TCONS_00052277 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052277
Unique NameTCONS_00052277
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2673

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052277 ID=TCONS_00052277|Name=TCONS_00052277|organism=Clytia hemisphaerica|type=transcript|length=2673bp
GGGGGTAATGCACAAAATTTCTTATAACAACAACTTTGATATGAGGCTAA
AAGTTGGAAAAGTTAGAACAAATTAGGAACAATTTCAGatattaaaggtt
ttgcttttaaataagagtgatatcgttttcttactcatcaatcttaattc
acaagctttttcacattggattgacacatatgtggagcaagattggtcag
aaagaggaaaattaaaacatttttttgcttatgtcagcataatataacaa
taggcagacactgtcctgatatgaaacatgtgtctgatatgaaacgaaca
cttatgtaaaaataaaacctttaatggaAAAATGCTAAGTTTTAAACCCT
TTTTAAGCTCGCAAACTTTCCGGTTCTAGTAAAATATATTGCCTAAAATT
ATTTTCCTAATTGAGACCAACATTTAGCTAGAACATTACATTACTTCACG
GAAACATCACGGTTTTTGCCAGCAGTGACAAATCTTAAGCTACAGAAAAA
CTGTTCATAAAttaccactactggcaaaaaccggggtgttTCCGTAGAAA
CACGACGTCACTGATGTCGAATTCACCACGTTTCTTCTATAAAAGTTAGT
AGATGTGTTTTCTTCAAAGTTTCATGTCAGCTTAGcgatcaaaaataaat
catgtaTTCATATCATATTTAGAATTCAAAACTTCCTATAACATCCAATT
TTATAAGATTGGCATCATGTCCACAATATTATACTTGTTTCCTGGGAAGT
TGGAACGTGTTTGtaggtaaaattttctgaaattgaaATTCTGTAATCCA
GAACCAAAGTTTGATAAAATCTATAAACGAAATGTCTCCCGATCGACCAT
CGCAGCCAGGTGATTAACGACAATTTCTGCAGCTGATTGTCAAAAAATCT
GACCGCAGTTTCAACTGGACCAAGTTAAAACATTCCTAACATGTTCTCTA
TCCTTTTGCTTAGTCATCAGTCAAATAATTACCTACTGGAACAATTACGT
CATCATAGGTTGGCGGTGGGTCGTGTATACCAGGCGGAGGTGGTGGTGCT
TGTCTTTTGAGTGAAGACTTTCGCGGAGTGTTTTCGTAGATACTTTCTGG
TGGGGGTGGCGGAGCTGATTTCGGTTTTATGACTGGTTTTTGAGGCGTGA
CGATCGCTACTTCTACTTGATGGGCGTGTGGCGGTGGGGGCGGATTATTT
GAAGGTTTTATTATAGAATTCCGTGGAGATATTGTTGCAGGTTTCACAGC
AATTGGTGGTCTTGTAATCGAATCAGGACGGGGCGGAACGCCCGGTCTTT
TATTTGGTAAATTAGGCGCTGATGGGTCGGTTCGTATCGACGCTGATGGA
CCAGGGCCTGGGTCACGGGATTGCTGACCAAGACGTTCTAAAGTCTGTAT
TTTATTGCGAACATTGACAAGTTCTATGTTATTACCAGCAGGGCTTTCAG
TTGTAGACTGATCCATTAAATGTGTCGTTTCAGTTGAATTTAAGTCTTTC
CCATTTTGAGTGAAATATGCTTGTTCGTCGAAATCTTTGCCCTTGTTACA
TAGATGGCACATATACATTGTGAATGAAACTAGACATAGTAAAGCAATGA
TGGCAACAAAAATGTATAAAACAACGTAAAATGTCGCCATGTTTATTTCT
GATAATGTTATTCCCAGAAAATTGACGACTCCAATTGACGGTTTCAAGTC
TCCTGGCGTTGAAGTTGTTTAAGAGTATAACCAGTTAANCATTCCTAACA
TGTTCTCTATCCTTTTGCTTAGTCATCAGTCAAATAATTACCTACTGGAA
CAATTACGTCATCATAGGTTGGCGGTGGGTCATGTATACCAGGCGGAGGT
GGTGGTGCTTGTCTTTTGAGTGAAGACTTTCGCGGAGTGTTTTCGTAGAT
ACTTTCTGGTGGGGGTGGCGGAGCTGATTTCGGTTTTATGACTGGTTTTT
GAGGCGTGACGATCGCTACTTCTACTTGATGGGCGTGTGGCGGTGGGGGC
