TCONS_00052344 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052344
Unique NameTCONS_00052344
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2117

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052344 ID=TCONS_00052344|Name=TCONS_00052344|organism=Clytia hemisphaerica|type=transcript|length=2117bp
ttGCATTTGGCTTTTGGAAGTTGTGgaatttataaaatcaaaagaaaact
ttctACTTTTTGCTGCAACAACTTATCTCGGATGGACAAGCAAATATAAC
TAAATATCCATATTTTTACAATGGTCAAGCCAGCATACCAACTTTTGTTT
ATCACTTTGGTGGCTTCCATAATCGGGAATCAATGGACCACTGCTGCTAC
GATAGGTTTATACCATGGTACCATTGGATACAAACAGAATAGATGCTTGC
ATATTCATAACCGTACCCAACACTTGGTTCATGCTACCCTTGAATCGAAC
ACTATAAATGAAACGTTGTTTTTTGTTGAAGCGACTGGCCACTCGAAGAC
TAATCCTAAGCGTAAGTTTCGGAATAAAGCACGACAAAATTCATATCTTT
CTCCACGATTCTTCTTTGGATTAGCTAACGAACGAATCGATGCTGAAATG
AGTTTAATCCCGGACAAAAATCACGGTGGATTTCTCATCTCTTTAACTTG
TCGGCATAGATTTGCTAAAAAACGAGTTTTGGTCGTTTTTGAAGCNATTT
CATCTATTTAACTTGTCGGCATAGATTTGCTAAAAAACGAGTTTTGGTCG
TTTTTGAAGCAGCGGTTGAATCTTATCATTCACCCGAAAACTGCTTATAT
CCTGTcacaaaacaaacagaatttaCAATAGGTCGTTCCAAAACAACTGA
CCGCACTCATCCCGTTTCTATCAAAGGAAGCCGTAGAGACTCAACCATAA
AAGATACTAACCCATCTCTGGACTTGGATTTTGACCGTGAGAAACACCAA
GGACAAAATACCGATTCAGCAAATCCAAAATTTATTAAAGAATTTAAGAC
GGGAAAAACAATGCAACGAAAACGCAGAGAAACATCGGAGAGAGACGATT
CAAAGTTATACAGACCACGCCGGAATGTGAACTTGGAACCAGAGACTAGA
GGACCATTTTATATCAAGCTTTTTATTCTTATGGATACCAAGTTATATGA
CATGTACGATGGCAAAAGGGATGACAAAGTATTCAAAGCAAGGATACAAA
AGATAGTTGACTACGCAAATACTGTTTACAGAAAATACAACATCCGCATG
TCAATAGCCAAGTTTTTAGATCCACCAAATGACCACCAAGTACAATTCAC
CTCAAATTCAGGAGATTACCTTTCGCGCATCTCATTACACTTTGCAAGTA
CACGGAAAAATAAGTCATTCAAAGAAATAGATCACCTCCACTTTTTCACT
GGTCACCATTTTGATGATGATGTAATTGGGAAAGCGTACTATCGATCAAT
GTGTGCACCCTCCACCTCAGTGAGCTTTTCATCTGACTCGCCACATTGGG
ACGTGCAACGGACGGCCTCTATTTTTGTGCACGAGATAGGTCACAGTCTT
GGTATGGTTCATGATGACCCTACCAATTGTGTTTGCAAACATTCTAGAGG
TTGCATCATGGCTTCATATATTGTAACACCGGCGCCAAGATATTTTTCGG
ATTGTAGCGAAGAGGGACTTTTTAAGTATCTGGACTCATGGAGAAGTCAA
TGCCTTCGGGGAGATGGTTCTCCTGTTCCAGAAGAACGATTAGTACCCAG
GCCCAAGCCGGTGTGCGGAGACGggaaattagataaaaatgaagaatgtG
ACTGTGGAATCCCAGGTTTTTGTATGAATCCATGCTGTAACCCTTACACG
TGCAAACTAACCAAAGGCTCGGAATGCTATGAGGGTGGATGCTGTAAGCA
CTGCAAGTTGAAGACAAAAGGTACCGTTTGCCGACAATCCTTTGATGACT
