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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052350 ID=TCONS_00052350|Name=TCONS_00052350|organism=Clytia hemisphaerica|type=transcript|length=881bp AGGTCTTGGAAGAATCACTAACTTACAAAAAGAAATGTGAGGAACTCCTT CGAACTGAAGCTGAATTACGTGCTCAGTTAGCACTATATACAGAGAAGTT TGAGGAGTTCCAAACGACACTGACGAAAAGTAACGAAGTGTTTGCCACCT TCAAAAAAGATATGGATACGATGACAAAGACCATTCGGAAATTGGAAAAA GAGTCAAATATGTGGAAGAACAGATGGGAAAATACGAACCACTCACTTCT TCAGATGGTCGATGAGCGCACTCAAAATCAACAAACTATAAGCAGTCAAA AgaccaaaatcgaaaaattggaaaGACTTTGTCGCGCACTGCAAGTCGAA AGGAAATCTCTTAGACAACAGTTGGACGAACATAAGCCGGTTGATAACGG GCTGGCAACAGATAGTCCAGACCAGTCACTTGATGTGAGTGATCCGTCGG TCAGCAGTACAACTCCTTCGCCCACACCTGAGACAACAGCTCTTCCTGAT ACGAACGCTGAGCGGGCTGTCTCTGACGAAAAACCAAAGAGCGAGGAGAC TGAAAGCGAAACGACAGACGAAACAAACAACGAATGAGCGATGGGAATTC TTTTCTCCGTTTGACCCAGAACTTTGCTGTTATATTATTCAAACATTTTT GTTGTGCGCGTGTGAATTTTTGTGTgctgatctttttttttctgcTTCAC CCCATTGACTATAAAATTGTATCGTACGTTTTTacataaagaattttttt gtccatttttagtACCACgagaaaataagaaaacttaaaaaagttttaat gaaAACTGTTCGttatagtgaggtctgttagcacataaaaacgtaagaat acttcagatggtgataaaagcatgaaatttg Run BLAST on NCBI protein sequence of TCONS_00052350-protein >TCONS_00052350-protein ID=TCONS_00052350-protein|Name=TCONS_00052350-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
VLEESLTYKKKCEELLRTEAELRAQLALYTEKFEEFQTTLTKSNEVFATF KKDMDTMTKTIRKLEKESNMWKNRWENTNHSLLQMVDERTQNQQTISSQK TKIEKLERLCRALQVERKSLRQQLDEHKPVDNGLATDSPDQSLDVSDPSV SSTTPSPTPETTALPDTNAERAVSDEKPKSEETESETTDETNNE Run BLAST on NCBI transcript from alignment at scaffold_213:540625..544207- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052350 ID=TCONS_00052350|Name=TCONS_00052350|organism=Clytia hemisphaerica|type=transcript|length=3583bp|location=Sequence derived from alignment at scaffold_213:540625..544207- (Clytia hemisphaerica) AGGTCTTGGAAGAATCACTAACTTACAAAAAGAAATGTGAGGAACTCCTT
CGAACTGAAGCTGAATTACGTGCTCAGGTAAGTTCGGAAATAAACGCTTT
CACATCAAAATTGTACTTGTTGTATTAAGCTCACTCTGTACCCTGTACTC
ACGTGTATCGCTTCGTAGTACACTCTATGCGCATTGTCTGTTTGATAACA
AATTCCCGTACGGAGACCTCTGCGATTAAGTATGATTTTAGAGAACAACA
CTTCTCTCGTCGTCTCCCTTCTCTCGCCAACACTCCATCAATCGTAGATA
CTAGGTCTGTGTAAAGACAATATTAAGCGTAGCATTCGAAGGGATAAGAA