GGATTATTTGAAGGTTTTATTATAGAATTCCGTGGAGATATTGTTGCAGG
TTTCACAGCAATTGGTGGTCTTGTAATCGAATCAGGACGGGGCGGAACGC
CCGGTCTTTTATTTGGTAAATTAGGCGCTGATGGGTCGGTTCGTATCGAC
GCTGATGGACCAGGGCCTGGGTCACGGGATTGCTGACCAAGACGTTCTAA
AGTCTGTATTTTATTGCGAACATTGACAAGTTCTATGTTATTACCGGCAG
GGCTTTCAGTTGTAGACTGATCCATTAAATGTGTCGTTTCAGTTGAATTT
AAGTCTTTCCCATTTTGAGTGAAATATGCTTGTTCGTCGAAATCTTTGCC
CTTGTTACATAGATGGCACATATACATTGTGAATGAAACTAGACATAGTA
AAGCAATGATGGCAACAAAAATGTATAAAACAACGTAAAATGTCGCCATG
TTTATTTCTGATAATGTTATTCCCAGAAAATTGACGACTCCAATTGACGG
TTTCAAGTCTCCTGGCGTTGAAGTTGTTTAAGAGTATAACCAGTTAAGTA
ACAAAATATTCCATTTGTTAGAAACTACGTATTTTTCTATATAtttcaat
tatatttttatttcatattttttatctGAAACGAAACAAATATATGAGAA
ACATGATTTATGATATTCAAATT
Run BLAST on NCBI

transcript from alignment at scaffold_213:963364..966036+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052277 ID=TCONS_00052277|Name=TCONS_00052277|organism=Clytia hemisphaerica|type=transcript|length=2673bp|location=Sequence derived from alignment at scaffold_213:963364..966036+ (Clytia hemisphaerica)
GGGGGTAATGCACAAAATTTCTTATAACAACAACTTTGATATGAGGCTAA
AAGTTGGAAAAGTTAGAACAAATTAGGAACAATTTCAGatattaaaggtt
ttgcttttaaataagagtgatatcgttttcttactcatcaatcttaattc
acaagctttttcacattggattgacacatatgtggagcaagattggtcag
aaagaggaaaattaaaacatttttttgcttatgtcagcataatataacaa
taggcagacactgtcctgatatgaaacatgtgtctgatatgaaacgaaca
cttatgtaaaaataaaacctttaatggaAAAATGCTAAGTTTTAAACCCT
TTTTAAGCTCGCAAACTTTCCGGTTCTAGTAAAATATATTGCCTAAAATT
ATTTTCCTAATTGAGACCAACATTTAGCTAGAACATTACATTACTTCACG
GAAACATCACGGTTTTTGCCAGCAGTGACAAATCTTAAGCTACAGAAAAA
CTGTTCATAAAttaccactactggcaaaaaccggggtgttTCCGTAGAAA
CACGACGTCACTGATGTCGAATTCACCACGTTTCTTCTATAAAAGTTAGT
AGATGTGTTTTCTTCAAAGTTTCATGTCAGCTTAGcgatcaaaaataaat
catgtaTTCATATCATATTTAGAATTCAAAACTTCCTATAACATCCAATT
TTATAAGATTGGCATCATGTCCACAATATTATACTTGTTTCCTGGGAAGT
TGGAACGTGTTTGtaggtaaaattttctgaaattgaaATTCTGTAATCCA
GAACCAAAGTTTGATAAAATCTATAAACGAAATGTCTCCCGATCGACCAT
CGCAGCCAGGTGATTAACGACAATTTCTGCAGCTGATTGTCAAAAAATCT
GACCGCAGTTTCAACTGGACCAAGTTAAAACATTCCTAACATGTTCTCTA
TCCTTTTGCTTAGTCATCAGTCAAATAATTACCTACTGGAACAATTACGT
CATCATAGGTTGGCGGTGGGTCGTGTATACCAGGCGGAGGTGGTGGTGCT
TGTCTTTTGAGTGAAGACTTTCGCGGAGTGTTTTCGTAGATACTTTCTGG
TGGGGGTGGCGGAGCTGATTTCGGTTTTATGACTGGTTTTTGAGGCGTGA
CGATCGCTACTTCTACTTGATGGGCGTGTGGCGGTGGGGGCGGATTATTT
GAAGGTTTTATTATAGAATTCCGTGGAGATATTGTTGCAGGTTTCACAGC
AATTGGTGGTCTTGTAATCGAATCAGGACGGGGCGGAACGCCCGGTCTTT
TATTTGGTAAATTAGGCGCTGATGGGTCGGTTCGTATCGACGCTGATGGA