GTGATCTTCCCGATATGTGCAACGGTCAATCGCCAATTTGTTCCAACCTT
CACAAGGAAGATGGAACTGCGTGTATTTACAGTGGAAAATGTCGTGGAGG
AAAATGTAAATCAAGGACAGTACAATGCGAACGTATTTTCGGTAAAGGTA
CCATGAACGGACCTTACACTTGTTATACTCGTATCAATAAAGTTGGTAAA
GATTTTGGTAATTGCGGTAACAAAGGATCAGTATATAAAGCGTGTTCGCA
GGCAGATGCTGAATGTGGCAAACTACAGTGTAAATCACCAACTGTCAATG
TAATGCCGATAAGTGGN
Run BLAST on NCBI

protein sequence of TCONS_00052344-protein

>TCONS_00052344-protein ID=TCONS_00052344-protein|Name=TCONS_00052344-protein|organism=Clytia hemisphaerica|type=polypeptide|length=419bp
MQRKRRETSERDDSKLYRPRRNVNLEPETRGPFYIKLFILMDTKLYDMYD
GKRDDKVFKARIQKIVDYANTVYRKYNIRMSIAKFLDPPNDHQVQFTSNS
GDYLSRISLHFASTRKNKSFKEIDHLHFFTGHHFDDDVIGKAYYRSMCAP
STSVSFSSDSPHWDVQRTASIFVHEIGHSLGMVHDDPTNCVCKHSRGCIM
ASYIVTPAPRYFSDCSEEGLFKYLDSWRSQCLRGDGSPVPEERLVPRPKP
VCGDGKLDKNEECDCGIPGFCMNPCCNPYTCKLTKGSECYEGGCCKHCKL
KTKGTVCRQSFDDCDLPDMCNGQSPICSNLHKEDGTACIYSGKCRGGKCK
SRTVQCERIFGKGTMNGPYTCYTRINKVGKDFGNCGNKGSVYKACSQADA
ECGKLQCKSPTVNVMPISX
Run BLAST on NCBI

transcript from alignment at scaffold_213:389056..394483-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052344 ID=TCONS_00052344|Name=TCONS_00052344|organism=Clytia hemisphaerica|type=transcript|length=5428bp|location=Sequence derived from alignment at scaffold_213:389056..394483- (Clytia hemisphaerica)
TTGCATTTGGCTTTTGGAAGTTGTGGAATTTATAAAATCAAAAGAAAACT
TTCTACTTTTTGCTGCAACAACTTATCTCGGATGGACAAGCAAATATAAC
TAAATATCCATATTTTTACAATGGTCAAGCCAGCATACCAACTTTTGTTT
ATCACTTTGGTGGCTTCCATAATCGGGAATCAATGGACCACTGCTGCTAC
GATAGGTTTATACCATGGTACCATTGGATACAAACAGAATAGATGCTTGC
ATATTCATAACCGTACCCAACACTTGGTTCATGCTACCCTTGAATCGAAC
ACTATAAATGAAACGTTGTTTTTTGTTGAAGCGACTGGCCACTCGAAGAC
TAATCCTAAGCGTAAGTTTCGGAATAAAGCACGACAAAATTCATATCTTT
CTCCACGATTCTTCTTTGGATTAGCTAACGAACGAATCGATGCTGAAATG
AGTTTAATCCCGGACAAAAATCACGGTGGATTTCTCATCTCTTTAACTTG
TCGGCATAGATTTGCTAAAAAACGAGTTTTGGTCGTTTTTGAAGCNATTT
CATCTATTTAACTTGTCGGCATAGATTTGCTAAAAAACGAGTTTTGGTCG
TTTTTGAAGCAGCGGTTGAATCTTATCATTCACCCGAAAACTGCTTATAT
CCTGTCACAAAACAAACAGAATTTACAATAGGTCGTTCCAAAACAACTGA
CCGCACTCATCCCGTTTCTATCAAAGGAAGCCGTAGAGACTCAACCATAA
AAGATACTAACCCATCTCTGGACTTGGATTTTGACCGTGAGAAACACCAA
GGACAAAATACCGATTCAGCAAATCCAAAATTTATTAAAGAATTTAAGAC
