TCONS_00052190 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052190
Unique NameTCONS_00052190
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1558

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052190 ID=TCONS_00052190|Name=TCONS_00052190|organism=Clytia hemisphaerica|type=transcript|length=1558bp
TCGAAATAATGTACTCATAATTCTTAGATTATTGTAAGTGCACAATATGA
AAGAAAGGAATAAAGGATGTCTTGCCAAAATCCATTCGACACCTCCATCA
TTCTGATACCTCAAGACGAAGATGGAATTTGTTTTTGTGGATATATCATT
ATTGCAAACAAAGATGAGTTTAGAGTAAACATACACCTCAAAGAAAAAGG
TTCTCTGAAAGATGCAAGGTTGGATTGTAGCTGGGATGTTTCGCAAACAC
TTAAAGGGTACGAAGAAGCTATTCAGAAGAAGCTCAATCAAAGCTCATCA
ATCCACGAATTTTTGACAGAACTGAAAGCTCTTGTGGAAAATATCACCTC
TTTCTCATCTTTGAATGACCGCCCAGATGACATTGGCTCACATCAACTTA
CGGAGATTTTCCAAGAAATTGAACAGATAGGCTGGGACAAgtTGGTTTTC
ACTGACAATAATTTCGGGACTTTGAAATTTGTGCACTGTGACAAAGAATC
GAGAGAGCATATTTTGGTTCTTGAAAGACAGGGTGCTTTTTCCGATTTTG
TTGCATCGACAAATCTTCCTGTAAACCTACAACAGAAGaaaaatGAGAAG
ATTCTTGTTAAATACAATAAATTCGTTAAGATAGTAGACAAATGTCAATT
ATTTTGGAATGTTCTAAAGGATTTGGACGAAGAATGTTGGATATTGGAGC
CTGAAGTTCCATCATATGATTGTCAATATCGAAGAATTGCACTCGGTAAG
AATGCTTCATTGAGAATCGATGTCAACCCACTGCAACCGTCCACCTTCCC
AGAATGCCGTTTCCTTGGTCCTTCTACTGttaTCGATCCattaaagcaaa
atttgaataaacaCATGCACCTATGGGACGATCAGAAAGGTTTGTTGGAC
AATTTACGAACAGTACTTGACATCGAATTCCCATCGAAGACAACCGTGGA
AATCAATGAATTACGTGTTGAATGTGGTATTTGTTATGCATATCAACTGG
AGGACGAGATTCCTGATAAAAGTTGTGAAGATACAAGATGTGCTCAAACT
TTTCACTCATCATGCTTACTTGAGtGGATGCGATGTCTTCCCTCATTCCG
TCAAAGTTTTAATGTAGTTTTTGGTCAATGTCCATACTGTGAAAAGAAAT
TGACCATCAAATTGAAGAAATGAATATCGATTGGGTGAAAAGGAGCGAAA
ATAAAGATTGTAGCTCGGAATATTACGGGCAAACAAAATTGTACAATAAT
TAATAATGGGTATATTTGTGGAACTTATTTTCTATTGCGATGGAACTATG
GTATGGAGTTGTTCAAGATGAATATGCTAGCTATGTAGAGGAAAAAAACT
TATNcacaggaaaaaattattgattcccTAGCCTAGGGATTGTTCATTTT
CAGATGTGTTTTTTTATTCGATCACATTAGTctagaatttaaagttcggg
aaAGTAAGGAACTTAGGGAAACCTATTTTCCTATGCTGGAAGTGTATTAC
CAATGTGTTAGTGAAAACGGATTTCCACATGTggaaaactaatattttta
acattCTA
Run BLAST on NCBI

transcript from alignment at scaffold_212:45667..61109-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052190 ID=TCONS_00052190|Name=TCONS_00052190|organism=Clytia hemisphaerica|type=transcript|length=15443bp|location=Sequence derived from alignment at scaffold_212:45667..61109- (Clytia hemisphaerica)
TCGAAATAATGTACTCATAATTCTTAGATTATTGTAAGTGCACAATATGA AAGAAAGGAATAAAGGATGTCTTGCCAAAATCCATTCGACACCTCCATCA TTCTGATACCTCAAGACGAAGATGGAATTTGTTTTTGTGGATATATCATT ATTGCAGTAAGTATATTGAGCAAAATCATTTTTTTGTCCAAAAACCTTTA GAACTTTGAAAACCTTCTAAAATGATGAATACAGGATTATCTTTTTTATT GAAATATATCTATTTTTTCAATACTTTAAGTTTCTTATTTTTAAAACACA TGGGCACCGGCGAGCCATTTTGAGTGAGGGGGCCAAATATTTGGAAAAAA ATGTCGCCCACCATGGTTGGGCGACAAATAAAATTTGTCACTTTTTACAC CCTCAAAACACCTTAAAACGATATATATTTGGGGAGAATAATAGTTTTTG TGCTTTCATTTGGTCTCAAACCAAATTAAAATGGTAACTCTTAAAAACGT ATGACATGGTCTTCCAAAAAGGGGGGGGGCCATGGGGCCCCATTGTAGTA AGTGCTCTGAGTTGACTTTTCAACGATATATACAGGAGTGTTTAGAAAAT TGAACATTTCTTTCATTATTCTCTTTAGAACAAAGATGAGTTTAGAGTAA ACATACACCTCAAAGAAAAAGGTTCTCTGAAAGATGCAAGGTCAGATTCT TATTTGGAGTATGATGATTATATCTATCTATAGCGCCAACAATAGCTCCT ATTGAAATTTAAGGTGGTCTGGCTTATTTAGTAAAAACTTGTCTTCATAT TTTGAGTACATTGTAATTTTAATCATTCATTTAGGTTGGATTGTAGCTGG GATGTTTCGCAAACACTTAAAGGGTACGAAGAAGCTATTCAGAAGGTAAT NTTGTAGCTGGGATGTTTTGCAAACACTTAAAGGGTACGAAGAAGCTATT CAGAAGGTAATTTGTTAGCATTACCTACAGAGGCCGAGAAGGGTCTCCAT GTGAGTTCTTTTAAAAATTGTCGAGATCTTTAAGCTGATGAGTCAAGATT