AACATTTACTTTGGAGTAATGGATAGGGCTGGACTTGTTGGTTTGCCGTC
ACCTGACCGACACTACATCGAAATCTGCCGACCCCAAAAATGTTTTGACA
TACGGCAAGCCAACATTTTGTTATGGTCAGCCTAGAATGATTTACCGATA
TACAGCCAAGAATCCATCGATGTCTCAAGATCAAGAATTTATGTTATTGC
TGCAACACCTAGGTGTTGGAATTAATCTTGTGTGTAATTTTCCACTTCAG
TTAGCACTATATACAGAGAAGTTTGAGGAGTTCCAAACGACACTGACGAA
AAGTAACGAAGTGTTTGCCACCTTCAAAAAAGATATGGATACGGTAAGGA
GATTGGCTGAAACGTCATGTCATCCATTTCAGTTTTTTATTATTCAACCT
TGACCTCGATTTGGGTAGTAAGCCGTCCCTTCTGAATGGACTACTTACCA
TGTCGGCTTTTGACATCTCGTAAAGAATTTGGGTTCTTGAGACTTTTTCA
AGACCAAAATGTACTGAAGCCTGATTTTCAAAGAATGAATACTGAACAGT
TAGTATAAGTTGATTACGGATAGAAAAAAGATCTGCCTTGTTGCAATTAT
CCATTCCATTTGGTTCTTTCACATTAGATGACAAAGACCATTCGGAAATT
GGAAAAAGAGTCAAATATGTGGAAGAACAGATGGGAAAATACGAACCACT
CACTTCTTCAGATGGTCGATGAGGTAACGTTGCACTACTTTTTAACTAAG
AGGAGATAGTTAAAACATGGAGTACTTTCATTCTCAACTTAAGTTGAGGT
AGAATCTGAGGATGTCTGTATGTCACCTCAAAACCCTGGGACAGGCTAGA
GACTTCAGAAATAGTCCGATTGAATTGACATTTTGCACACCAGTTCTTTG
GGAGAATATCTGGCGGGGTTTTTTTTTCATTTTTTGAAAATTTTGATTTT
TAGGTGCGTGGTCACAATTTTTAGCACCAAAACAAGGCTAAAATTGTAGG
GCAGGCTACAGACTTCAAAAATGGTTCGATTTGGTTGAATTTGGTTACTT
TTTTATCAATTTTACAATTGGGCCTACATTTGATTTGAAAAGACTGAAGT
TGAGCCCAGTGTATGTTAGCACGTTCGACAGTGGGGATCTTCCAGAAAAG
ATTCATGGGGATAGAGGATGACTATCAAAATTATTGACACTCGGAAAGAA
AACTTTAGTCTTTAGACTGTTTCAACGTGGTTCAAACCGTTCAAATAGGT
TCGTTTTACTTTTAAGGAGTTCTACATTCAATTCAATTATATTTCTCTTT
ACAGCGCACTCAAAATCAACAAACTATAAGCAGTCAAAAGACCAAAATCG
AAAAATTGGAAAGACTTTGTCGCGCACTGCAAGTCGAAAGGAAATCTCTT
AGACAACAGTTGGACGAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGCGTTT
ATTTGGAACCTAAGAGTATTGACACTCGGAAAGAAAACTTTAGTCTTTAG
ACTATTTCAACGGGGTTCAAGACCGTTCAAATAGGTTCGTTTTACTTTTA
AGGAGTTCTACATTCAATTCGATTATATTTCTCTTTACAGCGCACTCAAA
ATCAACAAACTATAAGCAGTCAAAAGACCAAAATCGAAAAATTGGAAAGA
CTTTGTCGCGCACTGCAAGTCGAAAGGAAATCTCTTAGACAACAGTTGGA
CGAACATAAGGTACAATGTACTTACTGTTGGATTCTTTCTCATTATTAAG
GGTACTAACCCTGATTTTCAAGAAAAATTTCTGTCTAAGGTACCGCCACC
TCCTTTTTAGTACCTGGTACTAACTTCTATTTAGGGAAAAAGGGACTCCC
GCCTACGATATTGAGGCTGGTTACCAAGAAAAATATGGGCTACATTACCC
TGGAAAAAAATGCCTTGTAGTGCCTAGCAGTCAGTTTCAGTGCTAAAAAT
CAGGAAAGTTTTCTGCGACAGTTCGAATTTTCAAAATTAGAAAATCAATT
CCGTTAAATGAAATCAATTTTTTTTCTGAAACTTTCCATGACCAAAATCT
TTACCCATTCTTTTACCCATCAAGTGATTAATTTTCTGAAACTTTTAAAT