GGGAAAAACAATGCAACGAAAACGCAGAGAAACATCGGAGAGAGACGATT
CAAAGTTATACAGACCACGCCGGAATGTGAACTTGGAACCAGAGACTAGA
GGACCATTTTATATCAAGCTTTTTATTCTTATGGATACCAAGTTATATGA
CATGTACGATGGCAAAAGGGATGACAAAGTATTCAAAGCAAGGATACAAA
AGATAGTTGACTACGCAAATACTGTTTACAGAAAATACAACATCCGCATG
TCAATAGCCAAGTTTTTAGATCCACCAAATGACCACCAAGTACAATTCAC
CTCAAATTCAGGAGATTACCTTTCGCGCATCTCATTACACTTTGCAAGTA
CACGGAAAAATAAGTCATTCAAAGAAATAGATCACCTCCACTTTTTCACT
GGTCACCATTTTGATGATGGTAAGTTCATTCATTCAATCTATTTACATGC
TTTTTCTAAGAACAACTTCTAAGAACAGGTAAGCTTGAAGGTCTATTTCG
GCCGGAGCCCTACAACAAATCTAAAATGACCCTGTATATTTCAAAAATAG
CCAAGCGTCTTCAATTTTAAGCTTTTTAAGTCTACCACTGAATAAAGTAA
GCATAAAAATTACATTTTCAGAGAATTAAAGCCTGGAAATCGGCAAATAA
GAACAAAGCCTCAACCAAAATTTAATGTTTCTTATACAGAAGCGTGTTAT
ACAGCATAGAGCTTTCTATACCATGTGAAGTCAAAGAATGAAAGACAGTC
TTTGGGATTTTAAGGAAGTACATAATCAGAAAGTATATACCAGGTGTAAT
AAATATTCTAAAAAAAGTCTAAAATAATACTTATATGTCCGATTAAGTAT
GAAAAAGCAGTTTACACAATTTTTAACCATAAAAAAACGAAGAACTAACC
ATTGACTTCCAAGCCCGAAGGGCTGGACTCGAGATTCCTGGATGGGAAAT
GAAGCCACTTATTTCCCATCCAGAACGTCAGTGCATAGTTTTTACACAAA
CGCCAGATTGAAAGCAAAATTCGTCACTAGATTTAAAAAAAATACATTCC
TCAAAAACAAAGGAACCACTAGCTACAATCGGTCGTCATGATTAAGGTGC
GTTTTTGGATGTTTTAACAACTTCGGCCAAGATTTTTGATGCGTATTTAA
CGAACGAACTCACAAAATAAGTTTACATATTTAATCTCAATATTCAATCT
AAAGAAATTACACCAACCCAAAGTCCCGAGGTCCCAAAGTCCCAAAATAT
CAAATTTTTGATTAAAAATTACACTAATATCTGAAGTCCCGAATTGAAAT
ATATCAAAACTCTACCAGAAAAAAAAATTAAACCAAACTAAAGTCCCGAA
GTCCTGAATTGAAATATATCAAATTTCTGAGGAAATAAATCACGCCAACC
CAAAGTTCCGAAATATTAAATTTCTGAAAAAAAATATTACACCAGAACAT
TGACGTATAATGTCTTTAAAAATATTTACTTGTGATAGTTGTTAGTTACA
TGAAGGTATTGCGTGGATGAAGAGGTGGGTTGGGCGTTCAAAAAAAAAAG
CGAAGTAGAGCTAATGGATAAAACAGACAAGGGTGTGATTTTCACAAAGA
GAAGGGGTGGAAATATATGAAAAGGTGTGAAGTGAAACTCAAGTAGAAAG
AGGGCCGGAGGAAATGACTGATTGATTGAATTTGATGGGCAGGGATGAGA
TTGATGAATTCTCGGATAAATAAACAAGGGTGTAATTTGAAACTCATGTG
GAAAGAGGGACAGGTTTAGTGAATGATAGATTGAACACAAGGAGACAGGG
ATGAAATTGATGACAAAAACAAGGGTGTGATTTTCACACAAAGAACGAGT
GGAAATCTCTATCAAAAGGGGTGGGGTGAAAGAGGAGCAGAGTGATGAAT
GATAGATTGAACACAGTGGGAGAGGGGTGAGATTATGAAATGGAGCAAAG
ACACAAAGAGGAAAACTATTGGCATAAAACTCAAGTAAAAAGACAGAGGT
ATACACGAAGACAGGGGTGAGATAGATGCAAAGAAAGGGGGAGATAGGGG
TGGGACAGATGTAAAGGGATGTGGCGGAGATATTACAAAAGGAGTAGGGG