TCTTTCAAACTGTTCCACCTCCAGAATGTGTCGCAAAAACATGGTTTCAG CCCACTTTTCAGGTGCCCCTGAAAAGCATGGTGCTCCCAACGAGTTAGGT CCCCTTGAAAAATTGCTTTGAGTTAGGTACCCCTATTCAGCAGATAATTT CTTTGAATTGACACTTTTTGTTCTTTTGTCATTCCTAANNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNAATATAGCAAAAGATGGCGTGATGGGAAACAAA AGAAAAATTGGATGGGAAACTAGGTGCTAGGATAAAAAAATTCAATAATT TGAAATATTTTGAAATATTCGATTTGGAAAATATTACCAGCCTCCAGAGC CTCCATCAAGACAGCTAGGTACCCTTAATGAATAGGTAACCCCAAAGAAT TGCAAGGCATTAGCCCCCCTCTACTAACTTGGCCTAGGTGCCCTTCAGAT TTCTGGGGGGGGGCTGATACCATGAAAAACATTTGCTTTCCCAAAAGCTG TCATATTTCCTAGAACTGCTGCGTTTCCAAAATCTAAACTAAACTACCAC TTTTTCTTGATGTGATCAGAAGACCTAAATTAATTATTCTTTTTAACAAT GGTAAAAAAAACTCAAAAACTGAATTTTGTGGGAATAGACGATATCGGCT TAACATGAAAAGTCAGATTTGACCTCCGAGAATCCCTCACAATGCGTTGC GTGGAAAAAAGTTTGCTGTGAAATATTTTCCACGCAAATCATTGTGGGGA ATTCTCGGGGGTCAAATCTGATTTTTCATGTTAAGCCAATATCGTCTATG AATTTTTTCATTGTTAAAAAATTAGATCCCTAGGAAAGGTAGATGCATGT ATATTTCATTTTACTAATGATTTTAACACTCATGATATATATACAATATC TTCAAGGACCCATTAGCTAAATTGGTTGTAATTGACGTAAAATCAGTCAA TAGACATTTTAATGGTGTATTTCATGAATTTAAAAGGATGAATGAGCCAG TGACGTTTAACAAAATCTTTTCTGATCTCACTTTAAACAATACTATAAAC AATACAAAATTTGGCCCAAATGGCGAAAATTTACCGTAAGGCTGGACTTA AAAAATTTTTGGTTTGCCGTCACCCGACCGACCCTACCTCGAAACCTGCC GACCCAAAAAATTTATTGCCATTTTAAATAAGATTTTTTTTCCTTCAAAA ACTTCAAACAATAAAAAATCAAAACTCGCATCTTGTTTGTCTCAAGCATA ATTTCCCTGCTAGCACTTCTGTTTTTTATTCAAAATTTCCTAAATGTAAA CAAACTGTTAACCCTTCCATGGACGAAAATTTCATAAATCGCCAAAATAA AAAAAAATTCCGACCGACCGACCCACCTCCAAAATCTAGGGTCGGGTGAT GGCAAACCAACAATTTTTTAAGCCCAGCCTAATTCGGTCTAATGTCGACA TCCCTCATCTAACTCTGACACCCTTTTTATCAGTTGAAATTGATAGAAAG GTCAAAACTATTTTTCTTTGCTTAGTGGTCAGAGAGGAATAATCCTCTTT CAATCAGTGATTCAAACTTTCATATTATTCCTGTCTCTAAAGAAGGGTGT CGGAATAACACGAGGGATGTCGATATTAGACCAACTTACGGTAATACCAC AAAATGTAACTTTTTCTCTTTTTTTCCGACTGCAAACATTAGTTCTCTCC GGGTTCCTTCCAATCAGAAAAAACTTATAATTGAATTTTTGTCTGGATAA AAGATTTCGAGGATGTTACCAAATTTTTCGTTCAATTTGTTGTTGTTTAA AATGATGCGACAGATTGAATATTAAAGCAGCTTGAACACGACAAAACATG CAATGCAGGGTAAATGCTAATTTTTTTGGTGGCCAGGTTTCAAGGTAGGG TCAATCGGATAACAGCAAGCCAACACTTAAATCTAGTCTATCTCTTATTC AAGCTAGAAAATTATACCCTCTGTTAGTCAAGTATTTCTACAATTGAAAT AAATTTCATTGTCCCATATATAGATCGAATAGCTAAAAAATAATTTTTTT ATTGAAGTTCCCAATTCTTATATCATCATAGAAGCTCAATCAAAGCTCAT CAATCCACGAATTTTTGACAGAACTGAAAGCTCTTGTGGTAAGTTATTAT TTTTTTAATAAAAAAGGAAAAAACAAAACTTTTAATTTGCCTTTCTACTT TTGCCTCTTGTATTCGCTTTCTCAACCTTTCAGATGTCTGATTTTAAAAT ACCAAGGAAAACTTTAAACATGATGGGTTTCAAATTAAAAAAAAAACACT TTAAAACAGCTTATCATAACTGTCCCTATCGATGCGATACATAGGCTGTG CACATCCCAAGAATTGATTTTGATATAGGGATGCGTATCATGTATAAAAA CACACGACACATGTTTTGATTGCAATGCAAAACTTTCCATGAGTTATTTT CTTTACAGGAAAATATCACCTCTTTCTCATCTTTGAATGACCGCCCAGAT GACATTGGCTCACATCAACTTACGGAGATTTTCCAAGAAATTGAACAGAT AGGCTGGGACAAGTAGATCAAATTTTTATGAAATATGAATTTAGAATTTA GGCTATTTTGCTATACTAAACACTTAACTTTAAGGTGTTCCTAACAAATT AAAATTTACTCAAAGTTATGACAAAAGATTGAAATTATTCAACTTTTCTA AAAAAGTAGTGCACGCCACTTTTAATACAATACAATTTTTTTCAGGTTGG TTTTCACTGACAATAATTTCGGGACTTTGAAATTTGTGCACTGGTAATTA TAATTATGATTTTCACTTACCAAGGCTCATCCAATCCCGGGACCATTGCG TTTGAAGTCAAGAAAGAGAGGAATCTTAACCTTTCTCAAGTAAGAAAAAG TGAAGCCTTGTTTGCCTCACATTTAGGACTTTTTTTGAAAACACGCGGTT CACGTGTTTTGGATGGGAAATAAGCTGCTTTATTTCCCATCCAAGAGTTT CGGATCCAGCCCTTTTGCGGCTTTGAAATCAATGGGGTGTACTGCCCTTG TCGACCAACAGGGCGTGCTGAAGTTCGACAAAATAGACCCTACGTGGGAC ACGTAATTTTGAAAATTTTACCAAAATTTGCGTAAAAGGTGACGCTGAAT