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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052332 ID=TCONS_00052332|Name=TCONS_00052332|organism=Clytia hemisphaerica|type=transcript|length=645bp
ggcattttgaaaaataatataaaaggGATCACTAGAACATTGAAAATCAT
CAAACAACTTGTACAACTACAAAGCAAATTGAAGAATCACTTCTCTCAAT
CGATCATTATGAAGGCTTTCATTATCTTGTCAATCATTGCTGCTTCTTAC
GCCCTTGAGGTTGGAACACAAACCGGTACAACACCACCAGCTGTCGCATG
TCCAAACTCTTTGTGTCAAGGTAAACCTGACGGAAACTTTGAATATTACT
ACTATGGTGATTACAACCCACACTATTTCGTCCAATGCTCAAACGGATTA
GCTTATTGCCAAGCCTGCTGGCCATTATCTTTGGAATTTAGTGAAGGATG
CAACCAATGTTTGTACAGCAAATATGACGAATGTGTCACCACACAACCAT
GGGAACCAGCCACCACTTTTTATTGCCCAGACAAATGCCCTCATTATGGT
CCAGAATTCAGTGGAAATGTCGAAGACCCAAACAACCCACACCAATATGT
TGCTTGTTGGAAGGGAGTCACTGTTGGATGTATTGCTTGtccagctggtt
tattgttCAACCAAAAANATGTGGATGTTACTCCCCGGTGTCTAATTGAC
TGGTCCTGGAAAAATAAGGCATTATTAACTGAAGGAACGATAAAA Run BLAST on NCBI protein sequence of TCONS_00052332-protein >TCONS_00052332-protein ID=TCONS_00052332-protein|Name=TCONS_00052332-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
GILKNNIKGITRTLKIIKQLVQLQSKLKNHFSQSIIMKAFIILSIIAASY
ALEVGTQTGTTPPAVACPNSLCQGKPDGNFEYYYYGDYNPHYFVQCSNGL
AYCQACWPLSLEFSEGCNQCLYSKYDECVTTQPWEPATTFYCPDKCPHYG
PEFSGNVEDPNNPHQYVACWKGVTVGCIACPAGLLFNQKXVDVTPRCLID
WSWKNKALLTEGTIK Run BLAST on NCBI transcript from alignment at scaffold_213:268151..269163- Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052332 ID=TCONS_00052332|Name=TCONS_00052332|organism=Clytia hemisphaerica|type=transcript|length=1013bp|location=Sequence derived from alignment at scaffold_213:268151..269163- (Clytia hemisphaerica)
GGCATTTTGAAAAATAATATAAAAGGGATCACTAGAACATTGAAAATCAT
CAAACAACTTGTACAACTACAAAGCAAATTGAAGAATCACTTCTCTCAAT
CGATCATTATGAAGGCTTTCATTATCTTGTCAATCATTGCTGGTAAGTTT
CTTTTATCGACGCTTGTTAGTTTTGACGATTCTCTAGTCTGATTTGCAGA
CCTATACTTTATATAAGAAATTGAGTAAAAAGTAACTATTCTCACATGCT
CCAATTTTGCGAATCACATTTTTTCGAACCAGTCTTAATCGGATTGTAAC
TCATGAACAAATTCTAATTGAGCTTTGTCGGTTATACATTTTGTTTCAAA
ATATCGTCAACTTTTACTCGTCTACTTGACAAACAAACACTAGGATAATT
TTACAGCTTCAGGTCTCCTAATAAAGACTCGATTACCAATTCATTCATTC
ACTCGCTCACTTGGTAAAGTTTGCTTAATAAATCTGAATCAATCAACTTT
TATCTTTCAGCTTCTTACGCCCTTGAGGTTGGAACACAAACCGGTACAAC
ACCACCAGCTGTCGCATGTCCAAACTCTTTGTGTCAAGGTAAACCTGACG
GAAACTTTGAATATTACTACTATGGTGATTACAACCCACACTATTTCGTC
CAATGCTCAAACGGATTAGCTTATTGCCAAGCCTGCTGGCCATTATCTTT
GGAATTTAGTGAAGGATGCAACCAATGTTTGTACAGCAAATATGACGAAT
GTGTCACCACACAACCATGGGAACCAGCCACCACTTTTTATTGCCCAGAC
AAATGCCCTCATTATGGTCCAGAATTCAGTGGAAATGTCGAAGACCCAAA
CAACCCACACCAATATGTTGCTTGTTGGAAGGGAGTCACTGTTGGATGTA
TTGCTTGTCCAGCTGGTTTATTGTTCAACCAAAAANATGTGGATGTTACT
CCCCGGTGTCTAATTGACTGGTCCTGGAAAAATAAGGCATTATTAACTGA
