTCCAGTCACGTGGCAAG
TTTCATGCTCTTTTGATGTCACGTGGTTTCCTATTGACAGGCAGATTTGC
ACACTAACATTTGGATCATGGTCATACATGAGCTCACAattgaaattatc
tttttatgAGAATATCAGCCCTGGTGAAATCAACCATGAGCAATTCAGCG
TCAAAAGTGGTGAATGGGAGATTGAAGATATCGAAATGTCATCTGGTACA
GTCAAATACAGTTGTTGTCCAGACCCTTTCTCAGTCATCAAATATCGTTT
CTCGTTGCGTCGAATGGCTTTGTACTATTTTCTATACATTATATTACCGT
TGGTTTCGcaggtatttttatttttaatggtGTTTCATATCCCATGTGAA
AATGGGGAACGGATGGGATTTGGTGTCACTATTCTGTTGAGTATTACCGT
ATACCTTTTGGTCATTTCCGAGAAATTACCGGAGAAATCCGATGACCGAC
CAATGTTGGGAATCTGCTTCATCATTGAATTCTACATTTTGAGTTTTGCT
TTGGTTGTTGCAGCGATTATTGTGAAATTATCGAATAGAACTTCAACACC
GCCTCactttttgttgcgtttttgcGGTACCAGTAAATCGATTTGTTGTG
GAGCTGGCCATCAAACTACAACGAAAAACCACGCGAATAAAAAGGAATCG
ATTGAAATGCACGAAGCAAATGGTTATTTACATAGCAAAGACGAAGGAAC
GCGATTCTTACATCAACGCAAAACGCAGCCAGTTGCGGAACAGCAGCCGC
CGGTTGTCGCTCAGCCGCTGGAAATGGATGAAGAAGAAATTAATCGTAAA
CTCTGGAGAAAGATTTGTAATAGCCTCGATCGCATGTGTTTTTATGGGTT
tggttttatttctatttttgctCCTGTTTTGGTTGTTGCTTTACTGGATC
ATCGTATGATGGGCGTGTAGATTTTGAGGCCCGGAATAATGAAGATAGGC
TGATTGTGATAGAGGGTtggatttgaaattgaaatcgaGGACATGATATT
CAGATTCAAAATATAACATGATTTTGATTAAATGTTATGGTTGTAATACA
CTTTACTCCCCGTGATTAAGATTGGATAATTACTTTCCCATAAAAACAGT
ACCGTCGATTGTATTCGAATATCTAAAAACATGAACATTTTTCTGAAATG
ATTTTGCTTTGGAACTGATGTTTCTATCTCATTTTAAATTGAGAAGCCGC
tggagaaaatgaaattataaaaTCCTGAACAAACGGTATTACGAAGTGAA
ATgttcaaagtatctcaagaaAACATTTATAACATTCAGGAAAATGATTA
GTCAACGATGAATTACGTCTAAaattaaattatcaaaaaattttcttcaa
ttttagctttttcttcatattttatATATACTTTTTGCCCTTCTTTATTT
GGTACAATACTTCTATATTATTATGTTACATGCTAGAAAttatttaagaa
aaagaaaatctatttTACCATATTTATTTTGCATT
Run BLAST on NCBI

protein sequence of TCONS_00052078-protein

>TCONS_00052078-protein ID=TCONS_00052078-protein|Name=TCONS_00052078-protein|organism=Clytia hemisphaerica|type=polypeptide|length=472bp
RWKDIMMTYKSLMICLALSLIVNINIVTAGGKRRGSKDVMVEREIVDTIL
DGYNLDIRPEIKHGEPLHVHFEMKLQKIVRLDVKHQLFTINSFVRMKWID
TQLSWNKTEFENIDKTNVGTDMIWTPDVVLYNSATEESFAHTDLYKTKAL
VFHDGLVLWTAPVTWQVSCSFDVTWFPIDRQICTLTFGSWSYMSSQLKLS
FYENISPGEINHEQFSVKSGEWEIEDIEMSSGTVKYSCCPDPFSVIKYRF
SLRRMALYYFLYIILPLVSQVFLFLMVFHIPCENGERMGFGVTILLSITV
YLLVISEKLPEKSDDRPMLGICFIIEFYILSFALVVAAIIVKLSNRTSTP
PHFLLRFCGTSKSICCGAGHQTTTKNHANKKESIEMHEANGYLHSKDEGT
RFLHQRKTQPVAEQQPPVVAQPLEMDEEEINRKLWRKICNSLDRMCFYGF
GFISIFAPVLVVALLDHRMMGV
Run BLAST on NCBI

transcript from alignment at scaffold_21:36563..41937-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052078 ID=TCONS_00052078|Name=TCONS_00052078|organism=Clytia hemisphaerica|type=transcript|length=5375bp|location=Sequence derived from alignment at scaffold_21:36563..41937- (Clytia hemisphaerica)
TAGGTGGAAAGATATTATGATGACGTACAAAAGCTTGATGATATGTTTAG
CTCTGTCCTTGATTGTAAACATCAATATCGTCACTGCTGGTGGGAAGAGA
AGGGGTATGAATTATACTTACAATTTATCTCTTTTTGTATTAAAGCATGG
ATATCTTTTTCCAAGACACGTATTTCTTTTAAAATTCCCACATAGTCAAG
ACGGTGTAGACACAATACATCTTTTCGACCGTAGCCGCCAATTACCGCGC
AGGCATTCTTTTTCGTTTTACCACCCTAAAATCGTATCAGTCTTTTTTTC
GCACCTAAAGACAATAGGAAAAAGTGTAAAAATAGAATTGGAGTAAGTTT
AGGGTGGAAAATTAATTAATAAAGTGGCACGCGCCTGACCGCGCGACTAC