TGGACTAAAATTCCAAATATTCTTAAAATTTGGGCATTCAACATGCTTTC CTTGTAGAAAAAAAGAAAGAAGCCCGAAGGATTGAAAATGATATCTTGAT CTTTCCTCAATCCACTTTTACGAACAAGATTCATAAAAAGGGCTCTTCCA GAAAAAATCCGTTCATGGGGGGTGGAGGATATATTATTTTTTTCATGAAT TACCCCTGGACATTTTGATTTTTAACCCCCTGGACAAACNNNNNNNNNNN NNNNACAAAAAATTACCCCTGGACATTGGAATTTACCCCCTGGACATTGC AATTTTTTGGTATTTTTTAAATACCCCTGGACAATTCATCCTCCACCCCC CCATGAACGGTTTTTTTCTGGAAGAGCCCAAATGACGTTTTTAAAGATTC ACATTCATTACATCGCGACAAATGGGGTTTCCATGTTTTGACGTCAAAGA ATCGAACGTCAGAAAAGACGGGGGTAAACATTCGAAAATATGTCAAAAAG AAGACAAGAAAAAATAATTTGTGATTTTTCCTAAGTAACAACGCTTATTT ATTCATTTTTCATACTTCTTTGATGAAAGAAGTATATATTTTTGAAAAGT AAAATACTTCGTCTATCATTTACTCTTTTTTGAGCTCTTTACTCCAAGGA TTTCTCATTTTGTCAGCCGTTGAACTTCAGTGCTTTTTCGAACAAAATTC TTAAACCCTCCTGTGTTCCAGGGTTCGTAGAAAATCGTGGGCATTTCTTT ATCTTGCTAAGGTCCATCTTTCTTTGAAATTCAATCTTAGACCTTTCCAA AAATGTATAACAAATACAAAGTTTCAGGTCTGCGATGCGGTGATTTTTCA CTTTGAAAAACAGAGACATTTTTCCTTGAATTCCCCTAATGTTTGTTTAC ATGTCAGGGAAAACCCGCATTTAACAATAGNTGGTGATTTTTCACTTTGA AAAACAGAGACATTTTTCCCTGAATTCCCCTAATGGTTGTTTACATGTCA GGGAAACCCCGCATTTAACAATAGCAAAAAATTTGGAGGTCAAAACATTC GAAAAGTATAATCAAAGGGCTTTCCAAATATGTATAATGTTATGGGGTTT CCTTTTGAAGAATGTTGTGATTTTCGAACAAGAAGAGATGGCATAATAAA AACTTTTCTAAAATCTAGATTTTGACGTAAAGGGCATAGGGAATTTTAGC ATGAGTATTTCTTAGTTTTTAATTTCATAAAGAGTTCAAAGCATTTAAAA ATCCAAAACATATTTTACATTGATCAACAAAAGTAAATTAAACATCGAGC TGGGTTTGATTTTCAAACTAGCAGCCTAATTTTCAAATATTACTGGAAAA TAGTCTTACTGAATGAAGAACTTCGAAAAAAAAATACCTTTTTCGCACAA ATGGCCGACAGTTCACAGATGTTTCTAGCTACTCATTCTTTTTTGCCATT TTTCATTTCCAAATTAAATAAAAACTTACTGGTCATCCTTGGGAGTTTTT TATATCCAAAATTGAATCACCATTTGATAAGAATAAATTTTAGATAAATA AAGGCTGCCTTCGATAACTGAATTTTGAAGGCAGGAAAGTACTGTGAAAA CTGAAGCAAACAACAAAGCATTCCATTTTATACATACCTCTTTCAATCGA ATCTCAATTTAATTAATTTTACAACTTTCCTTTATTCTCAAGTTTTATTT TTAAGAATGAGAGTAATAATTAAAGCACGATCAGGTTTTATTTTTTGAAA AACTCAATGTGTTCTTTTCAAAAGCCAAAGTCTCAAATGAAACTTTTTGT TTTGATTTTGATTGCAACATTTTCGAATCTTTCGAATGCGTGACGCAATT TGATTGGCACAAAATAGAACGCGCGCGAAAAAACAATGCAATGCAATCTT CTCTGAGATGACAAAAATCGCAACACCAATTTCGCGCGATGATGTTTGGC TGAAACCTTCAAAGAATTTTTTATATTTTATCTTTTAGTGACAAAGAATC GAGAGAGCATATTTTGGTTCTTGAAAGACAGGTGAGCTTGAGACTTGCTC TACAAAAATCTATGTTTTAGGCTCATAGGATTTAGCTTTCTTCATAAGTA CCACCATGCAAAAAAACTTTGCAAAAGGCAATTCTACAGAATCGTTTCTT TACTGTTTAAGATAATAATATCTGTCTTTTCAGGGTGCTTTTTCCGATTT TGTTGCATCGACAAATCTTCCTGTAAACCTACAACAGAAGGTAAAGCTCT AATTCATCTCTTTGTTATAAATTTGTTTCTATTTTTTGGTGATTGAAATT TTTAGAAGCATTATCGGCTGGTGAAGAATTCCTGTTTTTTCTAAATAGAT CCCTGGTGGATTCCCATCCAGTGAATTCCCACCAAGCTCCATGGCGGATT CTTACCTATTATTTTTGCTATGTTACGTATTTTTTATCAAGCTTTTTTTA GAGAAAATTCCAGAATGAAAAAAGCCTCGAAATGCAATTTTTCAAATATT TCTTTTCGACCACGAAAATTAGTTCCCGCGAAAATTAGTTCCAATAGGGT AGTAGGGGGAACATTGTTCGTTTTTCTGAGGTCGCTTGATTTTTTTAGTC AACGCAGTTGTTATACATTTTTGAAAGCTAAGGGGTAGGTAGTAGGGGAA TCAAAATAACTTGGGTGCCAATTTTTTTTTCGGACACTTTGGTGTGATTT TGGGACAAATATTACGGTCTCAGGTAAAAATCATAGGGTCAAAAATTTAT GAAAATTTTAGCTTGAGAAAACGGAAACTTGTTGTATACTTTTGGAAAGC TTTAAAAATAGTAAGATTACAGATGTATTGCAAGTATAGGTGATTTCTGT ACCTAACTCGAGATATCAACCCTTAAAAACAGTGTTTTCAGCCAGAAACA GCTGTTTTGTCCAGTTTTTACGCTTTTTGGAGCTCAATATCTCAAGTTAG GTACTGAAATCACCTATCCCCGCAATATATTTCTAATCTTAATTTTTTAA GAGCTTTCCAAAAATATACAACAGGTCTCTATTTTTTAAAGCTAAAATTT TCATTAAATTTTGACCCTATAATTTTTGCCTGAGACCGCCATATTTGTCC CAAAATCACATCAAAGTTTCCGAAAAAAAAATGTTATTTTGATTCCCCTA CCCCTTAGCTTTCCAAAAATGTATAACAAGTACTTCGGCTAAAAATATCG AGCGATTTTACAAACTTCCCCTTACTAATACCCATTTTAATCATATTCTC