AGGAACGATAAAA Coding sequence (CDS) from alignment at scaffold_213:268151..269163- >TCONS_00052332 ID=TCONS_00052332|Name=TCONS_00052332|organism=Clytia hemisphaerica|type=CDS|length=1290bp|location=Sequence derived from alignment at scaffold_213:268151..269163- (Clytia hemisphaerica)
CTTCTTACGCCCTTGAGGTTGGAACACAAACCGGTACAACACCACCAGCT
GTCGCATGTCCAAACTCTTTGTGTCAAGGTAAACCTGACGGAAACTTTGA
ATATTACTACTATGGTGATTACAACCCACACTATTTCGTCCAATGCTCAA
ACGGATTAGCTTATTGCCAAGCCTGCTGGCCATTATCTTTGGAATTTAGT
GAAGGATGCAACCAATGTTTGTACAGCAAATATGACGAATGTGTCACCAC
ACAACCATGGGAACCAGCCACCACTTTTTATTGCCCAGACAAATGCCCTC
ATTATGGTCCAGAATTCAGTGGAAATGTCGAAGACCCAAACAACCCACAC
CAATATGTTGCTTGTTGGAAGGGAGTCACTGTTGGATGTATTGCTTGTCC
AGCTGGTTTATTGTTCAACCAAAAANATGTGGATGTTACTCCCCGGTGTC
TAATTGACTGGTCCTGGAAAAATAAGGCATTATTAACTGAAGGAACGATA
AAAGGCATTTTGAAAAATAATATAAAAGGGATCACTAGAACATTGAAAAT
CATCAAACAACTTGTACAACTACAAAGCAAATTGAAGAATCACTTCTCTC
AATCGATCATTATGAAGGCTTTCATTATCTTGTCAATCATTGCTGCTTCT
TACGCCCTTGAGGTTGGAACACAAACCGGTACAACACCACCAGCTGTCGC
ATGTCCAAACTCTTTGTGTCAAGGTAAACCTGACGGAAACTTTGAATATT
ACTACTATGGTGATTACAACCCACACTATTTCGTCCAATGCTCAAACGGA
TTAGCTTATTGCCAAGCCTGCTGGCCATTATCTTTGGAATTTAGTGAAGG
ATGCAACCAATGTTTGTACAGCAAATATGACGAATGTGTCACCACACAAC
CATGGGAACCAGCCACCACTTTTTATTGCCCAGACAAATGCCCTCATTAT
GGTCCAGAATTCAGTGGAAATGTCGAAGACCCAAACAACCCACACCAATA
TGTTGCTTGTTGGAAGGGAGTCACTGTTGGATGTATTGCTTGTCCAGCTG
GTTTATTGTTCAACCAAAAANATGTGGATGTTACTCCCCGGTGTCTAATT
GACTGGTCCTGGAAAAATAAGGCATTATTAACTGAAGGAACGATAAAAGG
CATTTTGAAAAATAATATAAAAGGGATCACTAGAACATTGAAAATCATCA
AACAACTTGTACAACTACAAAGCAAATTGAAGAATCACTTCTCTCAATCG
ATCATTATGAAGGCTTTCATTATCTTGTCAATCATTGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052332-exon-scaffold_213-1575043694:269022..269163 | TCONS_00052332-exon-scaffold_213-1575043694:269022..269163 | Clytia hemisphaerica | exon |
| TCONS_00052332-exon-scaffold_213-1575043694:268151..268653 | TCONS_00052332-exon-scaffold_213-1575043694:268151..268653 | Clytia hemisphaerica | exon |
| TCONS_00052332-exon-scaffold_213-1510915933:269022..269163 | TCONS_00052332-exon-scaffold_213-1510915933:269022..269163 | Clytia hemisphaerica | exon |
| TCONS_00052332-exon-scaffold_213-1510915933:268151..268653 | TCONS_00052332-exon-scaffold_213-1510915933:268151..268653 | Clytia hemisphaerica | exon |
| TCONS_00052332-exon-scaffold_213-1491911889:269022..269163 | TCONS_00052332-exon-scaffold_213-1491911889:269022..269163 | Clytia hemisphaerica | exon |
| TCONS_00052332-exon-scaffold_213-1491911889:268151..268653 | TCONS_00052332-exon-scaffold_213-1491911889:268151..268653 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:268151..269163 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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