GATCGAAAAGGTGGTATACCGCCACTTATGAATTTCATATTTCACATGAA
TGGATTTTGATTTTCGTTGTGGAAAAGTTTATACTAATGCTATTCTCGCC
ATCCTTAAAAAAGATTTTATCCTTACAATACGAAAAATTGTGTTTCGTTC
ATCTCAGCTCCCACGTGATTTTAGGACAGCCTGTTATACATGCTTGTGTT
CTTTCTTTCTTTTTAAAGGTAGCAAAGATGTGATGGTGGAGCGAGAAATT
GTAGACACCATCTTAGATGGATATAATCTTGATATTCGACCTGAGATCAA
GCATGGTGAACCTTTACATGTTCATTTTGAAATGAAATTACAAAAAATCG
TAAGATTGGTAAGTTCTAACACACATGTCGACTCATTCGTCTAGTAGCGT
ATATGGGCTGATAGGTAATAGAGATAATCCTGAAAAATCCTATTTTTTTT
TCAAAATTTCTTCATTCTGAATGGATTTCAGTGCAAAAAAGCAAGTTTAT
TACACTATCCATAGAATCATTGCTACAATCATTTTGCTACACAAAATAAC
AGAACTTTTTTTGAATTTTAAGTTGTCAGGAGGTAAAAGCTAAAATGCGC
AATATATTTCAATATTTCAGAAGAGTAAACACGTCACTTGGAAGAGATTG
AGCTAAGACTTTTTTTGGTCTTCGAAAAGAGATTATACTTCTGAAAAATG
CAAATTCTGTTTAAAAACATAGTAAAAGTTCTTGAAATTCAACGAATTCG
GCCTAACTTAGCGATTGTAAAACCTCCGCTTGTTAATTTTTCGAAAATTT
TCCAACCCCCCGGACCTTATTAGGACCAACCACCCCCCTCCCCCGTTTGT
TAATTTTTAAGAATTTTTTCAGCTTTCAAAGAGAAGGTCCCTTATTCTGC
TCTAAATGGCCTGATTTTAGCCTATATTTACCTTATTTTGGGGTTTTCGC
AAGTACAATTTCCAACCCCCCGGCAATAAGGTCCCCCCCTGTTCATCAGA
ATTTTGGAAATTTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCCCCCCCCATTTATTCGACCCGTTTATT
TGGAACCTAAGAGTACACGGAACTAGATTAAGATTGACCCAAAGCTGATT
GACAGCTTGGAAAATGTTTATGTTGAAGAATTATCAAAAGTTTCTATCCC
CACGACTTACCTTTTTAAGGCTTATACTTCGATTTTCAAGAGTGTTAACA
TTTAATAATTTTAATGTTAATCAAATTTTTAGGACGTCAAACATCAATTA
TTCACTATCAACTCCTTCGTTCGTATGGTAAGTCTACCTTTTAAGGGGTT
GAACCTTACAGTGAAAATTTAACTTCATTGAATAGACCGAATCACTTTTA
ATACTTTTTTTTACATAGAATTCCAAGATAAGGGATCAAATTCTTAGAAA
TAATGTAACAACCACTTCTCACAGACCAAGTGGGACCCATGGGAAAAATT
GACCAAAATATCATCCCCGATGAAAAATTATCATTCAATTTTTCGCCCCA
CTTAAAATAATCGAATAAACCAATCCTCACTGCAAAATAATATACTATTT
TTTCCTCATTGAATTTTCTGACTTCAAAAGAAATGAAATCTCAAGCCATA
GAAAATATGAGAATATCATTCCCCATTGAGTTTCAGTCCCTTATTTTTGT
CCTCACTGGTTGAAAAAATCCTACCGGGTCTGTGAGAAGTGGTTGTACTA
TATAACACAGCTGATGATTGAACAACGTGAACCTTCAAATACTATATAGC
AAATTGTGTGTTTTTTTCTAAAATTAAATACACCAAGTTGACGAAAAAAA
TGTTCTATTGCTATCTTAGAAATGGATAGACACACAATTATCATGGAACA
AAACAGAATTTGAAAACATCGATAAAACGAACGTCGGTACAGACATGATT
TGGACACCTGATGTCGTGCTTTATAATTCGTAAGCAACTTACTTTTTTAT
AATCAGAATTTACGTTTAAGAGGTACAAAGGAATGGAATCCCTGTTCAAA
TTTCAAATTAGCTGCTATGAAGTGGTAGTTCGGAAGATTTTGTTCGTTTT
GTTACTTTCCCTCGGTGAAGTTTTTTTTTAAGACCTGTTAGAAATGTACA
TGACTTTTCTTGGAGATCTTTTCTTTCGTATTTCTATCCCTTATTTTAAG
CTTCCGTAGTTGTACCAAAGGTCTTTTTTCGAGTTGCATTATTTTCGAAT
GATATGAGTTTGGAAAGCACCAGTTATAATTCACAACTATCGTTCTAGCG
CTACTGAAGAAAGCTTTGCACATACCGACCTGTACAAGACGAAAGCTCTT
GTTTTTCATGACGGTTTGGTGTTATGGACGGCTCCAGTCACGTGGCAAGT
TTCATGCTCTTTTGATGTCACGTGGTTTCCTATTGACAGGCAGGTAAGAA
GACTTTCACATTTGGCAAACTCGAACCCAGTCCCTTTGTTCGTTTTCGAA
TGTCCCCTTAACTCGAACAAGTTTTTTTGTCCCTTCAAGTTGACAATGCC
TTATAAACCTTAACCCTGAACTCAAAATTTCCTTAACTCAAACAAATTTG
TGTTTTCCTTGCGTGTTTGATTTATGTAGACTCCACTACCATCAATAAAT
AGGTTAACAAATTAATGGACATATAACTGGTAATAACAAAGTCAATAATA
TAAAATAGTCGGGTAACTTAACCAAAGCATATCAATTTCCATTTTAAAAC
ATGTTTCGATATTTTAAATCTTCATTGGTAATTTAGTTCTAAAAATAAAC
AAAAATTTGGTTATCAAATGTTTATCATTAAAACAGATATCAGATAAATA
TAGAATGTACAATCATATAAAATCAATTTTTCAAAGTTTTCTGAATGTTG
AGTACACCCCTCAAACGTTCATTCCAAAGATATTCTCGCTCAGATAGGGA