TTCCATTATTTCCTTTTCAATTTCGACAACCCGTAAAGGTGCTACAATCG
AGGTCGAACATATTGAGATCTTCGGAAATTTTGACATTTTTTAGAATTTA
TATGCGTGCGTGCACTTTAACTTATGATCGTTGTATTTATCAAATTTCGA
GAGGTTTTATTGGCTTTCAAGCCATATTTCAGCCGTATCAGAACATTTTT
TGAGATCCTAAGGTCCTAAGTCTTAAATAAATCTAATGCTAAAAGTCACA
GTTAAACTCTACATTCCATAAGTAAGTTAGAGCACTAAAAAACCATTTGT
GTTTTTCAAAATGTTGCAGGAAATTCCCCTTTTTCTCAAATATTATGACC
ATGATTGTAGAATAAGTCAATGAATGTACGATTTTTTCCTTTTTTTTCTC
GATTTTTTTGCTTTTTTTGCAGCCGGTTGATAACGGGCTGGCAACAGATA
GTCCAGACCAGTCACTTGATGTGAGTGATCCGTCGGTCAGCAGTACAACT
CCTTCGCCCACACCTGAGACAACAGCTCTTCCTGATACGAACGCTGAGCG
GGCTGTCTCTGACGAAAAACCAAAGAGCGAGGAGACTGAAAGCGAAACGA
CAGACGAAANCGAGCAGGCTGTCTCTGACGAAAAACCAAAGAGCGAGGAG
ACTGAAAGCGAAACGACAGACGAAACAAACAACGAATGAGCGATGGGAAT
TCTTTTCTCCGTTTGACCCAGAACTTTGCTGTTATATTATTCAAACATTT
TTGTTGTGCGCGTGTGAATTTTTGTGTGCTGATCTTTTTTTTTCTGCTTC
ACCCCATTGACTATAAAATTGTATCGTACGTTTTTACATAAAGAATTTTT
TTGTCCATTTTTAGTACCACGAGAAAATAAGAAAACTTAAAAAAGTTTTA
ATGAAAACTGTTCGTTATAGTGAGGTCTGTTAGCACATAAAAACGTAAGA
ATACTTCAGATGGTGATAAAAGCATGAAATTTG Coding sequence (CDS) from alignment at scaffold_213:540625..544207- >TCONS_00052350 ID=TCONS_00052350|Name=TCONS_00052350|organism=Clytia hemisphaerica|type=CDS|length=3510bp|location=Sequence derived from alignment at scaffold_213:540625..544207- (Clytia hemisphaerica) GCTGTCTCTGACGAAAAACCAAAGAGCGAGGAGACTGAAAGCGAAACGAC AGACGAAACAAACAACGAATGACCGGTTGATAACGGGCTGGCAACAGATA GTCCAGACCAGTCACTTGATGTGAGTGATCCGTCGGTCAGCAGTACAACT CCTTCGCCCACACCTGAGACAACAGCTCTTCCTGATACGAACGCTGAGCG GCGCACTCAAAATCAACAAACTATAAGCAGTCAAAAGACCAAAATCGAAA AATTGGAAAGACTTTGTCGCGCACTGCAAGTCGAAAGGAAATCTCTTAGA CAACAGTTGGACGAACATAAGATGACAAAGACCATTCGGAAATTGGAAAA AGAGTCAAATATGTGGAAGAACAGATGGGAAAATACGAACCACTCACTTC TTCAGATGGTCGATGAGTTAGCACTATATACAGAGAAGTTTGAGGAGTTC CAAACGACACTGACGAAAAGTAACGAAGTGTTTGCCACCTTCAAAAAAGA TATGGATACGGTCTTGGAAGAATCACTAACTTACAAAAAGAAATGTGAGG AACTCCTTCGAACTGAAGCTGAATTACGTGCTCAGGCTGTCTCTGACGAA AAACCAAAGAGCGAGGAGACTGAAAGCGAAACGACAGACGAAACAAACAA CGAATGACCGGTTGATAACGGGCTGGCAACAGATAGTCCAGACCAGTCAC TTGATGTGAGTGATCCGTCGGTCAGCAGTACAACTCCTTCGCCCACACCT GAGACAACAGCTCTTCCTGATACGAACGCTGAGCGGCGCACTCAAAATCA ACAAACTATAAGCAGTCAAAAGACCAAAATCGAAAAATTGGAAAGACTTT