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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052460 ID=TCONS_00052460|Name=TCONS_00052460|organism=Clytia hemisphaerica|type=transcript|length=545bp
AAATCGGTGAAATCAAATACGCCTTATTTCGGTACCGGCATCGTTTCAAC
AGCTCTTTCTTTATCAATCCTTTAGATCCTCACTgtcagtctgccatttt
gaCCATTAAGAATGTTGCTTTGACGTCACAATGGTATCCCCTTGAAagga
agaaatattttcatgGCAACAATTGTGATAAGTTGATCAAAAGTCTGTGT
TTTACACGCTCTTTTTGTAATCGTGAAATAATGGCTGAGGACGAAGCGGT
CATTGAGGATCTGGATTTcgctttcaatgaaaatggagaGATTCCGACAG
CTTTGGCAATGCTTCAGATGATGGTTAAAACAGTGGAGCAAGTCAGAGGT
TTGGATCTAGATGAAGACAGAGATACAAAGAAGCCATTTAAAGAAGTCTT
TGAACTTTTTATTGACCATTTCAAATCACATGAAGCTCAAACCGAAGTGA
AAAATCAACTTCGAAGATTTCTTCAAGCAGCATACACACTAGATATCAAT
CGTGCTTTACATGGATCTAAAGTACCTATTGCAGCAAGTTTCCAG Run BLAST on NCBI protein sequence of TCONS_00052460-protein >TCONS_00052460-protein ID=TCONS_00052460-protein|Name=TCONS_00052460-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
IGEIKYALFRYRHRFNSSFFINPLDPHCQSAILTIKNVALTSQWYPLERK
KYFHGNNCDKLIKSLCFTRSFCNREIMAEDEAVIEDLDFAFNENGEIPTA
LAMLQMMVKTVEQVRGLDLDEDRDTKKPFKEVFELFIDHFKSHEAQTEVK
NQLRRFLQAAYTLDINRALHGSKVPIAASFQ Run BLAST on NCBI transcript from alignment at scaffold_214:178527..179454+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052460 ID=TCONS_00052460|Name=TCONS_00052460|organism=Clytia hemisphaerica|type=transcript|length=928bp|location=Sequence derived from alignment at scaffold_214:178527..179454+ (Clytia hemisphaerica)
AAATCGGTGAAATCAAATACGCCTTATTTCGGTACCGGCATCGTTTCAAC
AGCTCTTTCTTTATCAATCCTTTAGATCCTCACTgtcagtctgccatttt
gaCCATTAAGAATGTTGCTTTGACGTCACAATGGTATCCCCTTGAAagga
agaaatattttcatgGCAACAATTGTGATAAGTTGATCAAAAGTCTGTGT
TTTACACGCTCTTTTTGTAATCGTGAAATAATGGCTGAGGACGAAGCGGT
CATTGAGGATCTGGATTTcgctttcaatgaaaatggagaGGTATTTTCTA
TTCTTTCTTTGTGCAGTTTTCCTCCCTATTGTTGTGGATATTTATGTATT
TCTTGTGAGGGAGACATTTAGGATTTGTTCAGCAGCTAAAGGAAAGAGTC
AAAGTCAAAGGTAAGAAATCCAGGAAGAAGAGTGACACCCTTCGGGTGGA
CATAGAAAATGGAGCCCCtggcaacctcgtccccgtttATTCCAGGCTCT
ATTCATGCTACTGatagacgccagagaataccctatTACCTGCCGCTATC
ATCGGTAACTATCAGCAGAAGGCTGATATTATGCGCCGGGAACAAGATTG
GCCTCCGAATCGTCCGCCTCAACTGgttgcaaacttacttacttaaacgt
aatttttaattttgctttgATAGATTCCGACAGCTTTGGCAATGCTTCAG
ATGATGGTTAAAACAGTGGAGCAAGTCAGAGGTTTGGATCTAGATGAAGA
CAGAGATACAAAGAAGCCATTTAAAGAAGTCTTTGAACTTTTTATTGACC
ATTTCAAATCACATGAAGCTCAAACCGAAGTGAAAAATCAACTTCGAAGA
TTTCTTCAAGCAGCATACACACTAGATATCAATCGTGCTTTACATGGATC
