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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052196 ID=TCONS_00052196|Name=TCONS_00052196|organism=Clytia hemisphaerica|type=transcript|length=1476bp
TCCTTTacacatcagattataaaaatacaggacgatTCTCCTGTCTAAGA
AAACCCGAGACATTGATATCAAGTCATTTGTTTTGGTTTAGccatttgtt
ttggttttcaaaactaCCCGAAACGATTGAAAAGAAACCTGAgatatttt
ggtgaaaatttctttgCCACATATGAACATTTGGGAAAACACCACGACAT
ATTTACTCAATTTTGCACAATAAATTACTCTATCCATTCAAGTTAGAAAT
TATCTGTTCCGTATTACAGAAATAAAACCCTAATACTTCAGCTAATACTT
GATATGACGTTGCGCAGGAGGATTTACTGTGTTATCGCATACTAATTCGG
GATAATGTTGCGTGCCAATCttatttgttattcaatagaccgtCACATTT
GCGTAAggcttaaataaaaaaatgtccTGTTTCCAGAAATCGGCCGGGTG
GACTTTTTTAATAATTGTCATTATTAACAttgtactttttatttcaatag
tATTAcaacataaaaattcaaaaatgcatTTGATGTTTTATCTAAACGAC
AAAAAGGAAAGAGTTTACACATTGAAGAAGACGGACCCAACTGGAAAGCC
AACATTATCAGCTCATCCTGCTCGGTTCTCTCCTGATGACAAATATTCTA
AATATCGTGTTGTTCTGAAAAAGAGATTTGGGATTTTACCTACACAACTC
CCAAAACCTGTGTATTGAGTAATTGATGCAGTTGTtgtgtaaatattttt
atctggGATGTCTATGTTGTTTATATTGaacaaacatttttgaaagatgG
TATTTCCAATGAAtgggattgaaaaaaaatcttagcgattttgtgtttta
ataacttacaatatatttttaacaACTTATTTTTACCAAAAGACAAAATA
CAGAACTAATTCtcattttcatcaatttctCTCACAATTTCTAGTACTTC
TCATatgagttacggcatgtccaaagtaaaagtgaagcagttccactcac
tttcaaaatgtcaaacatgttTGAATAAAGGGCCACAGAATGTATATCAA
CGTTTATACctgttagaaaaatttattttgaggctataaaaagttataac
aaaaatttggaaatttgaatatcttgtgAAGTAATCATATaaatgtcaaa
ttttgaccatagaAAGATATTaatgtgaaatttttttatgtgatacagta
tattgaaatatactGACATCATCAttattaaaagaattttaaaaacttgT
ACTTGTAGAGAATACATTTATTGTGTCAAAATTCACGCTGATATCACAAA
TAATATTTCAGCTATATTTGatgttttgaaagtgagtggagctgctttac
ttttactttggacatgccgtaactcacttgaaTGATATCCTAATTCTATT
TCCCCAACTTTTTGTGATAATtatattttaattgttttcgaaGAGCTTGA
AGCATTCTTGCAAGCTATTTTGAGAC Run BLAST on NCBI transcript from alignment at scaffold_212:61308..62783 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052196 ID=TCONS_00052196|Name=TCONS_00052196|organism=Clytia hemisphaerica|type=transcript|length=1476bp|location=Sequence derived from alignment at scaffold_212:61308..62783 (Clytia hemisphaerica)
GTCTCAAAATAGCTTGCAAGAATGCTTCAAGCTCttcgaaaacaattaaa
atataATTATCACAAAAAGTTGGGGAAATAGAATTAGGATATCAttcaag
tgagttacggcatgtccaaagtaaaagtaaagcagctccactcactttca
aaacatCAAATATAGCTGAAATATTATTTGTGATATCAGCGTGAATTTTG
ACACAATAAATGTATTCTCTACAAGTAcaagtttttaaaattcttttaat
aaTGATGATGTCagtatatttcaatatactgtatcacataaaaaaatttc
acattAATATCTTtctatggtcaaaatttgacatttATATGATTACTTca
caagatattcaaatttccaaatttttgttataactttttatagcctcaaa
ataaatttttctaacagGTATAAACGTTGATATACATTCTGTGGCCCTTT
ATTCAaacatgtttgacattttgaaagtgagtggaactgcttcactttta
ctttggacatgccgtaactcatATGAGAAGTACTAGAAATTGTGAGagaa
attgatgaaaatgaGAATTAGTTCTGTATTTTGTCTTTTGGTAAAAATAA
GTtgttaaaaatatattgtaagttattaaaacacaaaatcgctaagattt
tttttcaatcccaTTCATTGGAAATACcatctttcaaaaatgtttgttCA
ATATAAACAACATAGACATCccagataaaaatatttacacaACAACTGCA
TCAATTACTCAATACACAGGTTTTGGGAGTTGTGTAGGTAAAATCCCAAA
TCTCTTTTTCAGAACAACACGATATTTAGAATATTTGTCATCAGGAGAGA
ACCGAGCAGGATGAGCTGATAATGTTGGCTTTCCAGTTGGGTCCGTCTTC
TTCAATGTGTAAACTCTTTCCTTTTTGTCGTTTAGATAAAACATCAAatg
catttttgaatttttatgttgTAATactattgaaataaaaagtacaaTGT
TAATAATGACAATTATTAAAAAAGTCCACCCGGCCGATTTCTGGAAACAg
gacatttttttatttaagccTTACGCAAATGTGacggtctattgaataac
aaataaGATTGGCACGCAACATTATCCCGAATTAGTATGCGATAACACAG
TAAATCCTCCTGCGCAACGTCATATCAAGTATTAGCTGAAGTATTAGGGT
TTTATTTCTGTAATACGGAACAGATAATTTCTAACTTGAATGGATAGAGT
AATTTATTGTGCAAAATTGAGTAAATATGTCGTGGTGTTTTCCCAAATGT
TCATATGTGGcaaagaaattttcaccaaaatatcTCAGGTTTCTTTTCAA
TCGTTTCGGGtagttttgaaaaccaaaacaaatggCTAAACCAAAACAAA
TGACTTGATATCAATGTCTCGGGTTTTCTTAGACAGGAGAatcgtcctgt
atttttataatctgatgtgtAAAGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052196-exon-scaffold_212-1491911889:61308..62783 | TCONS_00052196-exon-scaffold_212-1491911889:61308..62783 | Clytia hemisphaerica | exon |
| TCONS_00052196-exon-scaffold_212-1510915933:61308..62783 | TCONS_00052196-exon-scaffold_212-1510915933:61308..62783 | Clytia hemisphaerica | exon |
| TCONS_00052196-exon-scaffold_212-1575043694:61308..62783 | TCONS_00052196-exon-scaffold_212-1575043694:61308..62783 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_212 | supercontig | scaffold_212:61308..62783 . |
Blast
BLAST of TCONS_00052196 vs. Swiss-Prot (Human)
Match: NOP10 (H/ACA ribonucleoprotein complex subunit 3 OS=Homo sapiens GN=NOP10 PE=1 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.531e-21 Identity = 40/62 (64.52%), Postives = 51/62 (82.26%), Query Frame = 2
Query: 524 MHLMFYLNDKKERVYTLKKTDPTGKPTLSAHPARFSPDDKYSKYRVVLKKRFGILPTQLPKP 709
M L +YLN++ +RVYTLKK DP G+ T SAHPARFSPDDKYS++R+ +KKRF +L TQ P+P
Sbjct: 1 MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQPRP 62
The following BLAST results are available for this feature:
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