TAAAAACAACTTAAATAAGACGAGACGGGGTGAATAGATTTCTCTCTCAG
AAATTTGATATATTTCAATTAGGCGAGACCAATTTAATTTGTTGTTCTAC
GGACAGATCGTTAGAAAAATATGGGTCGGTCGGTCGGCAGAATAAGAATA
ATTTTTTCATTTATCAGGGCTGGTAAGGTACCGAGAAAGTAAGACAACAA
ATGTCAATACAGTGCTTATGGACATAAGTCAATGTATATTTCAATTTGTT
AAAATTTTTTTTTTTAAACACACTACCGCCAGTTTCATGCTTTTAATGCG
ACTATCAGGTATAAAATTCCTCTGTACAAGATGGTATAAATACTTATTCT
ATAAAAAAGTAAAAATGTAAAAAGTTCAAAAAAAGTGATTAAAAATGCTC
TTGGGAGATACAAAACAATAAAAAGGTAAAATTACGGTAGTTATTAGTCT
GGAGGGGTCAGAGCCCTTGAAGGGACATAAAAGTAGTAAAATGTAAACAT
TGCGCGAACCACGGGTCATTAAAGAGAACAATTAAAATCACGTGTCCAAA
ACAAACTTTTAAACAATTGAACAATCAAAATTAGCTATATTTGGGTTGAT
TTTTTATTTTGCCATGTGACATTTAATTTGATTTGGTATCCGCACAATTT
GTTTACAAATTTCGCAAGTAGTGTTACGTCCCTTTAAAACAAATTTTCAG
TCGATGATGGCTTTATATCCTTGGTCGTGTTCACACTACAGACCTTCCTT
AATAAAAATGTAGTTAGGAGAATCTTTTGTTGACTACAATACAGAACGTG
CATTTAACAAAGAGTCGAACGCGTAGTATTGTAATTTTTAATCGATCTTC
CTTAATTAAGAGTCGTAAGCTCTATGTATTGTCTTAAGGGTAGGGTAGAG
GCTTGCTTCCCTTAAAACAAAAGATTTTATCAAGGAAGCATAAACAAAGA
ATGCGCGCAGTGAACAAAAAGTTTTAAGATTTCAAAAACGAATGAACTGA
GGAAAAAATTAGAAATAGTGCAAACGGTGTTGTTGATGTGTAAGATGAAT
GCAGTTAATGAGTAAAACCATTAGAACAATTATGTTTGCGGGTTTTAAGT
GATGTATGGATACCAATATCAACCAATCACAGGTGAAATCGAAACTCTCA
ATAAAAAATCAACCAATGAGAAGCATTAAGCAAAATCAATTACCGTGTTA
TAATAGATCTCGTGAACCTACAAAGAACTGTAATAAACCAGTGTATTCAT
CCATCATAAATCTCTTTGTTTAACTTTGATAGATTTAATTAAGGAAACCT
TCCAGTGTGAACGCGCCCCTTATTTCTATTTTCCTTCAGATGTAATTGGG
AAAGCGTACTATCGATCAATGTGTGCACCCTCCACCTCAGTGAGCTTTTC
ATCTGACTCGCCACATTGGGACGTGCAACGGACGGCCTCTATTTTTGTGC
ACGAGATAGGTCACAGTCTTGGTATGGTTCATGATGACCCTACCAATTGT
GTTTGCAAACATTCTAGAGGTTGCATCATGGCTTCATATATTGTAACACC
GGCGCCAAGATATTTTTCGGATTGTAGCGAAGAGGGACTTTTTAAGTAAG
TATATGATGAAGTTGGTATTTGTAGACATTAAAGATTAGGGAAAAGTATA
TTGTGAAACTTGAGCGGCTTATGATTTTACTGTGGGTAGCTAAATCAGAT
TGATGTTATTAAAGCCATCTCTATAAAAGAGATAAATAGATACAGTTTTC
TTGCTGATATATAATGTTTTGAATCTTTTTCGATATTGTCATTATTCACA
CTCTAATTCACATTTCAAAATTTCCGTCAATTATTGATATTTTATGGGTT
TTGATAATGTACTATAATGGCTTGATTTATTTTCAGGTATCTGGACTCAT
GGAGAAGTCAATGCCTTCGGGGAGATGGTTCTCCTGTTCCAGAAGAACGA
TTAGTACCCAGGCCCAAGCCGGTGTGCGGAGACGGGAAATTAGATAAAAA
TGAAGAATGTGACTGTGGAATCCCAGGTTTTTGTATGAATCCATGCTGTA
ACCCTTACACGTGCAAACTAACCAAAGGCTCGGAATGCTATGAGGGTGGA