ATATATGCTTTCCAAAAATTAGACAGCAAAGTCGGATTTCTCCTTTCCCA
TGTTTTAGAGTGCTCTAAGATAACTGGTAATGTTTACTGAGGATATCTGA
TATAAAATAATTTTGTTGGTGTTTAGAACCACAGTGAAGACCTGTCCTCT
CAATATTATTTTCTCTCTTTCAGATTTGCACACTAACATTTGGATCATGG
TCATACATGAGCTCACAATTGAAATTATCTTTTTATGAGAATATCAGCCC
TGGTGAAATCAACCATGGTATGTACAACCATTCTTTGTCAAATTTTTCAT
TCTTTCGTTTCTATATGGCATCACGCACTGTAGGGGAATTTAAGTGCAAG
GGTTGGAAACCACCATAAGAATCTTATTGATAAAGCCTATATTGATTATA
GGTTTTCGTTTAAATACTTGAGACAGGTGTAAGGATATGTAGGGTTTTAT
AAAAGCTCGAAGCCATCACGCTTTCAAAACTTGAAAGGACTATTTTACTG
TGTCATCAACGAGCATGATTTAAAAAAAGAAGGTTACTTCCAATTGTATC
ATAATTTCCATTCCCACTTTCTTTTCAGAGCAATTCAGCGTCAAAAGTGG
TGAATGGGAGATTGAAGATATCGAAATGTCATCTGGTACAGTCAAATACA
GTTGTTGTCCAGACCCTTTCTCAGTCATCAAATATCGTTTCTCGTTGCGT
CGAATGGCTTTGTACTATTTTCTATACATTATATTACCGTTGGTTTCGCA
GGTATTTTTATTTTTAATGGTGTTTCATATCCCATGTGAAAATGGGGAAC
GGATGGGATTTGGTGTCACTATTCTGTTGAGTATTACCGTATACCTTTTG
GTCATTTCCGAGAAATTACCGGAGAAATCCGATGACCGACCAATGTTGGG
AATCTGCTTCATCATTGAATTCTACATTTTGAGTTTTGCTTTGGTTGTTG
CAGCGATTATTGTGAAATTATCGAATAGAACTTCAACACCGCCTCACTTT
TTGTTGCGTTTTTGCGGTACCAGTAAATCGATTTGTTGTGGAGCTGGCCA
TCAAACTACAACGAAAAACCACGCGAATAAAAAGGAATCGATTGAAATGC
ACGAAGCAAATGGTTATTTACATAGCAAAGACGAAGGAACGCGATTCTTA
CATCAACGCAAAACGCAGCCAGTTGCGGAACAGCAGCCGCCGGTTGTCGC
TCAGCCGCTGGAAATGGATGAAGAAGAAATTAATCGTAAACTCTGGAGAA
AGATTTGTAATAGCCTCGATCGCATGTGTTTTTATGGGTTTGGTTTTATT
TCTATTTTTGCTCCTGTTTTGGTTGTTGCTTTACTGGATCATCGTATGAT
GGGCGTGTAGATTTTGAGGCCCGGAATAATGAAGATAGGCTGATTGTGAT
AGAGGGTTGGATTTGAAATTGAAATCGAGGACATGATATTCAGATTCAAA
ATATAACATGATTTTGATTAAATGTTATGGTTGTAATACACTTTACTCCC
CGTGATTAAGATTGGATAATTACTTTCCCATAAAAACAGTACCGTCGATT
GTATTCGAATATCTAAAAACATGAACATTTTTCTGAAATGATTTTGCTTT
GGAACTGATGTTTCTATCTCATTTTAAATTGAGAAGCCGCTGGAGAAAAT
GAAATTATAAAATCCTGAACAAACGGTATTACGAAGTGAAATGTTCAAAG
TATCTCAAGAAAACATTTATAACATTCAGGAAAATGATTAGTCAACGATG
AATTACGTCTAAAATTAAATTATCAAAAAATTTTCTTCAATTTTAGCTTT
TTCTTCATATTTTATATATACTTTTTGCCCTTCTTTATTTGGTACAATAC
TTCTATATTATTATGTTACATGCTAGAAATTATTTAAGAAAAAGAAAATC
TATTTTACCATATTTATTTTGCATT

Coding sequence (CDS) from alignment at scaffold_21:36563..41937-

>TCONS_00052078 ID=TCONS_00052078|Name=TCONS_00052078|organism=Clytia hemisphaerica|type=CDS|length=9933bp|location=Sequence derived from alignment at scaffold_21:36563..41937- (Clytia hemisphaerica)
AGCAATTCAGCGTCAAAAGTGGTGAATGGGAGATTGAAGATATCGAAATG
TCATCTGGTACAGTCAAATACAGTTGTTGTCCAGACCCTTTCTCAGTCAT
CAAATATCGTTTCTCGTTGCGTCGAATGGCTTTGTACTATTTTCTATACA
TTATATTACCGTTGGTTTCGCAGGTATTTTTATTTTTAATGGTGTTTCAT
ATCCCATGTGAAAATGGGGAACGGATGGGATTTGGTGTCACTATTCTGTT
GAGTATTACCGTATACCTTTTGGTCATTTCCGAGAAATTACCGGAGAAAT
CCGATGACCGACCAATGTTGGGAATCTGCTTCATCATTGAATTCTACATT
TTGAGTTTTGCTTTGGTTGTTGCAGCGATTATTGTGAAATTATCGAATAG
AACTTCAACACCGCCTCACTTTTTGTTGCGTTTTTGCGGTACCAGTAAAT
CGATTTGTTGTGGAGCTGGCCATCAAACTACAACGAAAAACCACGCGAAT
AAAAAGGAATCGATTGAAATGCACGAAGCAAATGGTTATTTACATAGCAA
AGACGAAGGAACGCGATTCTTACATCAACGCAAAACGCAGCCAGTTGCGG
AACAGCAGCCGCCGGTTGTCGCTCAGCCGCTGGAAATGGATGAAGAAGAA
ATTAATCGTAAACTCTGGAGAAAGATTTGTAATAGCCTCGATCGCATGTG
