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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052116 ID=TCONS_00052116|Name=TCONS_00052116|organism=Clytia hemisphaerica|type=transcript|length=1221bp
GGCGAAGAAAAACAGCAAAACATAACAAGTCTTGATACAAATGATGCTTC
AAAACCTGTTCTTGCAACATCACCAGTCGAGTGTGTTTTGAAATGCAAGA
GAAAAGGAATGGACAATTTCTATGTTAAGGATAAAAATGAATGTTTCTGT
TTGAAGAGTGAAAACCAGGCGATTAATTCAGATGGAGAATCAATGCAAGG
AATCGTTTATAAACAAcaTTGTAACGAAGAAACATACGGTGATTCAAACC
CATTGGTCATTAAAGGTAAGAAGAAACTAAAGATTCGCAAAGCTACCTCC
ACAACACCAATTCTTCAGTGGACTGATTTGCATATTTATCGGTTGGATGT
CAAAGCTGGGGAGCATCGGCTAGGCGATATATTCATATTTACGGAATTGG
ATAACACAATGTCTGGCAATTATGTCATTAGCCCAGTTAACCCCAGCGAT
ACCGATATATTCAAAGTACCAATCTCTTACGAAAGTTTCTGGATGTTTGG
TAATAGTNCGATATATTCAAAGTACCAATCTCTTACGAAAGTTTCTGGAT
GTTTGGTAATCAAGCATTTTGGAGGCCAACTTGCCCCGCTGGGTATGCTC
GATTTGGAATCTTAGCCACGGTACAGGGAAAAAGGCCTGTTGACGGTGAC
ATCTATTGTGTCAAAGAGGAGTATACTTTGAAAGGTTCAATTGAATGGGA
ACTTCTTTGGAAATGGGACCGTGATGCTTCGAACAGAGCAAAGATTTTTA
AAGGAAAGTCTGGACAGCCCGAAAAAACAGTGGATTTGATCACAGTTTTG
GCAGCCCTGAAGAATACCTATCAAAGTCCATCGCAAAATTACCACTTTTT
GTCGAAAGAATCTATTGTTGAggaaaattaaaacataaatAATATTAACC
CATCGGGCAGATCACACAGCACGTAAATTTGAGGCCAACTTCTATAAATT
GACAAAGCATCCCAATGCATATTCTGcgagattttttaaaaagatacacT
TTGTGATACGAATATATAAACAGACATGTTTAATTTGAAATTCGTTAAAA
ACAAAGCCATCGTACGGGGAAACTGTAACTGGTTTTAAATGAGGATTTCG
AGTAGGGCGTCGGGCGGGAGTGACTTTTAATTAACACAGAAGTGTAAAAC
ATTGCGAATTGATTGACTGTTAAACTAACAGACAATGGTATCCTGACAAT
AATTATatataaattttcaaa Run BLAST on NCBI transcript from alignment at scaffold_210:167986..170077+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052116 ID=TCONS_00052116|Name=TCONS_00052116|organism=Clytia hemisphaerica|type=transcript|length=2092bp|location=Sequence derived from alignment at scaffold_210:167986..170077+ (Clytia hemisphaerica)
GGCGAAGAAAAACAGCAAAACATAACAAGTCTTGATACAAATGATGCTTC
AAAACCTGTTCTTGCAACATCACCAGTCGAGTGTGTTTTGAAATGCAAGA
GAAAAGGAATGGACAATTTCTATGTTAAGGATAAAAATGAATGTTTCTGT
TTGAAGAGTGAAAACCAGGCGATTAATTCAGATGGAGAATCAATGCAAGG
AATCGTTTATAAACAAGTAAGTACATGCTTCTTTTtgtataagaatagtg
tactttggatgaggatCAATTATTCTTAATGTATCTTTAATTTCTTAGAC
TGTTTTAtacaaacatgaaaaaatgaTCATTTTAAGAGTTTGAGACTTTT
GAGTGCACATTGGGAGCTAAAATTAAAATTCTgcttcaaacttttttctg
tTAACCGAATAGAAAGTGACCTTATCCTCATCACAATCTGTGAAActtag
agggtattcttagggtattcttagggtattcttagggtattcttagggta
ttcttacgatttggccaattttcaccctatcagaaaaaaaataatgagcc
aacCTCGAGAAAAAATGGTAACAGatgaacggacgaacaaacaaaAGGTT
AAAATAAAGAACATCCGTGGTAGGTCTAAAAACAGCGGGTAAGCCAAGGT
AGAAATTATAATTAGTTAATGTAGATGGGTccttaatttcaaaacaaagg
ctgaatgaAGTCTAAACCAGATTTTATCAACctaaagtcatcttttaaaa
gaatactCTGAAACAAAAGTGGTGTTTAAAAAGTCTTTCGGAGAAGAGAC
AACTTCTTTTTCCTCGAAAAcgtatatttgaaaaatatttgatttttttc
agcaTTGTAACGAAGAAACATACGGTGATTCAAACCCATTGGTCATTAAA
GGTCAGTATTTTAAACCGTTTTCCGAAGATATATAAATTCACATGCATGG