TGCTGTAAGCACTGCAAGTTGAAGACAAAAGGTACCGTTTGCCGACAATC
CTTTGATGACTGTGATCTTCCCGATATGTGCAACGGTCAATCGCCAATTT
GTTCCAACCTTCACAAGGAAGATGGAACTGCGTGTATTTACAGTGGAAAA
TGTCGTGGAGGAAAATGTAAATCAAGGACAGTACAATGCGAACGTATTTT
CGGTAAAGGTACCATGAACGGACCTTACACTTGTTATACTCGTATCAATA
AAGTTGGTAAAGATTTTGGTAATTGCGGTAACAAAGGATCAGTATATAAA
GCGTGTTCGCAGGCAGATGCTGAATGTGGCAAACTACAGTGTAAATCACC
AACTGTCAATGTAATGCCGATAAGTGGN

Coding sequence (CDS) from alignment at scaffold_213:389056..394483-

>TCONS_00052344 ID=TCONS_00052344|Name=TCONS_00052344|organism=Clytia hemisphaerica|type=CDS|length=3771bp|location=Sequence derived from alignment at scaffold_213:389056..394483- (Clytia hemisphaerica)
GTATCTGGACTCATGGAGAAGTCAATGCCTTCGGGGAGATGGTTCTCCTG
TTCCAGAAGAACGATTAGTACCCAGGCCCAAGCCGGTGTGCGGAGACGGG
AAATTAGATAAAAATGAAGAATGTGACTGTGGAATCCCAGGTTTTTGTAT
GAATCCATGCTGTAACCCTTACACGTGCAAACTAACCAAAGGCTCGGAAT
GCTATGAGGGTGGATGCTGTAAGCACTGCAAGTTGAAGACAAAAGGTACC
GTTTGCCGACAATCCTTTGATGACTGTGATCTTCCCGATATGTGCAACGG
TCAATCGCCAATTTGTTCCAACCTTCACAAGGAAGATGGAACTGCGTGTA
TTTACAGTGGAAAATGTCGTGGAGGAAAATGTAAATCAAGGACAGTACAA
TGCGAACGTATTTTCGGTAAAGGTACCATGAACGGACCTTACACTTGTTA
TACTCGTATCAATAAAGTTGGTAAAGATTTTGGTAATTGCGGTAACAAAG
GATCAGTATATAAAGCGTGTTCGCAGGCAGATGCTGAATGTGGCAAACTA
CAGTGTAAATCACCAACTGTCAATGTAATGCCGATAAGTGGNATGTAATT
GGGAAAGCGTACTATCGATCAATGTGTGCACCCTCCACCTCAGTGAGCTT
TTCATCTGACTCGCCACATTGGGACGTGCAACGGACGGCCTCTATTTTTG
TGCACGAGATAGGTCACAGTCTTGGTATGGTTCATGATGACCCTACCAAT
TGTGTTTGCAAACATTCTAGAGGTTGCATCATGGCTTCATATATTGTAAC
ACCGGCGCCAAGATATTTTTCGGATTGTAGCGAAGAGGGACTTTTTAAAT
GCAACGAAAACGCAGAGAAACATCGGAGAGAGACGATTCAAAGTTATACA
GACCACGCCGGAATGTGAACTTGGAACCAGAGACTAGAGGACCATTTTAT
ATCAAGCTTTTTATTCTTATGGATACCAAGTTATATGACATGTACGATGG
CAAAAGGGATGACAAAGTATTCAAAGCAAGGATACAAAAGATAGTTGACT
ACGCAAATACTGTTTACAGAAAATACAACATCCGCATGTCAATAGCCAAG
TTTTTAGATCCACCAAATGACCACCAAGTACAATTCACCTCAAATTCAGG
AGATTACCTTTCGCGCATCTCATTACACTTTGCAAGTACACGGAAAAATA
AGTCATTCAAAGAAATAGATCACCTCCACTTTTTCACTGGTCACCATTTT
GATGATGGTATCTGGACTCATGGAGAAGTCAATGCCTTCGGGGAGATGGT
TCTCCTGTTCCAGAAGAACGATTAGTACCCAGGCCCAAGCCGGTGTGCGG
AGACGGGAAATTAGATAAAAATGAAGAATGTGACTGTGGAATCCCAGGTT
TTTGTATGAATCCATGCTGTAACCCTTACACGTGCAAACTAACCAAAGGC