TTTTTATGGGTTTGGTTTTATTTCTATTTTTGCTCCTGTTTTGGTTGTTG
CTTTACTGGATCATCGTATGATGGGCGTGTAGATTTGCACACTAACATTT
GGATCATGGTCATACATGAGCTCACAATTGAAATTATCTTTTTATGAGAA
TATCAGCCCTGGTGAAATCAACCATGCGCTACTGAAGAAAGCTTTGCACA
TACCGACCTGTACAAGACGAAAGCTCTTGTTTTTCATGACGGTTTGGTGT
TATGGACGGCTCCAGTCACGTGGCAAGTTTCATGCTCTTTTGATGTCACG
TGGTTTCCTATTGACAGGCAGAAATGGATAGACACACAATTATCATGGAA
CAAAACAGAATTTGAAAACATCGATAAAACGAACGTCGGTACAGACATGA
TTTGGACACCTGATGTCGTGCTTTATAATTCGACGTCAAACATCAATTAT
TCACTATCAACTCCTTCGTTCGTATGGTAGCAAAGATGTGATGGTGGAGC
GAGAAATTGTAGACACCATCTTAGATGGATATAATCTTGATATTCGACCT
GAGATCAAGCATGGTGAACCTTTACATGTTCATTTTGAAATGAAATTACA
AAAAATCGTAAGATTGAGGTGGAAAGATATTATGATGACGTACAAAAGCT
TGATGATATGTTTAGCTCTGTCCTTGATTGTAAACATCAATATCGTCACT
GCTGGTGGGAAGAGAAGGGAGCAATTCAGCGTCAAAAGTGGTGAATGGGA
GATTGAAGATATCGAAATGTCATCTGGTACAGTCAAATACAGTTGTTGTC
CAGACCCTTTCTCAGTCATCAAATATCGTTTCTCGTTGCGTCGAATGGCT
TTGTACTATTTTCTATACATTATATTACCGTTGGTTTCGCAGGTATTTTT
ATTTTTAATGGTGTTTCATATCCCATGTGAAAATGGGGAACGGATGGGAT
TTGGTGTCACTATTCTGTTGAGTATTACCGTATACCTTTTGGTCATTTCC
GAGAAATTACCGGAGAAATCCGATGACCGACCAATGTTGGGAATCTGCTT
CATCATTGAATTCTACATTTTGAGTTTTGCTTTGGTTGTTGCAGCGATTA
TTGTGAAATTATCGAATAGAACTTCAACACCGCCTCACTTTTTGTTGCGT
TTTTGCGGTACCAGTAAATCGATTTGTTGTGGAGCTGGCCATCAAACTAC
AACGAAAAACCACGCGAATAAAAAGGAATCGATTGAAATGCACGAAGCAA
ATGGTTATTTACATAGCAAAGACGAAGGAACGCGATTCTTACATCAACGC
AAAACGCAGCCAGTTGCGGAACAGCAGCCGCCGGTTGTCGCTCAGCCGCT
GGAAATGGATGAAGAAGAAATTAATCGTAAACTCTGGAGAAAGATTTGTA
ATAGCCTCGATCGCATGTGTTTTTATGGGTTTGGTTTTATTTCTATTTTT
GCTCCTGTTTTGGTTGTTGCTTTACTGGATCATCGTATGATGGGCGTGTA
GATTTGCACACTAACATTTGGATCATGGTCATACATGAGCTCACAATTGA
AATTATCTTTTTATGAGAATATCAGCCCTGGTGAAATCAACCATGCGCTA
CTGAAGAAAGCTTTGCACATACCGACCTGTACAAGACGAAAGCTCTTGTT
TTTCATGACGGTTTGGTGTTATGGACGGCTCCAGTCACGTGGCAAGTTTC
ATGCTCTTTTGATGTCACGTGGTTTCCTATTGACAGGCAGAAATGGATAG
ACACACAATTATCATGGAACAAAACAGAATTTGAAAACATCGATAAAACG
AACGTCGGTACAGACATGATTTGGACACCTGATGTCGTGCTTTATAATTC
GACGTCAAACATCAATTATTCACTATCAACTCCTTCGTTCGTATGGTAGC
AAAGATGTGATGGTGGAGCGAGAAATTGTAGACACCATCTTAGATGGATA
TAATCTTGATATTCGACCTGAGATCAAGCATGGTGAACCTTTACATGTTC
ATTTTGAAATGAAATTACAAAAAATCGTAAGATTGAGGTGGAAAGATATT
ATGATGACGTACAAAAGCTTGATGATATGTTTAGCTCTGTCCTTGATTGT
AAACATCAATATCGTCACTGCTGGTGGGAAGAGAAGGGAGCAATTCAGCG
TCAAAAGTGGTGAATGGGAGATTGAAGATATCGAAATGTCATCTGGTACA
GTCAAATACAGTTGTTGTCCAGACCCTTTCTCAGTCATCAAATATCGTTT
CTCGTTGCGTCGAATGGCTTTGTACTATTTTCTATACATTATATTACCGT
TGGTTTCGCAGGTATTTTTATTTTTAATGGTGTTTCATATCCCATGTGAA
AATGGGGAACGGATGGGATTTGGTGTCACTATTCTGTTGAGTATTACCGT
ATACCTTTTGGTCATTTCCGAGAAATTACCGGAGAAATCCGATGACCGAC
CAATGTTGGGAATCTGCTTCATCATTGAATTCTACATTTTGAGTTTTGCT
TTGGTTGTTGCAGCGATTATTGTGAAATTATCGAATAGAACTTCAACACC
GCCTCACTTTTTGTTGCGTTTTTGCGGTACCAGTAAATCGATTTGTTGTG
GAGCTGGCCATCAAACTACAACGAAAAACCACGCGAATAAAAAGGAATCG
ATTGAAATGCACGAAGCAAATGGTTATTTACATAGCAAAGACGAAGGAAC
GCGATTCTTACATCAACGCAAAACGCAGCCAGTTGCGGAACAGCAGCCGC
CGGTTGTCGCTCAGCCGCTGGAAATGGATGAAGAAGAAATTAATCGTAAA
CTCTGGAGAAAGATTTGTAATAGCCTCGATCGCATGTGTTTTTATGGGTT
TGGTTTTATTTCTATTTTTGCTCCTGTTTTGGTTGTTGCTTTACTGGATC