CCAGGGCCTGGGTCACGGGATTGCTGACCAAGACGTTCTAAAGTCTGTAT
TTTATTGCGAACATTGACAAGTTCTATGTTATTACCAGCAGGGCTTTCAG
TTGTAGACTGATCCATTAAATGTGTCGTTTCAGTTGAATTTAAGTCTTTC
CCATTTTGAGTGAAATATGCTTGTTCGTCGAAATCTTTGCCCTTGTTACA
TAGATGGCACATATACATTGTGAATGAAACTAGACATAGTAAAGCAATGA
TGGCAACAAAAATGTATAAAACAACGTAAAATGTCGCCATGTTTATTTCT
GATAATGTTATTCCCAGAAAATTGACGACTCCAATTGACGGTTTCAAGTC
TCCTGGCGTTGAAGTTGTTTAAGAGTATAACCAGTTAANCATTCCTAACA
TGTTCTCTATCCTTTTGCTTAGTCATCAGTCAAATAATTACCTACTGGAA
CAATTACGTCATCATAGGTTGGCGGTGGGTCATGTATACCAGGCGGAGGT
GGTGGTGCTTGTCTTTTGAGTGAAGACTTTCGCGGAGTGTTTTCGTAGAT
ACTTTCTGGTGGGGGTGGCGGAGCTGATTTCGGTTTTATGACTGGTTTTT
GAGGCGTGACGATCGCTACTTCTACTTGATGGGCGTGTGGCGGTGGGGGC
GGATTATTTGAAGGTTTTATTATAGAATTCCGTGGAGATATTGTTGCAGG
TTTCACAGCAATTGGTGGTCTTGTAATCGAATCAGGACGGGGCGGAACGC
CCGGTCTTTTATTTGGTAAATTAGGCGCTGATGGGTCGGTTCGTATCGAC
GCTGATGGACCAGGGCCTGGGTCACGGGATTGCTGACCAAGACGTTCTAA
AGTCTGTATTTTATTGCGAACATTGACAAGTTCTATGTTATTACCGGCAG
GGCTTTCAGTTGTAGACTGATCCATTAAATGTGTCGTTTCAGTTGAATTT
AAGTCTTTCCCATTTTGAGTGAAATATGCTTGTTCGTCGAAATCTTTGCC
CTTGTTACATAGATGGCACATATACATTGTGAATGAAACTAGACATAGTA
AAGCAATGATGGCAACAAAAATGTATAAAACAACGTAAAATGTCGCCATG
TTTATTTCTGATAATGTTATTCCCAGAAAATTGACGACTCCAATTGACGG
TTTCAAGTCTCCTGGCGTTGAAGTTGTTTAAGAGTATAACCAGTTAAGTA
ACAAAATATTCCATTTGTTAGAAACTACGTATTTTTCTATATAtttcaat
tatatttttatttcatattttttatctGAAACGAAACAAATATATGAGAA
ACATGATTTATGATATTCAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033076XLOC_033076Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052277-exon-scaffold_213-1491911889:963364..966036TCONS_00052277-exon-scaffold_213-1491911889:963364..966036Clytia hemisphaericaexon
TCONS_00052277-exon-scaffold_213-1510915933:963364..966036TCONS_00052277-exon-scaffold_213-1510915933:963364..966036Clytia hemisphaericaexon
TCONS_00052277-exon-scaffold_213-1575043694:963364..966036TCONS_00052277-exon-scaffold_213-1575043694:963364..966036Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:963364..966036 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.60068	4.18987	4.04223	3.45655	1.1596	1.39583	3.42421	3.74812	1.5862	1.62307	2.86057	0.927019	1.68831	1.83708	1.37119	1.62158	1.01371	1.26084	0.478489	0.455186	0.951122	1.15947	3.47195	2.94496	3.73783	3.80389	1.51371	2.09969	1.95562	2.12981
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052277 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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