TTTTCCAAAATGACAATTTTTCGAACCCTAGGCAAACACGCCTGTCTCCT CCGTTCATGGCAATTTTTTTGCGTTCTACCCTCTTTCATTGGATACCTCA GTTTATGCCTTCATTACTTACTCTTGTATGTCTACTTTTAGCTGATTGAC TTGTTCGATTGACTGAAATTTGTCCCTGAAGACTAATTTGTCAAATAAAA GAGAATAATAACAGAAACAATTCGTTCCCATGATTATTTGGTACTTTGCA GACCTGTCTGTAAAATACACGTTGATCACCTGCTGGAACTGAGGAACTAC TGGAGCTTTTGACTTTCACCAGTGATAGATATTAACCATTTAAAATTTAC CTAAAATACTCACAGCGTAACCGCTCCTTCAATTTTGCTTAAATTTTGTC TGGAAGCTTGTATTATCAATACTTAACTCTTTTCAAGTAATTAGCATTTA CCAATTACTAGATACAGTATCCTAGGGCCTATTTAGATAAAAGAGCAATT TAGGCCGGTCTGTGAAATACACGATACCAACAGGTGTCAAGAATTTATCC TGAGCCCCAATAATGCATGTCACGTACGTGGAGTTGCCTCACAAAATTTA AGCAAAAAAATATAAGTGAATAAAGTTAGAGGGGGGTCATGTTTTCGGTA TTTTCAAAGAGTGACGTCATCAATGATGCCAAAATTTTAACAAAAGATGC CAATTATTTGGTGAACACTCAGGCACACTTTCTAAAAATCGAATCAATCG GATAAATATTTCAAAGATTATCAAAAAATTCGCCTTTGGCTTCTTTGTTG AATAGAAGGGTTAAAAGAAATTCATCTTTTTATCTTTATTTATTTTATTT TTTTCTTCAGAAAAATGAGAAGATTCTTGTTAAATACAATAAATTCGTTA AGGTAAAATACTTCTATTCTGTATTTTCCAGTAAAGTCATCATTAAGACT TCCAAAGACTTCCAGCAACCTTATATTCTGACATGGATGTTGCTAAGCTG CCAAATTTCAGTCTTAACCAAATTGAATGTTATTCTTTCTTTTATTTAAG ATAGTAGACAAATGTCAATTATTTTGGAATGTTCTAAAGGATTTGGACGA AGAATGTTGGATATTGGAGCCTGAAGTTCCATCATATGATTGTCAATATC GAAGAATTGCACTCGGTATGAAACATAATTAAGTTTCTGATAATCTGAAA TTTTATTCTGAAATCTTTATTGTTTATATTTATTCAAAGACCTGTATCCA GCTTATGGTGTTTTAAAGTCCGTGTCAAAAAGGTGTGCAGTGTTTAAATT TTTTACCAAAAGTTATGGCCAAAAATAAAACAACTGCAAACTTTTTAGGC AGTAATGTGCCTTTTCGGCTTGTTGTCTCTGTTCACTAGCTTGCCGCAAG TCGTATATTATTGCTATTAAAATTAGTTGATTTCGTTCCGTTCCGTATCC GGAACTCTAACTCATCTTCAATAAACTGTTCAATATTCTTCAAGAGTTCT GCATATTTTTCGCGTTGGATGGTCTCCTCTTGCCGAACATCACCCAAAGG ATACTTATATCTATACACCAGCTCACCAATTGATGCTAATAGAATCACAA AAACTCCAATGAGAGCTGTATAAATCATTAGGCCTTTATCTAAGCCGTCG AAGATCTCATGTAACGGCCTTATCACGTATTTGTTTGTTAATAAAGGACT GGCGATTGTTTTAGTAATGGTCTCCTTTTCATCTTCTAACTCTTCGTCCG ACATTGCCATCTCATCATCTTCACAATTCAAAACTGTTCTGTTATAATGA ACAAACATTTTCAGACTTGTATCTGTCTCCAATTCACGTTCAATTACTAA ATCCTTCACTTCATCTTCGTGGTCTGCAAAGAAGGATGCTGCAGCATGTT TCTCCATCAAGCCAGCGTCTGCAGTACCGCTTTTCACTGCGTCGATAATT TCATCGTATTCATTAACACTTACGGATGTACCCAATAAGTTTTTTCGCAC GATCAAATCCTCGATGGATCTATCTATAACAGCGATGCTTTTTCCTTTTG TATCATACTGCTCGTCGATAGCGTTCCAAGCAGAGGCTGTGATCAAAGCT ACCAACATCAATCCAAAAATAATCCAAATGATAACAATCAATCGACTTAA TGGATGTTTAGGAGTTTTATCCCCATAACCTACAGTCGTCATAGTTACAA CTGTAAACCAAAAACTGGACCACAATCCGGTACCGGGCGATCGGGGAAAA TGATCACTCCCGGCTAGTGTCTCAATTATCCAAACGATGGTTGCGATAAT CAAGGCACAGAGTAAAGAAAATACAACAGCCGTCATACATCTTTGAAATG ATTTCAAAAATTTGACCAAAAGTAGGACTTCACCCTTGCGCACTATGAGA ACTGGTCGTGTGTGAATCAATTTTGATACCTCGTAAAAATTGTCATTCAA ATGTTTCATATCATTATAAGTCATGGGTCCAACCATTATCAAATCGTTTT CAGTAACTGTTTTACTCACATTTAACATTTCCAAAAGTTTTGTCTCATTC TTTTCTTGAATCAAATTCAACATTTCTGTATGGTGAGCTATTCTGGTGAT TCTTGATTCATCTGCCTTCGGAATGACTTGATCACACAATAGAAGGGTGC CTCGTGTAATCAAATGATTGGCCAGTTTCCCATAAGGGTCTTGATCAAAT AAATACAAATGAGTCTTGAACTTCATATCTTCCTCTTCTGCCTTTGATGG TGTCATCAAAACGCAAATAATTCCCATATGCAATAACTTAGTCATATTGC TAGTGAGTCTCTTTGAATTGAATTGTCGTGGACAGTATATTTTTTGTTTT GATAAGTAAATATGGTAAATTGTCGCTTATTATAGCTCTCAGTACCTCAT TGATCCAATAGATGGTATTATGTTATCGCTTTGATTTTCTTTTCGTACAG ATGATATATATTCGCTTCAAAGATTTTGTGTGTTTGATTTCTTAAAACTT TTTCTTTGAATTATTGAATTCTTTTAGCGTGGGTCGACTTGTATATACTC CTTTGATAAAATCCCTATTGAAATTGTTCTCTTTCTTTGTATCAAGAAGT AATCTCGCTTCTATCGAACCTCTACTGGTTGCCCAAATTTAATTTATTAT CCTTCTCAGCATGTAACTGGGATGTAACTCAAAACAATTCTGACATAGCA