ATCGTATGATGGGCGTGTAGATTTGCACACTAACATTTGGATCATGGTCA
TACATGAGCTCACAATTGAAATTATCTTTTTATGAGAATATCAGCCCTGG
TGAAATCAACCATGCGCTACTGAAGAAAGCTTTGCACATACCGACCTGTA
CAAGACGAAAGCTCTTGTTTTTCATGACGGTTTGGTGTTATGGACGGCTC
CAGTCACGTGGCAAGTTTCATGCTCTTTTGATGTCACGTGGTTTCCTATT
GACAGGCAGAAATGGATAGACACACAATTATCATGGAACAAAACAGAATT
TGAAAACATCGATAAAACGAACGTCGGTACAGACATGATTTGGACACCTG
ATGTCGTGCTTTATAATTCGACGTCAAACATCAATTATTCACTATCAACT
CCTTCGTTCGTATGGTAGCAAAGATGTGATGGTGGAGCGAGAAATTGTAG
ACACCATCTTAGATGGATATAATCTTGATATTCGACCTGAGATCAAGCAT
GGTGAACCTTTACATGTTCATTTTGAAATGAAATTACAAAAAATCGTAAG
ATTGAGGTGGAAAGATATTATGATGACGTACAAAAGCTTGATGATATGTT
TAGCTCTGTCCTTGATTGTAAACATCAATATCGTCACTGCTGGTGGGAAG
AGAAGGGAGCAATTCAGCGTCAAAAGTGGTGAATGGGAGATTGAAGATAT
CGAAATGTCATCTGGTACAGTCAAATACAGTTGTTGTCCAGACCCTTTCT
CAGTCATCAAATATCGTTTCTCGTTGCGTCGAATGGCTTTGTACTATTTT
CTATACATTATATTACCGTTGGTTTCGCAGGTATTTTTATTTTTAATGGT
GTTTCATATCCCATGTGAAAATGGGGAACGGATGGGATTTGGTGTCACTA
TTCTGTTGAGTATTACCGTATACCTTTTGGTCATTTCCGAGAAATTACCG
GAGAAATCCGATGACCGACCAATGTTGGGAATCTGCTTCATCATTGAATT
CTACATTTTGAGTTTTGCTTTGGTTGTTGCAGCGATTATTGTGAAATTAT
CGAATAGAACTTCAACACCGCCTCACTTTTTGTTGCGTTTTTGCGGTACC
AGTAAATCGATTTGTTGTGGAGCTGGCCATCAAACTACAACGAAAAACCA
CGCGAATAAAAAGGAATCGATTGAAATGCACGAAGCAAATGGTTATTTAC
ATAGCAAAGACGAAGGAACGCGATTCTTACATCAACGCAAAACGCAGCCA
GTTGCGGAACAGCAGCCGCCGGTTGTCGCTCAGCCGCTGGAAATGGATGA
AGAAGAAATTAATCGTAAACTCTGGAGAAAGATTTGTAATAGCCTCGATC
GCATGTGTTTTTATGGGTTTGGTTTTATTTCTATTTTTGCTCCTGTTTTG
GTTGTTGCTTTACTGGATCATCGTATGATGGGCGTGTAGATTTGCACACT
AACATTTGGATCATGGTCATACATGAGCTCACAATTGAAATTATCTTTTT
ATGAGAATATCAGCCCTGGTGAAATCAACCATGCGCTACTGAAGAAAGCT
TTGCACATACCGACCTGTACAAGACGAAAGCTCTTGTTTTTCATGACGGT
TTGGTGTTATGGACGGCTCCAGTCACGTGGCAAGTTTCATGCTCTTTTGA
TGTCACGTGGTTTCCTATTGACAGGCAGAAATGGATAGACACACAATTAT
CATGGAACAAAACAGAATTTGAAAACATCGATAAAACGAACGTCGGTACA
GACATGATTTGGACACCTGATGTCGTGCTTTATAATTCGACGTCAAACAT
CAATTATTCACTATCAACTCCTTCGTTCGTATGGTAGCAAAGATGTGATG
GTGGAGCGAGAAATTGTAGACACCATCTTAGATGGATATAATCTTGATAT
TCGACCTGAGATCAAGCATGGTGAACCTTTACATGTTCATTTTGAAATGA
AATTACAAAAAATCGTAAGATTGAGGTGGAAAGATATTATGATGACGTAC
AAAAGCTTGATGATATGTTTAGCTCTGTCCTTGATTGTAAACATCAATAT
CGTCACTGCTGGTGGGAAGAGAAGGGAGCAATTCAGCGTCAAAAGTGGTG
AATGGGAGATTGAAGATATCGAAATGTCATCTGGTACAGTCAAATACAGT
TGTTGTCCAGACCCTTTCTCAGTCATCAAATATCGTTTCTCGTTGCGTCG
AATGGCTTTGTACTATTTTCTATACATTATATTACCGTTGGTTTCGCAGG
TATTTTTATTTTTAATGGTGTTTCATATCCCATGTGAAAATGGGGAACGG
ATGGGATTTGGTGTCACTATTCTGTTGAGTATTACCGTATACCTTTTGGT
CATTTCCGAGAAATTACCGGAGAAATCCGATGACCGACCAATGTTGGGAA
TCTGCTTCATCATTGAATTCTACATTTTGAGTTTTGCTTTGGTTGTTGCA
GCGATTATTGTGAAATTATCGAATAGAACTTCAACACCGCCTCACTTTTT
GTTGCGTTTTTGCGGTACCAGTAAATCGATTTGTTGTGGAGCTGGCCATC
AAACTACAACGAAAAACCACGCGAATAAAAAGGAATCGATTGAAATGCAC
GAAGCAAATGGTTATTTACATAGCAAAGACGAAGGAACGCGATTCTTACA
TCAACGCAAAACGCAGCCAGTTGCGGAACAGCAGCCGCCGGTTGTCGCTC
AGCCGCTGGAAATGGATGAAGAAGAAATTAATCGTAAACTCTGGAGAAAG
ATTTGTAATAGCCTCGATCGCATGTGTTTTTATGGGTTTGGTTTTATTTC
TATTTTTGCTCCTGTTTTGGTTGTTGCTTTACTGGATCATCGTATGATGG
GCGTGTAGATTTGCACACTAACATTTGGATCATGGTCATACATGAGCTCA