TCGGAATGCTATGAGGGTGGATGCTGTAAGCACTGCAAGTTGAAGACAAA
AGGTACCGTTTGCCGACAATCCTTTGATGACTGTGATCTTCCCGATATGT
GCAACGGTCAATCGCCAATTTGTTCCAACCTTCACAAGGAAGATGGAACT
GCGTGTATTTACAGTGGAAAATGTCGTGGAGGAAAATGTAAATCAAGGAC
AGTACAATGCGAACGTATTTTCGGTAAAGGTACCATGAACGGACCTTACA
CTTGTTATACTCGTATCAATAAAGTTGGTAAAGATTTTGGTAATTGCGGT
AACAAAGGATCAGTATATAAAGCGTGTTCGCAGGCAGATGCTGAATGTGG
CAAACTACAGTGTAAATCACCAACTGTCAATGTAATGCCGATAAGTGGNA
TGTAATTGGGAAAGCGTACTATCGATCAATGTGTGCACCCTCCACCTCAG
TGAGCTTTTCATCTGACTCGCCACATTGGGACGTGCAACGGACGGCCTCT
ATTTTTGTGCACGAGATAGGTCACAGTCTTGGTATGGTTCATGATGACCC
TACCAATTGTGTTTGCAAACATTCTAGAGGTTGCATCATGGCTTCATATA
TTGTAACACCGGCGCCAAGATATTTTTCGGATTGTAGCGAAGAGGGACTT
TTTAAATGCAACGAAAACGCAGAGAAACATCGGAGAGAGACGATTCAAAG
TTATACAGACCACGCCGGAATGTGAACTTGGAACCAGAGACTAGAGGACC
ATTTTATATCAAGCTTTTTATTCTTATGGATACCAAGTTATATGACATGT
ACGATGGCAAAAGGGATGACAAAGTATTCAAAGCAAGGATACAAAAGATA
GTTGACTACGCAAATACTGTTTACAGAAAATACAACATCCGCATGTCAAT
AGCCAAGTTTTTAGATCCACCAAATGACCACCAAGTACAATTCACCTCAA
ATTCAGGAGATTACCTTTCGCGCATCTCATTACACTTTGCAAGTACACGG
AAAAATAAGTCATTCAAAGAAATAGATCACCTCCACTTTTTCACTGGTCA
CCATTTTGATGATGGTATCTGGACTCATGGAGAAGTCAATGCCTTCGGGG
AGATGGTTCTCCTGTTCCAGAAGAACGATTAGTACCCAGGCCCAAGCCGG
TGTGCGGAGACGGGAAATTAGATAAAAATGAAGAATGTGACTGTGGAATC
CCAGGTTTTTGTATGAATCCATGCTGTAACCCTTACACGTGCAAACTAAC
CAAAGGCTCGGAATGCTATGAGGGTGGATGCTGTAAGCACTGCAAGTTGA
AGACAAAAGGTACCGTTTGCCGACAATCCTTTGATGACTGTGATCTTCCC
GATATGTGCAACGGTCAATCGCCAATTTGTTCCAACCTTCACAAGGAAGA
TGGAACTGCGTGTATTTACAGTGGAAAATGTCGTGGAGGAAAATGTAAAT
CAAGGACAGTACAATGCGAACGTATTTTCGGTAAAGGTACCATGAACGGA
CCTTACACTTGTTATACTCGTATCAATAAAGTTGGTAAAGATTTTGGTAA
TTGCGGTAACAAAGGATCAGTATATAAAGCGTGTTCGCAGGCAGATGCTG
AATGTGGCAAACTACAGTGTAAATCACCAACTGTCAATGTAATGCCGATA
AGTGGNATGTAATTGGGAAAGCGTACTATCGATCAATGTGTGCACCCTCC
ACCTCAGTGAGCTTTTCATCTGACTCGCCACATTGGGACGTGCAACGGAC
GGCCTCTATTTTTGTGCACGAGATAGGTCACAGTCTTGGTATGGTTCATG
ATGACCCTACCAATTGTGTTTGCAAACATTCTAGAGGTTGCATCATGGCT
TCATATATTGTAACACCGGCGCCAAGATATTTTTCGGATTGTAGCGAAGA
GGGACTTTTTAAATGCAACGAAAACGCAGAGAAACATCGGAGAGAGACGA
TTCAAAGTTATACAGACCACGCCGGAATGTGAACTTGGAACCAGAGACTA
GAGGACCATTTTATATCAAGCTTTTTATTCTTATGGATACCAAGTTATAT
GACATGTACGATGGCAAAAGGGATGACAAAGTATTCAAAGCAAGGATACA