TTGATAACAAAATTAGCACAAGATGATCCAAGCATCTTATTTAGGCCCGG
CGAGCAGCAAATAATTTAACCCGGGAGCTCCTTAAAACTCACCGGAACAG
GCAAAAACCAGCTTTGCCCTACCCAAAAACTCGAAGAGTTAAAAATGCTT
GATATTCAGCCAATCGGATTTTGCTTGCTTTTTTAGGTAAGAAGAAACTA
AAGATTCGCAAAGCTACCTCCACAACACCAATTCTTCAGTGGACTGATTT
GCATATTTATCGGTTGGATGTCAAAGCTGGGGAGCATCGGCTAGGCGATA
TATTCATATTTACGGAATTGGATAACACAATGTCTGGCAATTATGTCATT
AGCCCAGTTAACCCCAGCGATACCGATATATTCAAAGTACCAATCTCTTA
CGAAAGTTTCTGGATGTTTGGTAATAGTNCGATATATTCAAAGTACCAAT
CTCTTACGAAAGTTTCTGGATGTTTGGTAATCAAGCATTTTGGAGGCCAA
CTTGCCCCGCTGGGTATGCTCGATTTGGAATCTTAGCCACGGTACAGGGA
AAAAGGCCTGTTGACGGTGACATCTATTGTGTCAAAGAGGAGTATACTTT
GAAAGGTTCAATTGAATGGGAACTTCTTTGGAAATGGGACCGTGATGCTT
CGAACAGAGCAAAGATTTTTAAAGGAAAGTCTGGACAGCCCGAAAAAACA
GTGGATTTGATCACAGTTTTGGCAGCCCTGAAGAATACCTATCAAAGTCC
ATCGCAAAATTACCACTTTTTGTCGAAAGAATCTATTGTTGAggaaaatt
aaaacataaatAATATTAACCCATCGGGCAGATCACACAGCACGTAAATT
TGAGGCCAACTTCTATAAATTGACAAAGCATCCCAATGCATATTCTGcga
gattttttaaaaagatacacTTTGTGATACGAATATATAAACAGACATGT
TTAATTTGAAATTCGTTAAAAACAAAGCCATCGTACGGGGAAACTGTAAC
TGGTTTTAAATGAGGATTTCGAGTAGGGCGTCGGGCGGGAGTGACTTTTA
ATTAACACAGAAGTGTAAAACATTGCGAATTGATTGACTGTTAAACTAAC
AGACAATGGTATCCTGACAATAATTATatataaattttcaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052116-exon-scaffold_210-1491911889:167986..168201 | TCONS_00052116-exon-scaffold_210-1491911889:167986..168201 | Clytia hemisphaerica | exon |
| TCONS_00052116-exon-scaffold_210-1510915933:167986..168201 | TCONS_00052116-exon-scaffold_210-1510915933:167986..168201 | Clytia hemisphaerica | exon |
| TCONS_00052116-exon-scaffold_210-1575043694:167986..168201 | TCONS_00052116-exon-scaffold_210-1575043694:167986..168201 | Clytia hemisphaerica | exon |
| TCONS_00052116-exon-scaffold_210-1491911889:168838..168886 | TCONS_00052116-exon-scaffold_210-1491911889:168838..168886 | Clytia hemisphaerica | exon |
| TCONS_00052116-exon-scaffold_210-1510915933:168838..168886 | TCONS_00052116-exon-scaffold_210-1510915933:168838..168886 | Clytia hemisphaerica | exon |
| TCONS_00052116-exon-scaffold_210-1575043694:168838..168886 | TCONS_00052116-exon-scaffold_210-1575043694:168838..168886 | Clytia hemisphaerica | exon |
| TCONS_00052116-exon-scaffold_210-1491911889:169122..170077 | TCONS_00052116-exon-scaffold_210-1491911889:169122..170077 | Clytia hemisphaerica | exon |
| TCONS_00052116-exon-scaffold_210-1510915933:169122..170077 | TCONS_00052116-exon-scaffold_210-1510915933:169122..170077 | Clytia hemisphaerica | exon |
| TCONS_00052116-exon-scaffold_210-1575043694:169122..170077 | TCONS_00052116-exon-scaffold_210-1575043694:169122..170077 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_210 | supercontig | scaffold_210:167986..170077 + |
Blast
The following BLAST results are available for this feature:
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