CAATTGAAATTATCTTTTTATGAGAATATCAGCCCTGGTGAAATCAACCA
TGCGCTACTGAAGAAAGCTTTGCACATACCGACCTGTACAAGACGAAAGC
TCTTGTTTTTCATGACGGTTTGGTGTTATGGACGGCTCCAGTCACGTGGC
AAGTTTCATGCTCTTTTGATGTCACGTGGTTTCCTATTGACAGGCAGAAA
TGGATAGACACACAATTATCATGGAACAAAACAGAATTTGAAAACATCGA
TAAAACGAACGTCGGTACAGACATGATTTGGACACCTGATGTCGTGCTTT
ATAATTCGACGTCAAACATCAATTATTCACTATCAACTCCTTCGTTCGTA
TGGTAGCAAAGATGTGATGGTGGAGCGAGAAATTGTAGACACCATCTTAG
ATGGATATAATCTTGATATTCGACCTGAGATCAAGCATGGTGAACCTTTA
CATGTTCATTTTGAAATGAAATTACAAAAAATCGTAAGATTGAGGTGGAA
AGATATTATGATGACGTACAAAAGCTTGATGATATGTTTAGCTCTGTCCT
TGATTGTAAACATCAATATCGTCACTGCTGGTGGGAAGAGAAGGGAGCAA
TTCAGCGTCAAAAGTGGTGAATGGGAGATTGAAGATATCGAAATGTCATC
TGGTACAGTCAAATACAGTTGTTGTCCAGACCCTTTCTCAGTCATCAAAT
ATCGTTTCTCGTTGCGTCGAATGGCTTTGTACTATTTTCTATACATTATA
TTACCGTTGGTTTCGCAGGTATTTTTATTTTTAATGGTGTTTCATATCCC
ATGTGAAAATGGGGAACGGATGGGATTTGGTGTCACTATTCTGTTGAGTA
TTACCGTATACCTTTTGGTCATTTCCGAGAAATTACCGGAGAAATCCGAT
GACCGACCAATGTTGGGAATCTGCTTCATCATTGAATTCTACATTTTGAG
TTTTGCTTTGGTTGTTGCAGCGATTATTGTGAAATTATCGAATAGAACTT
CAACACCGCCTCACTTTTTGTTGCGTTTTTGCGGTACCAGTAAATCGATT
TGTTGTGGAGCTGGCCATCAAACTACAACGAAAAACCACGCGAATAAAAA
GGAATCGATTGAAATGCACGAAGCAAATGGTTATTTACATAGCAAAGACG
AAGGAACGCGATTCTTACATCAACGCAAAACGCAGCCAGTTGCGGAACAG
CAGCCGCCGGTTGTCGCTCAGCCGCTGGAAATGGATGAAGAAGAAATTAA
TCGTAAACTCTGGAGAAAGATTTGTAATAGCCTCGATCGCATGTGTTTTT
ATGGGTTTGGTTTTATTTCTATTTTTGCTCCTGTTTTGGTTGTTGCTTTA
CTGGATCATCGTATGATGGGCGTGTAGATTTGCACACTAACATTTGGATC
ATGGTCATACATGAGCTCACAATTGAAATTATCTTTTTATGAGAATATCA
GCCCTGGTGAAATCAACCATGCGCTACTGAAGAAAGCTTTGCACATACCG
ACCTGTACAAGACGAAAGCTCTTGTTTTTCATGACGGTTTGGTGTTATGG
ACGGCTCCAGTCACGTGGCAAGTTTCATGCTCTTTTGATGTCACGTGGTT
TCCTATTGACAGGCAGAAATGGATAGACACACAATTATCATGGAACAAAA
CAGAATTTGAAAACATCGATAAAACGAACGTCGGTACAGACATGATTTGG
ACACCTGATGTCGTGCTTTATAATTCGACGTCAAACATCAATTATTCACT
ATCAACTCCTTCGTTCGTATGGTAGCAAAGATGTGATGGTGGAGCGAGAA
ATTGTAGACACCATCTTAGATGGATATAATCTTGATATTCGACCTGAGAT
CAAGCATGGTGAACCTTTACATGTTCATTTTGAAATGAAATTACAAAAAA
TCGTAAGATTGAGGTGGAAAGATATTATGATGACGTACAAAAGCTTGATG
ATATGTTTAGCTCTGTCCTTGATTGTAAACATCAATATCGTCACTGCTGG
TGGGAAGAGAAGGGAGCAATTCAGCGTCAAAAGTGGTGAATGGGAGATTG
AAGATATCGAAATGTCATCTGGTACAGTCAAATACAGTTGTTGTCCAGAC
CCTTTCTCAGTCATCAAATATCGTTTCTCGTTGCGTCGAATGGCTTTGTA
CTATTTTCTATACATTATATTACCGTTGGTTTCGCAGGTATTTTTATTTT
TAATGGTGTTTCATATCCCATGTGAAAATGGGGAACGGATGGGATTTGGT
GTCACTATTCTGTTGAGTATTACCGTATACCTTTTGGTCATTTCCGAGAA
ATTACCGGAGAAATCCGATGACCGACCAATGTTGGGAATCTGCTTCATCA
TTGAATTCTACATTTTGAGTTTTGCTTTGGTTGTTGCAGCGATTATTGTG
AAATTATCGAATAGAACTTCAACACCGCCTCACTTTTTGTTGCGTTTTTG
CGGTACCAGTAAATCGATTTGTTGTGGAGCTGGCCATCAAACTACAACGA
AAAACCACGCGAATAAAAAGGAATCGATTGAAATGCACGAAGCAAATGGT
TATTTACATAGCAAAGACGAAGGAACGCGATTCTTACATCAACGCAAAAC
GCAGCCAGTTGCGGAACAGCAGCCGCCGGTTGTCGCTCAGCCGCTGGAAA
TGGATGAAGAAGAAATTAATCGTAAACTCTGGAGAAAGATTTGTAATAGC
CTCGATCGCATGTGTTTTTATGGGTTTGGTTTTATTTCTATTTTTGCTCC
TGTTTTGGTTGTTGCTTTACTGGATCATCGTATGATGGGCGTGTAGATTT
GCACACTAACATTTGGATCATGGTCATACATGAGCTCACAATTGAAATTA
TCTTTTTATGAGAATATCAGCCCTGGTGAAATCAACCATGCGCTACTGAA
GAAAGCTTTGCACATACCGACCTGTACAAGACGAAAGCTCTTGTTTTTCA