GTCGCGCACTGCAAGTCGAAAGGAAATCTCTTAGACAACAGTTGGACGAA CATAAGATGACAAAGACCATTCGGAAATTGGAAAAAGAGTCAAATATGTG GAAGAACAGATGGGAAAATACGAACCACTCACTTCTTCAGATGGTCGATG AGTTAGCACTATATACAGAGAAGTTTGAGGAGTTCCAAACGACACTGACG AAAAGTAACGAAGTGTTTGCCACCTTCAAAAAAGATATGGATACGGTCTT GGAAGAATCACTAACTTACAAAAAGAAATGTGAGGAACTCCTTCGAACTG AAGCTGAATTACGTGCTCAGGCTGTCTCTGACGAAAAACCAAAGAGCGAG GAGACTGAAAGCGAAACGACAGACGAAACAAACAACGAATGACCGGTTGA TAACGGGCTGGCAACAGATAGTCCAGACCAGTCACTTGATGTGAGTGATC CGTCGGTCAGCAGTACAACTCCTTCGCCCACACCTGAGACAACAGCTCTT CCTGATACGAACGCTGAGCGGCGCACTCAAAATCAACAAACTATAAGCAG TCAAAAGACCAAAATCGAAAAATTGGAAAGACTTTGTCGCGCACTGCAAG TCGAAAGGAAATCTCTTAGACAACAGTTGGACGAACATAAGATGACAAAG ACCATTCGGAAATTGGAAAAAGAGTCAAATATGTGGAAGAACAGATGGGA AAATACGAACCACTCACTTCTTCAGATGGTCGATGAGTTAGCACTATATA CAGAGAAGTTTGAGGAGTTCCAAACGACACTGACGAAAAGTAACGAAGTG TTTGCCACCTTCAAAAAAGATATGGATACGGTCTTGGAAGAATCACTAAC TTACAAAAAGAAATGTGAGGAACTCCTTCGAACTGAAGCTGAATTACGTG CTCAGGCTGTCTCTGACGAAAAACCAAAGAGCGAGGAGACTGAAAGCGAA ACGACAGACGAAACAAACAACGAATGACCGGTTGATAACGGGCTGGCAAC AGATAGTCCAGACCAGTCACTTGATGTGAGTGATCCGTCGGTCAGCAGTA CAACTCCTTCGCCCACACCTGAGACAACAGCTCTTCCTGATACGAACGCT GAGCGGCGCACTCAAAATCAACAAACTATAAGCAGTCAAAAGACCAAAAT CGAAAAATTGGAAAGACTTTGTCGCGCACTGCAAGTCGAAAGGAAATCTC TTAGACAACAGTTGGACGAACATAAGATGACAAAGACCATTCGGAAATTG GAAAAAGAGTCAAATATGTGGAAGAACAGATGGGAAAATACGAACCACTC ACTTCTTCAGATGGTCGATGAGTTAGCACTATATACAGAGAAGTTTGAGG AGTTCCAAACGACACTGACGAAAAGTAACGAAGTGTTTGCCACCTTCAAA AAAGATATGGATACGGTCTTGGAAGAATCACTAACTTACAAAAAGAAATG TGAGGAACTCCTTCGAACTGAAGCTGAATTACGTGCTCAGGCTGTCTCTG ACGAAAAACCAAAGAGCGAGGAGACTGAAAGCGAAACGACAGACGAAACA AACAACGAATGACCGGTTGATAACGGGCTGGCAACAGATAGTCCAGACCA GTCACTTGATGTGAGTGATCCGTCGGTCAGCAGTACAACTCCTTCGCCCA CACCTGAGACAACAGCTCTTCCTGATACGAACGCTGAGCGGCGCACTCAA AATCAACAAACTATAAGCAGTCAAAAGACCAAAATCGAAAAATTGGAAAG ACTTTGTCGCGCACTGCAAGTCGAAAGGAAATCTCTTAGACAACAGTTGG ACGAACATAAGATGACAAAGACCATTCGGAAATTGGAAAAAGAGTCAAAT ATGTGGAAGAACAGATGGGAAAATACGAACCACTCACTTCTTCAGATGGT CGATGAGTTAGCACTATATACAGAGAAGTTTGAGGAGTTCCAAACGACAC TGACGAAAAGTAACGAAGTGTTTGCCACCTTCAAAAAAGATATGGATACG GTCTTGGAAGAATCACTAACTTACAAAAAGAAATGTGAGGAACTCCTTCG AACTGAAGCTGAATTACGTGCTCAGGCTGTCTCTGACGAAAAACCAAAGA GCGAGGAGACTGAAAGCGAAACGACAGACGAAACAAACAACGAATGACCG