AAAGATAGTTGACTACGCAAATACTGTTTACAGAAAATACAACATCCGCA
TGTCAATAGCCAAGTTTTTAGATCCACCAAATGACCACCAAGTACAATTC
ACCTCAAATTCAGGAGATTACCTTTCGCGCATCTCATTACACTTTGCAAG
TACACGGAAAAATAAGTCATTCAAAGAAATAGATCACCTCCACTTTTTCA
CTGGTCACCATTTTGATGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033095XLOC_033095Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052344-proteinTCONS_00052344-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052344-exon-scaffold_213-1575043694:393215..394483TCONS_00052344-exon-scaffold_213-1575043694:393215..394483Clytia hemisphaericaexon
TCONS_00052344-exon-scaffold_213-1575043694:389939..390194TCONS_00052344-exon-scaffold_213-1575043694:389939..390194Clytia hemisphaericaexon
TCONS_00052344-exon-scaffold_213-1575043694:389056..389647TCONS_00052344-exon-scaffold_213-1575043694:389056..389647Clytia hemisphaericaexon
TCONS_00052344-exon-scaffold_213-1510915933:393215..394483TCONS_00052344-exon-scaffold_213-1510915933:393215..394483Clytia hemisphaericaexon
TCONS_00052344-exon-scaffold_213-1510915933:389939..390194TCONS_00052344-exon-scaffold_213-1510915933:389939..390194Clytia hemisphaericaexon
TCONS_00052344-exon-scaffold_213-1510915933:389056..389647TCONS_00052344-exon-scaffold_213-1510915933:389056..389647Clytia hemisphaericaexon
TCONS_00052344-exon-scaffold_213-1491911889:393215..394483TCONS_00052344-exon-scaffold_213-1491911889:393215..394483Clytia hemisphaericaexon
TCONS_00052344-exon-scaffold_213-1491911889:389939..390194TCONS_00052344-exon-scaffold_213-1491911889:389939..390194Clytia hemisphaericaexon
TCONS_00052344-exon-scaffold_213-1491911889:389056..389647TCONS_00052344-exon-scaffold_213-1491911889:389056..389647Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:389056..394483 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0185942	0.0543968	0.0631599	0.0411948	2.33201	1.3276	0.262964	0.201423	0.0470069	0.252311	0.131869	0.0990691	0.123664	0.0770559	0	0	0.19542	0.143071	0.0790642	0.103419	0.395515	0.368298	0.127918	0.348889	0.658805	0.962128	0.0509927	0	0.0206381	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001762Disintegrin_dom
IPR006586ADAM_Cys-rich