TGACGGTTTGGTGTTATGGACGGCTCCAGTCACGTGGCAAGTTTCATGCT
CTTTTGATGTCACGTGGTTTCCTATTGACAGGCAGAAATGGATAGACACA
CAATTATCATGGAACAAAACAGAATTTGAAAACATCGATAAAACGAACGT
CGGTACAGACATGATTTGGACACCTGATGTCGTGCTTTATAATTCGACGT
CAAACATCAATTATTCACTATCAACTCCTTCGTTCGTATGGTAGCAAAGA
TGTGATGGTGGAGCGAGAAATTGTAGACACCATCTTAGATGGATATAATC
TTGATATTCGACCTGAGATCAAGCATGGTGAACCTTTACATGTTCATTTT
GAAATGAAATTACAAAAAATCGTAAGATTGAGGTGGAAAGATATTATGAT
GACGTACAAAAGCTTGATGATATGTTTAGCTCTGTCCTTGATTGTAAACA
TCAATATCGTCACTGCTGGTGGGAAGAGAAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032984XLOC_032984Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052078-proteinTCONS_00052078-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052078-exon-scaffold_21-1575043694:41834..41937TCONS_00052078-exon-scaffold_21-1575043694:41834..41937Clytia hemisphaericaexon
TCONS_00052078-exon-scaffold_21-1575043694:41180..41319TCONS_00052078-exon-scaffold_21-1575043694:41180..41319Clytia hemisphaericaexon
TCONS_00052078-exon-scaffold_21-1575043694:40111..40155TCONS_00052078-exon-scaffold_21-1575043694:40111..40155Clytia hemisphaericaexon
TCONS_00052078-exon-scaffold_21-1575043694:39459..39568TCONS_00052078-exon-scaffold_21-1575043694:39459..39568Clytia hemisphaericaexon
TCONS_00052078-exon-scaffold_21-1575043694:38995..39139TCONS_00052078-exon-scaffold_21-1575043694:38995..39139Clytia hemisphaericaexon
TCONS_00052078-exon-scaffold_21-1575043694:38221..38314TCONS_00052078-exon-scaffold_21-1575043694:38221..38314Clytia hemisphaericaexon
TCONS_00052078-exon-scaffold_21-1575043694:36563..37909TCONS_00052078-exon-scaffold_21-1575043694:36563..37909Clytia hemisphaericaexon
TCONS_00052078-exon-scaffold_21-1510915933:41834..41937TCONS_00052078-exon-scaffold_21-1510915933:41834..41937Clytia hemisphaericaexon
TCONS_00052078-exon-scaffold_21-1510915933:41180..41319TCONS_00052078-exon-scaffold_21-1510915933:41180..41319Clytia hemisphaericaexon
TCONS_00052078-exon-scaffold_21-1510915933:40111..40155TCONS_00052078-exon-scaffold_21-1510915933:40111..40155Clytia hemisphaericaexon
TCONS_00052078-exon-scaffold_21-1510915933:39459..39568TCONS_00052078-exon-scaffold_21-1510915933:39459..39568Clytia hemisphaericaexon
TCONS_00052078-exon-scaffold_21-1510915933:38995..39139TCONS_00052078-exon-scaffold_21-1510915933:38995..39139Clytia hemisphaericaexon
TCONS_00052078-exon-scaffold_21-1510915933:38221..38314TCONS_00052078-exon-scaffold_21-1510915933:38221..38314Clytia hemisphaericaexon
TCONS_00052078-exon-scaffold_21-1510915933:36563..37909TCONS_00052078-exon-scaffold_21-1510915933:36563..37909Clytia hemisphaericaexon
TCONS_00052078-exon-scaffold_21-1491911889:41834..41937TCONS_00052078-exon-scaffold_21-1491911889:41834..41937Clytia hemisphaericaexon
TCONS_00052078-exon-scaffold_21-1491911889:41180..41319TCONS_00052078-exon-scaffold_21-1491911889:41180..41319Clytia hemisphaericaexon
TCONS_00052078-exon-scaffold_21-1491911889:40111..40155TCONS_00052078-exon-scaffold_21-1491911889:40111..40155Clytia hemisphaericaexon