TAAAGTACCTATTGCAGCAAGTTTCCAG Coding sequence (CDS) from alignment at scaffold_214:178527..179454+ >TCONS_00052460 ID=TCONS_00052460|Name=TCONS_00052460|organism=Clytia hemisphaerica|type=CDS|length=1086bp|location=Sequence derived from alignment at scaffold_214:178527..179454+ (Clytia hemisphaerica)
ATCGGTGAAATCAAATACGCCTTATTTCGGTACCGGCATCGTTTCAACAG
CTCTTTCTTTATCAATCCTTTAGATCCTCACTgtcagtctgccattttga
CCATTAAGAATGTTGCTTTGACGTCACAATGGTATCCCCTTGAAaggaag
aaatattttcatgGCAACAATTGTGATAAGTTGATCAAAAGTCTGTGTTT
TACACGCTCTTTTTGTAATCGTGAAATAATGGCTGAGGACGAAGCGGTCA
TTGAGGATCTGGATTTcgctttcaatgaaaatggagaGATTCCGACAGCT
TTGGCAATGCTTCAGATGATGGTTAAAACAGTGGAGCAAGTCAGAGGTTT
GGATCTAGATGAAGACAGAGATACAAAGAAGCCATTTAAAGAAGTCTTTG
AACTTTTTATTGACCATTTCAAATCACATGAAGCTCAAACCGAAGTGAAA
AATCAACTTCGAAGATTTCTTCAAGCAGCATACACACTAGATATCAATCG
TGCTTTACATGGATCTAAAGTACCTATTGCAGCAAGTTTCCAGATCGGTG
AAATCAAATACGCCTTATTTCGGTACCGGCATCGTTTCAACAGCTCTTTC
TTTATCAATCCTTTAGATCCTCACTgtcagtctgccattttgaCCATTAA
GAATGTTGCTTTGACGTCACAATGGTATCCCCTTGAAaggaagaaatatt
ttcatgGCAACAATTGTGATAAGTTGATCAAAAGTCTGTGTTTTACACGC
TCTTTTTGTAATCGTGAAATAATGGCTGAGGACGAAGCGGTCATTGAGGA
TCTGGATTTcgctttcaatgaaaatggagaGATTCCGACAGCTTTGGCAA
TGCTTCAGATGATGGTTAAAACAGTGGAGCAAGTCAGAGGTTTGGATCTA
GATGAAGACAGAGATACAAAGAAGCCATTTAAAGAAGTCTTTGAACTTTT
TATTGACCATTTCAAATCACATGAAGCTCAAACCGAAGTGAAAAATCAAC
TTCGAAGATTTCTTCAAGCAGCATACACACTAGATATCAATCGTGCTTTA
CATGGATCTAAAGTACCTATTGCAGCAAGTTTCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052460-exon-scaffold_214-1491911889:178527..178816 | TCONS_00052460-exon-scaffold_214-1491911889:178527..178816 | Clytia hemisphaerica | exon |
| TCONS_00052460-exon-scaffold_214-1510915933:178527..178816 | TCONS_00052460-exon-scaffold_214-1510915933:178527..178816 | Clytia hemisphaerica | exon |
| TCONS_00052460-exon-scaffold_214-1575043694:178527..178816 | TCONS_00052460-exon-scaffold_214-1575043694:178527..178816 | Clytia hemisphaerica | exon |
| TCONS_00052460-exon-scaffold_214-1491911889:179200..179454 | TCONS_00052460-exon-scaffold_214-1491911889:179200..179454 | Clytia hemisphaerica | exon |
| TCONS_00052460-exon-scaffold_214-1510915933:179200..179454 | TCONS_00052460-exon-scaffold_214-1510915933:179200..179454 | Clytia hemisphaerica | exon |
| TCONS_00052460-exon-scaffold_214-1575043694:179200..179454 | TCONS_00052460-exon-scaffold_214-1575043694:179200..179454 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_214 | supercontig | scaffold_214:178527..179454 + |
Blast
The following BLAST results are available for this feature:
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