IPR001590Peptidase_M12B
IPR024079MetalloPept_cat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004222metalloendopeptidase activity
GO:0008237metallopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
Blast
[Close]
BLAST of TCONS_00052344 vs. Swiss-Prot (Human)
Match: ADAM9 (Disintegrin and metalloproteinase domain-containing protein 9 OS=Homo sapiens GN=ADAM9 PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 1.534e-55
Identity = 141/437 (32.27%), Postives = 212/437 (48.51%), Query Frame = 3 
Query:  843 FKTGKTMQRKRRETSERDD------SKLYRPRRNVNLEPETRGPFYIKLFILMDTKLYDMYDGKRDDKVFKARIQKIVDYANTVYRKYNIRMSIAKFLDPPNDHQVQFTSNSGDYLSRISLH---FASTRKNKSFKEIDHLHFFTGHHFDDDVIGKAYYRSMCAPXXXXXXXXXXPHWDVQRTASIFVHEIGHSLGMVHDDPTNCVCKHSRGCIMASYIVTPAPRYFSDCSEEGLFKYLDSWRSQCLRGDGSPVPEERLVPRPKPVCGDGKLDKNEECDCGIPGFC-MNPCCNPYTCKLTKGSECYEGGCCKHCKLKTKGTVCRQSFDDCDLPDMCNGQSPICS-NLHKEDGTACIYS-GKCRGGKCKSRTVQCERIFGKGTMNGPYTCYTRINKVGKDFGNCGNKGSVYKACSQADAECGKLQCKSPTVNVMPISG 2117
             K G + +   +ET++ ++      ++L R RR V   P+TR   Y++LFI++D + YDM    R+    +  +  + +Y +++Y   NIR+ +       N + +     +GD L         F  TR+     ++     F G        G A+  ++C+  +     +      V+  ASI  HE+GH+LGM HDD  +C C  ++ CIM S       R FS CS E   K   +    CL     P P+E       P CG+  +D  EECDCG P  C ++PCC   TCKL   +EC  G CCK C+    GT+CR    +CD+P+ CNG S  C  ++  ++G  C  +   C  G C+    QC+ IFG      P  C+  +N  G  FGNCG  G+ YK C+  +A CGKLQC++  V  +P+ G
Sbjct:  173 LKCGVSNKDIEKETAKDEEEEPPSMTQLLRRRRAV--LPQTR---YVELFIVVDKERYDMMG--RNQTAVREEMILLANYLDSMYIMLNIRIVLVGLEIWTNGNLINIVGGAGDVLGNFVQWREKFLITRRRHDSAQLVLKKGFGG------TAGMAFVGTVCS-RSHAGGINVFGQITVETFASIVAHELGHNLGMNHDDGRDCSCG-AKSCIMNSG--ASGSRNFSSCSAEDFEKLTLNKGGNCLLN--IPKPDEAY---SAPSCGNKLVDAGEECDCGTPKECELDPCCEGSTCKLKSFAECAYGDCCKDCRFLPGGTLCRGKTSECDVPEYCNGSSQFCQPDVFIQNGYPCQNNKAYCYNGMCQYYDAQCQVIFGSKAKAAPKDCFIEVNSKGDRFGNCGFSGNEYKKCATGNALCGKLQCEN--VQEIPVFG 585
The following BLAST results are available for this feature:
BLAST of TCONS_00052344 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ADAM91.534e-5532.27Disintegrin and metalloproteinase domain-containin... [more]
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