TCONS_00052078-exon-scaffold_21-1491911889:39459..39568TCONS_00052078-exon-scaffold_21-1491911889:39459..39568Clytia hemisphaericaexon
TCONS_00052078-exon-scaffold_21-1491911889:38995..39139TCONS_00052078-exon-scaffold_21-1491911889:38995..39139Clytia hemisphaericaexon
TCONS_00052078-exon-scaffold_21-1491911889:38221..38314TCONS_00052078-exon-scaffold_21-1491911889:38221..38314Clytia hemisphaericaexon
TCONS_00052078-exon-scaffold_21-1491911889:36563..37909TCONS_00052078-exon-scaffold_21-1491911889:36563..37909Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:36563..41937 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.197631	0.349656	0.14232	0.0442565	0.784708	0.468327	0.38195	0.408743	0.639675	0.631789	0.676084	0.752771	12.1898	14.6001	0.470182	0.984345	1.03388	1.35782	24.4289	16.7864	2.97626	2.84566	0.407079	0.794366	1.19354	1.62336	0.346456	0.321526	0.316762	0.305217
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006201Neur_channel
IPR006029Neurotrans-gated_channel_TM
IPR006202Neur_chan_lig-bd
IPR018000Neurotransmitter_ion_chnl_CS
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
GO:0005230extracellular ligand-gated ion channel activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005230 extracellular ligand-gated ion channel activity
molecular_function GO:0005216 ion channel activity
Blast
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BLAST of TCONS_00052078 vs. Swiss-Prot (Human)
Match: ACHA6 (Neuronal acetylcholine receptor subunit alpha-6 OS=Homo sapiens GN=CHRNA6 PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.139e-56
Identity = 103/316 (32.59%), Postives = 181/316 (57.28%), Query Frame = 2 
Query:  101 RGSKDVMVEREIVDTILDGYNLDIRPEIKHGEPLHVHFEMKLQKIVRLDVKHQLFTINSFVRMKWIDTQLSWNKTEFENIDKTNVGTDMIWTPDVVLYNSATEESFAHTDLYKTKALVFHDGLVLWTAPVTWQVSCSFDVTWFPIDRQICTLTFGSWSYMSSQLKLSFYENISPGEINHEQFSVKSGEWEIEDIEMSSGTVKYSCCPDPFSVIKYRFSLRRMALYYFLYIILPLVSQVFLFLMVFHIPCENGERMGFGVTILLSITVYLLVISEKLPEKSDDRPMLGICFIIEFYILSFALVVAAIIVKLSNRTST 1048
            +G      E  +   +   YN  IRP     +P+ VHFE+ + ++  +D  +Q+   N ++R  W D +L W+  E++ I+   V  D IW PD+VLYN+A  +        KTKAL+ ++G++ WT P  ++ SC  D+T+FP D Q C+L FGSW+Y  +++ L     I   +++   F  ++ EWEI D       +KY+CC + ++ I Y F +RR+ ++Y + +I+P +   FL ++VF++P + GE++   +++LLS+TV+LLVI+E +P  S   P++G   +     ++ ++VV   ++ +  RT T
Sbjct:   26 KGCVGCATEERLFHKLFSHYNQFIRPVENVSDPVTVHFEVAITQLANVDEVNQIMETNLWLRHIWNDYKLRWDPMEYDGIETLRVPADKIWKPDIVLYNNAVGDFQVEG---KTKALLKYNGMITWTPPAIFKSSCPMDITFFPFDHQNCSLKFGSWTYDKAEIDLL----IIGSKVDMNDFW-ENSEWEIIDASGYKHDIKYNCCEEIYTDITYSFYIRRLPMFYTINLIIPCLFISFLTVLVFYLPSDCGEKVTLCISVLLSLTVFLLVITETIPSTSLVVPLVGEYLLFTMIFVTLSIVVTVFVLNIHYRTPT 333
The following BLAST results are available for this feature:
BLAST of TCONS_00052078 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACHA61.139e-5632.59Neuronal acetylcholine receptor subunit alpha-6 OS... [more]
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