GTTCTTCCTTTCCTTGTTTGAAATCAAAAATTCTTTCTGATAAAATATTG ATTTTATTATTATTTTTCCTTGCTATATTTATATTGATAACATTCATATT TCGATCGCCTTTCCACACTATATTGATATTTTCACATTATTTTCCGCAAT TTTTTACAGCCGACATCAATAACTTGATTTCTTCATTCAATATGATTAAC TATCGTCAAGTAACTTTTGACTTTTTCTCTTATTCAATCAGTTAGTTATG TTAACAACAAAACGCGAACGCAAAAGCAATCTGTTCGAAGATAGCAAGGT GTTAAAAAATTATGATGTTTTTAGAAAGCTCCTATAAAACAAAAACAAAA AATAGAAAAATAAAACTTGTTTTCTCCCTTTGNTAGCAAGGTGTTAAAAA ATTATGATGTTTTTAGAAAGCTCCTATAAAACAAAAACAAAAAATAGAAA AATAAAACTTGTTTTCTCCCTTTGAATCTTGTTTTATGATGTTAAGAAGG TTCAAAAAATGAAATTATCATTGATTTGTTCCCAAAGTTTTGGCGGAGGC CCCCGCACATCAAACGGCTCACTGGGACACGCGCAGAAAAATAATCTGCA CCCATGCAATGAAAACTTTAATGAAACCATTTTCCGTTGCAAAATTCTAC CGAACTCGTCATTGCCGACAGGTTTAAGTAGTGAGGGGCACAACCCAAGA CGGGTTTCCGATTCCACGTTCGGTTCGGTTCGGTTCGTATATAACCAAGC AGGTCGGCCATGAACACACGTAAAATGGCTAGTCGACGCCATTAGATTGG CATTGGAAAATTAATGTTTGCAGGAGTGGAGGAAAGATATATACAAAAAA GTTTTTCTTTTTCAGGGCTACTCTAGAAACAATCTACACTTTCTTCTCTT CTTAGGTAAGAATGCTTCATTGAGAATCGATGTCAACCCACTGCAACCGT CCACCTTCCCAGAATGCCGTTTCCTTGGTCCTTCTACTGGTAAGTCCGCA GTGAAGACCATTTTTAGCCTACCCCTAATAGACCTTATCGGAGTTTTTGA TTTTTCTAAAAAAGCGATGCATTGTGGGATTGTTTTGAGTGTATTACAAT AGAATTGTAATTACATTACATTATTGTAATCCACTCGAAACAATCCCACA ATGCATCGCTTTTTTAGAAAAATCAAAACCTCCGATAAGGTCTATTAGGG GCAGGCTAAAAATGGAGAAAAAAAATTTGGATTACCAAAGCATGGTGTAA AAGGGGCCGGTGTAAAAAGGCCTTCCTACGCTTGTATTTTCGATACCGTC GTCGAAAGAACTTTTTTGTATTTTCGTCACCAGTCTCCTCAAAAACTGAC TGCGCCGTTAAGGGTTGATAGGTGTTTTTCCCAGCTGGAACACAGCGTTG TTTTAACGTTAATCTAACGTTATATGGATGTTGTGAACGTTAGATTAACG TTGAAACAACGTTGTGTGCCAGCTGGGTTGAAGCTTTCTCCTTAGAACTA AAAACTGTCCCATACCGCTAGATGTCGTATAACATAACTCTCTGTAGTTT CAAAAGTTGAAGAAAACTCGCGGTCTCTTGAAAAATAAGTTGAAAAAGTC AACCCTTCCCAGTCGTTCTTTTCCCTTTATACAAATGCCCAGCTCTATAC CCACCCATCCACAGTATCGTATGGAACTTAGATAGTAGAAGAAGCGATGA CGATGATAACTGGATAATGATTGTAAAGAAATTTATATGAATGTTTTTTT TTAGTTATCGATCCATTAAAGCAAAATTTGAATAAACACATGCACCTATG GTACGTTTTTCCTCTCTTAAAGCAACCTGACATGCATCTGAGTTAGGCAT AATTCCATGCTCGAAACTCTGCTGCTCAATTAATTTAGACCAATGAAAAT GCGATTTTATATGGATAAATTTTAGATAAATGTTTGGTAAACTGCTGCAG GATAGTAGTCAATAGGGTGCCAATCTTCATTTTCAGAAAAAATTTTCTTA GGCACCACCACCCCTTTTCAGTACCTGGTGCTAACATTTTTGAGAATCCT CATTTGAGAAAAAAATGGACTCAAACCCCTTATTTAAAAGCCAGTAATTA AGAAAATATTGGGTACATTACCCTGGAATATTGCCTTACCATACACACCT AGCATTCAATTTTACCTCACCAATAAATATACTTCCGGTGAATGCAATCC GATTATTTTCGAGAATTTTAGCGAAAGATTTGAGAAGTTCAAGTTCTGAT TTGTCGAAATTGGGGAATCCTTACCCATTACCTACCTAAATCCAAAATCC AGGACAATAGCTTAAATATGAGAGATCTACCCAGCCCACCCCAAATATAG TACCAGATATTAGTATATAGATACCTCCACCCAGCTATTGGTCAGTACTC TGCAGCTGTTCCCCTGTTAATACTCCTAAGACTATAATTATTGTTCAATA GGGACGATCAGAAAGATTTGTTGGACAATTTACGAACAGTACTTGACATC GAATTCCCATCGAAGACAACCGTGGAAATCAATGTAAGGAATTTTTGATC GTAAGATCNCTCCTAAGACTATAATTATTGTTCAATAGGGACGATCAGAA AGGTTTGTTGGACAATTTACGAACAGTACTTGACATCGAATTCCCATCGA AGACAACCGTGGAAATCAATGTAAGGAATTTTTGATCGTAAGATCTACTT TGATCAATATAGAAAGGTTCCAGAAAAACCTAACCTGGAGTCCGCTTAGG GCTCTTGATAGACTGGATGGTGCGATTAGGTGGCCCGGTAGTACATAGAC AGCTACAGCTGCCTGAACTTTGCTCTGATGATTTTGAAGTAGACTAGAGG ACATCGTAATCTTGAATTAATTCTAAATTCTAAAACCCAGTCAAAGTTTA CAAAACTATATTAGCAACATCAAAATACCTCCTAAATTTGAAAAAAATAG TCTAATGGTCATATTTTTCTGTAAGTTTAGCTCCAAAAAGAGACTGGATC TACTGGCATAGATTTGCTACCACCTCAAGCAAAGTCAAAAAATAGAGTCT GCTAAATTACGCCAGGCCATTTATCAGCCCTATCCAGTCCATCAATAAGC TACATGTGCATTTAAAAGTTGCAAGTTGCGACTACATTTAAGGGAACTAA TTTTCGCGGGAACTAATTTTTGCTGAACTTATTTTCGAGGTACAAGGATT CTAAATTGGCCTATTTTGCGGAACTAATTTTCGCGGCTGGCACACACTTT