GTTGATAACGGGCTGGCAACAGATAGTCCAGACCAGTCACTTGATGTGAG TGATCCGTCGGTCAGCAGTACAACTCCTTCGCCCACACCTGAGACAACAG CTCTTCCTGATACGAACGCTGAGCGGCGCACTCAAAATCAACAAACTATA AGCAGTCAAAAGACCAAAATCGAAAAATTGGAAAGACTTTGTCGCGCACT GCAAGTCGAAAGGAAATCTCTTAGACAACAGTTGGACGAACATAAGATGA CAAAGACCATTCGGAAATTGGAAAAAGAGTCAAATATGTGGAAGAACAGA TGGGAAAATACGAACCACTCACTTCTTCAGATGGTCGATGAGTTAGCACT ATATACAGAGAAGTTTGAGGAGTTCCAAACGACACTGACGAAAAGTAACG AAGTGTTTGCCACCTTCAAAAAAGATATGGATACGGTCTTGGAAGAATCA CTAACTTACAAAAAGAAATGTGAGGAACTCCTTCGAACTGAAGCTGAATT ACGTGCTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00052350-exon-scaffold_213-1575043694:544131..544207 | TCONS_00052350-exon-scaffold_213-1575043694:544131..544207 | Clytia hemisphaerica | exon |
TCONS_00052350-exon-scaffold_213-1575043694:543515..543607 | TCONS_00052350-exon-scaffold_213-1575043694:543515..543607 | Clytia hemisphaerica | exon |
TCONS_00052350-exon-scaffold_213-1575043694:543135..543230 | TCONS_00052350-exon-scaffold_213-1575043694:543135..543230 | Clytia hemisphaerica | exon |
TCONS_00052350-exon-scaffold_213-1575043694:541998..542117 | TCONS_00052350-exon-scaffold_213-1575043694:541998..542117 | Clytia hemisphaerica | exon |
TCONS_00052350-exon-scaffold_213-1575043694:541057..541185 | TCONS_00052350-exon-scaffold_213-1575043694:541057..541185 | Clytia hemisphaerica | exon |
TCONS_00052350-exon-scaffold_213-1575043694:540625..540990 | TCONS_00052350-exon-scaffold_213-1575043694:540625..540990 | Clytia hemisphaerica | exon |
TCONS_00052350-exon-scaffold_213-1510915933:544131..544207 | TCONS_00052350-exon-scaffold_213-1510915933:544131..544207 | Clytia hemisphaerica | exon |
TCONS_00052350-exon-scaffold_213-1510915933:543515..543607 | TCONS_00052350-exon-scaffold_213-1510915933:543515..543607 | Clytia hemisphaerica | exon |
TCONS_00052350-exon-scaffold_213-1510915933:543135..543230 | TCONS_00052350-exon-scaffold_213-1510915933:543135..543230 | Clytia hemisphaerica | exon |
TCONS_00052350-exon-scaffold_213-1510915933:541998..542117 | TCONS_00052350-exon-scaffold_213-1510915933:541998..542117 | Clytia hemisphaerica | exon |
TCONS_00052350-exon-scaffold_213-1510915933:541057..541185 | TCONS_00052350-exon-scaffold_213-1510915933:541057..541185 | Clytia hemisphaerica | exon |
TCONS_00052350-exon-scaffold_213-1510915933:540625..540990 | TCONS_00052350-exon-scaffold_213-1510915933:540625..540990 | Clytia hemisphaerica | exon |
TCONS_00052350-exon-scaffold_213-1491911889:544131..544207 | TCONS_00052350-exon-scaffold_213-1491911889:544131..544207 | Clytia hemisphaerica | exon |
TCONS_00052350-exon-scaffold_213-1491911889:543515..543607 | TCONS_00052350-exon-scaffold_213-1491911889:543515..543607 | Clytia hemisphaerica | exon |
TCONS_00052350-exon-scaffold_213-1491911889:543135..543230 | TCONS_00052350-exon-scaffold_213-1491911889:543135..543230 | Clytia hemisphaerica | exon |
TCONS_00052350-exon-scaffold_213-1491911889:541998..542117 | TCONS_00052350-exon-scaffold_213-1491911889:541998..542117 | Clytia hemisphaerica | exon |
TCONS_00052350-exon-scaffold_213-1491911889:541057..541185 | TCONS_00052350-exon-scaffold_213-1491911889:541057..541185 | Clytia hemisphaerica | exon |
TCONS_00052350-exon-scaffold_213-1491911889:540625..540990 | TCONS_00052350-exon-scaffold_213-1491911889:540625..540990 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_213 | supercontig | scaffold_213:540625..544207 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR026183 | Taxilin_fam |
Vocabulary: Molecular Function
Term | Definition |
GO:0019905 | syntaxin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0019905 |
syntaxin binding |
Blast
BLAST of TCONS_00052350 vs. Swiss-Prot (Human)
Match: TXLNA (Alpha-taxilin OS=Homo sapiens GN=TXLNA PE=1 SV=3) HSP 1 Score: 102.834 bits (255), Expect = 2.610e-24 Identity = 62/120 (51.67%), Postives = 93/120 (77.50%), Query Frame = 3
Query: 3 VLEESLTYKKKCXXXXXXXXXXXXXXXXYTEKFEEFQTTLTKSNEVFATFXXXXXXXXXXIRKLEKESNMWKNRWENTNHSLLQMVDERTQNQQTISSQKTKIEKLERLCRALQVERKSL 362
+L+E++ ++ CE + + E L+ QLALYTEKFEEFQ TL+KS+EVF TFK++M+ MTK I+KLEKE+ M+++RWE++N +LL+M +E+T + + + KI++LE+LCRALQ ER L
Sbjct: 362 LLKEAVESQRMCELMKQQETHLKQQLALYTEKFEEFQNTLSKSSEVFTTFKQEMEKMTKKIKKLEKETTMYRSRWESSNKALLEMAEEKTVRDKELEGLQVKIQRLEKLCRALQTERNDL 481
The following BLAST results are available for this feature:
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