TCGCCGAAATTCTTTCGTATTCCTTGGTTTTTTTGAAGGTTTTTGGTAAA TTTACATTTTTCGGAACTAATTTTCGCGGTAGACACCCAAAAATGCGAAA ATTATTTCTCTTTACATTTATCTGGAATAGTAAAAATTGAGTGCGAAACC TGACGTTTCTTTTCGCAGGAATTACGTGTTGAATGTGGTATTTGTTATGC ATATCAACTGGAGGACGAGATTCCTGATAAAAGTTGTGAAGATACAAGAT GTGCTCAAACTTTTCACTCATCATGCTTACTTGAGGTAAAATCAATGTCG AGAATTATTTTACTTCTAGTTTTTTCTTGTTAGCGATTTTTCAAGTTAGC AATAATCATATTTTTGTACATTACTCATTACTTCGAGGCTAAACGTAGAT TATAGTCCGATAGAATTAGCTCATAAAAGGCCCTAACCTTGAAATTAATC ATATGTGGCTGAAGTTTGGAACCAAGAACCAACATAAAAACTGTTGTTGC ATTTTTATGTTGACCTCAATTTTCAGTACAAACCTCTACAAACAAGATTT CCAAAAGAGATTTGAGCGTTTCGATGGTTAGATCAATAGATAAATGGATT TTAAAGATCAATTATTTTTGATGAGTCAGTACACTTTAAGCAAATTAAGT CAGCAGAACTTTAAAAATCTTGGTTTAATCACTTAAACTAGGCTTTATAT GAGTTTTCCTTATTTTCATTTTCCAGTGGATGCGATGTCTTCCCTCATTC CGTCAAAGTTTTAATGTAGTTTTTGGTCAATGTCCATACTGTGAAAAGGT AATTTCATTCTTTTAATGTTTGAGTTGAGTGTATAAATGCTTTCAAATGA CTAGCCTCCAAATGGGTGTAGCCGACTTTGTTGTGCAATGAAATTTCTTT TGACTAAATTATCTTGGTTACTTTTCTTTAGAAATTGACCATCAAATTGA AGAAATGAATATCGATTGGGTGAAAAGGAGCGAAAATAAAGATTGTAGCT CGGAATATTACGGGCAAACAAAATTGTACAATAATTAATAATGGGTATAT TTGTGGAACTTATTTTCTATTGCGATGGAACTATGGTATGGAGTTGTTCA AGATGAATATGCTAGCTATGTAGAGGAAAAAAACTTATNCACAGGAAAAA ATTATTGATTCCCTAGCCTAGGGATTGTTCATTTTCAGATGTGTTTTTTT ATTCGATCACATTAGTCTAGAATTTAAAGTTCGGGAAAGTAAGGAACTTA GGGAAACCTATTTTCCTATGCTGGAAGTGTATTACCAATGTGTTAGTGAA AACGGATTTCCACATGTGGAAAACTAATATTTTTAACATTCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033044XLOC_033044Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052190-exon-scaffold_212-1575043694:60954..61109TCONS_00052190-exon-scaffold_212-1575043694:60954..61109Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1575043694:60420..60481TCONS_00052190-exon-scaffold_212-1575043694:60420..60481Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1575043694:60215..60275TCONS_00052190-exon-scaffold_212-1575043694:60215..60275Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1575043694:57722..57778TCONS_00052190-exon-scaffold_212-1575043694:57722..57778Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1575043694:57298..57401TCONS_00052190-exon-scaffold_212-1575043694:57298..57401Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1575043694:57067..57114TCONS_00052190-exon-scaffold_212-1575043694:57067..57114Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1575043694:54679..54721TCONS_00052190-exon-scaffold_212-1575043694:54679..54721Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1575043694:54470..54526TCONS_00052190-exon-scaffold_212-1575043694:54470..54526Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1575043694:52558..52599TCONS_00052190-exon-scaffold_212-1575043694:52558..52599Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1575043694:52295..52409TCONS_00052190-exon-scaffold_212-1575043694:52295..52409Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1575043694:49271..49354TCONS_00052190-exon-scaffold_212-1575043694:49271..49354Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1575043694:48460..48505TCONS_00052190-exon-scaffold_212-1575043694:48460..48505Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1575043694:47590..47671TCONS_00052190-exon-scaffold_212-1575043694:47590..47671Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1575043694:46725..46841TCONS_00052190-exon-scaffold_212-1575043694:46725..46841Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1575043694:46212..46283TCONS_00052190-exon-scaffold_212-1575043694:46212..46283Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1575043694:45667..46078TCONS_00052190-exon-scaffold_212-1575043694:45667..46078Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1510915933:60954..61109TCONS_00052190-exon-scaffold_212-1510915933:60954..61109Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1510915933:60420..60481TCONS_00052190-exon-scaffold_212-1510915933:60420..60481Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1510915933:60215..60275TCONS_00052190-exon-scaffold_212-1510915933:60215..60275Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1510915933:57722..57778TCONS_00052190-exon-scaffold_212-1510915933:57722..57778Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1510915933:57298..57401TCONS_00052190-exon-scaffold_212-1510915933:57298..57401Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1510915933:57067..57114TCONS_00052190-exon-scaffold_212-1510915933:57067..57114Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1510915933:54679..54721TCONS_00052190-exon-scaffold_212-1510915933:54679..54721Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1510915933:54470..54526TCONS_00052190-exon-scaffold_212-1510915933:54470..54526Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1510915933:52558..52599TCONS_00052190-exon-scaffold_212-1510915933:52558..52599Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1510915933:52295..52409TCONS_00052190-exon-scaffold_212-1510915933:52295..52409Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1510915933:49271..49354TCONS_00052190-exon-scaffold_212-1510915933:49271..49354Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1510915933:48460..48505TCONS_00052190-exon-scaffold_212-1510915933:48460..48505Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1510915933:47590..47671TCONS_00052190-exon-scaffold_212-1510915933:47590..47671Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1510915933:46725..46841TCONS_00052190-exon-scaffold_212-1510915933:46725..46841Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1510915933:46212..46283TCONS_00052190-exon-scaffold_212-1510915933:46212..46283Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1510915933:45667..46078TCONS_00052190-exon-scaffold_212-1510915933:45667..46078Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1491911889:60954..61109TCONS_00052190-exon-scaffold_212-1491911889:60954..61109Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1491911889:60420..60481TCONS_00052190-exon-scaffold_212-1491911889:60420..60481Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1491911889:60215..60275TCONS_00052190-exon-scaffold_212-1491911889:60215..60275Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1491911889:57722..57778TCONS_00052190-exon-scaffold_212-1491911889:57722..57778Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1491911889:57298..57401TCONS_00052190-exon-scaffold_212-1491911889:57298..57401Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1491911889:57067..57114TCONS_00052190-exon-scaffold_212-1491911889:57067..57114Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1491911889:54679..54721TCONS_00052190-exon-scaffold_212-1491911889:54679..54721Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1491911889:54470..54526TCONS_00052190-exon-scaffold_212-1491911889:54470..54526Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1491911889:52558..52599TCONS_00052190-exon-scaffold_212-1491911889:52558..52599Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1491911889:52295..52409TCONS_00052190-exon-scaffold_212-1491911889:52295..52409Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1491911889:49271..49354TCONS_00052190-exon-scaffold_212-1491911889:49271..49354Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1491911889:48460..48505TCONS_00052190-exon-scaffold_212-1491911889:48460..48505Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1491911889:47590..47671TCONS_00052190-exon-scaffold_212-1491911889:47590..47671Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1491911889:46725..46841TCONS_00052190-exon-scaffold_212-1491911889:46725..46841Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1491911889:46212..46283TCONS_00052190-exon-scaffold_212-1491911889:46212..46283Clytia hemisphaericaexon
TCONS_00052190-exon-scaffold_212-1491911889:45667..46078TCONS_00052190-exon-scaffold_212-1491911889:45667..46078Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_212supercontigscaffold_212:45667..61109 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.00406 2.12399 3.96096 2.36632 10.2597 4.39324 9.2943 8.04583 4.16749 2.46298 3.48568 2.33345 2.1129 2.18631 0.259698 1.50411 1.89441 1.09749 0.199739 0 1.38236 1.39119 3.86973 3.06339 10.2416 11.1918 0.411586 0 1.08986 2.82058
Blast
BLAST of TCONS_00052190 vs. Swiss-Prot (Human)
Match: FANCL (E3 ubiquitin-protein ligase FANCL OS=Homo sapiens GN=FANCL PE=1 SV=2)

HSP 1 Score: 281.952 bits (720), Expect = 3.279e-89
Identity = 134/355 (37.75%), Postives = 209/355 (58.87%), Query Frame = 1
Query:  100 ILIPQDEDGICFCGYIIIANKDEFRVNIHLKEKGSLKDARLDCSWDVSQTLKGYEEAIQKKLNQSSSIHEFLTELKALVE----NITSFSSLNDRPDDIGSHQLTEIFQEIEQIGWDKLVFTDNNFGTLKFVHCDKESREHILVLERQGAFS----DFVASTNLPVNLQQKKNEKILVKYNKFVKIVDKCQLFWNVLKDLDEECWILEPEVPSYDCQYRRIALGKNASLRIDVNPLQPSTFPECRFLGPSTVIDPLKQNLNKHMHLWDDQKGLLDNLRTVLDIEFPSKTTVEINELRVECGICYAYQLEDEIPDKSCEDTRCAQTFHSSCLLEWMRCLPSFRQSFNVVFGQCPYC 1140
            +L+PQ+     + G+I    +D F + I L E   LK+ARL CSW +   L GY   +Q+++  S  +  F+ ELK L+E    N     +L   P    S     + +EI  +GWDKLV+ D  F T+K    D   REH++ L+ +  +     D+     +P          ++  Y++F+  ++  + FW+V+ ++DE+ W+LEPE P      RRIALG N S+ I+V+P  P+  PEC FLG   V+ PL   L++++HLWD +  +L NL+ VL+I+FP++  +E ++  ++CGICYAYQL+  IPD+ C++++C Q FH  CL EW+R L + RQSFN++FG+CPYC
Sbjct:   14 LLLPQNRSKTVYEGFISAQGRD-FHLRIVLPEDLQLKNARLLCSWQLRTILSGYHRIVQQRMQHSPDLMSFMMELKMLLEVALKNRQELYALPPPPQFYSS-----LIEEIGTLGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQSSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVSINIEVDPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLEIDFPARAILEKSDFTMDCGICYAYQLDGTIPDQVCDNSQCGQPFHQICLYEWLRGLLTSRQSFNIIFGECPYC 362          
The following BLAST results are available for this feature:
BLAST of TCONS_00052190 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FANCL3.279e-8937.75E3 ubiquitin-protein ligase FANCL OS=Homo sapiens ... [more]
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