TCONS_00005213 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005213
Unique NameTCONS_00005213
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length407

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005213 ID=TCONS_00005213|Name=TCONS_00005213|organism=Clytia hemisphaerica|type=transcript|length=407bp
GGTGGACATATATCTTGGGAACACATTTTAACAgcacaaaataaatttga
cataTGTTTTCAAGAGAATGAATTATTTGACCCTACTTTTGCTGTCATTA
CAACTTTCAGAATGTGCAATTATTTCAAGAGATGGTGCTGAcacaaaaat
ttctaaattgaaTTCAACAGCGACTTTGAAATGGAACTTGAATGGCGTGG
TAGGTAACTCCCCTGCAACTGTGTATAGCGTGCACTATAACCAAGATAAA
AATGCTTTCTTGCAAATATTTGAACTCTCAAATACATTTACTAAACCCCT
GACTGTTCAAAATGACCCTTTCAATGGTCGAGTATCAGGCACCATAACTC
TAAACAACGGAAATGGAGTTTTATCAGTTGAGTTACAAAATGTTCAATAT
GAAGACA
Run BLAST on NCBI

protein sequence of TCONS_00005213-protein

>TCONS_00005213-protein ID=TCONS_00005213-protein|Name=TCONS_00005213-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MNYLTLLLLSLQLSECAIISRDGADTKISKLNSTATLKWNLNGVVGNSPA
TVYSVHYNQDKNAFLQIFELSNTFTKPLTVQNDPFNGRVSGTITLNNGNG
VLSVELQNVQYED
Run BLAST on NCBI

transcript from alignment at sc0000051:449621..450321-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005213 ID=TCONS_00005213|Name=TCONS_00005213|organism=Clytia hemisphaerica|type=transcript|length=701bp|location=Sequence derived from alignment at sc0000051:449621..450321- (Clytia hemisphaerica)
GGTGGACATATATCTTGGGAACACATTTTAACAGCACAAAATAAATTTGA
CATATGTTTTCAAGAGAATGAATTATTTGACCCTACTTTTGCTGTCATTA
CAACTTTCAGGTAAGTTAATACACCTTTTCGACCGTAGCCACTAATTGCT
GCGCGGGCATTTTTTACCACCCTAAAACCGTCCCAGTCTTTTTTGAAGAC
AATAGAAAAAAGTGTAAAAAAAGGATTGGATCAAGTTTAGGGTGGTAAAA
AATGCCCGCGCGGCAATTGGCGGCTACGGTCAAAAAGGTGTATTGCACTC
GAGTTATAAATCTTTACTCCTCGATAAGCATAAAGGCCGGTAGTCAGGTA
CAGTGTTATAAGTCAAAAAGTTCTTTTCTGAGTTTTTCGATTTTACACTT
TCAGAATGTGCAATTATTTCAAGAGATGGTGCTGACACAAAAATTTCTAA
ATTGAATTCAACAGCGACTTTGAAATGGAACTTGAATGGCGTGGTAGGTA
ACTCCCCTGCAACTGTGTATAGCGTGCACTATAACCAAGATAAAAATGCT
TTCTTGCAAATATTTGAACTCTCAAATACATTTACTAAACCCCTGACTGT
TCAAAATGACCCTTTCAATGGTCGAGTATCAGGCACCATAACTCTAAACA
ACGGAAATGGAGTTTTATCAGTTGAGTTACAAAATGTTCAATATGAAGAC
A

Coding sequence (CDS) from alignment at sc0000051:449621..450321-

>TCONS_00005213 ID=TCONS_00005213|Name=TCONS_00005213|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at sc0000051:449621..450321- (Clytia hemisphaerica)
AATGTGCAATTATTTCAAGAGATGGTGCTGACACAAAAATTTCTAAATTG
AATTCAACAGCGACTTTGAAATGGAACTTGAATGGCGTGGTAGGTAACTC
CCCTGCAACTGTGTATAGCGTGCACTATAACCAAGATAAAAATGCTTTCT
TGCAAATATTTGAACTCTCAAATACATTTACTAAACCCCTGACTGTTCAA
AATGACCCTTTCAATGGTCGAGTATCAGGCACCATAACTCTAAACAACGG
AAATGGAGTTTTATCAGTTGAGTTACAAAATGTTCAATATGAAGACATGA
ATTATTTGACCCTACTTTTGCTGTCATTACAACTTTCAGAATGTGCAATT
ATTTCAAGAGATGGTGCTGACACAAAAATTTCTAAATTGAATTCAACAGC
GACTTTGAAATGGAACTTGAATGGCGTGGTAGGTAACTCCCCTGCAACTG
TGTATAGCGTGCACTATAACCAAGATAAAAATGCTTTCTTGCAAATATTT
GAACTCTCAAATACATTTACTAAACCCCTGACTGTTCAAAATGACCCTTT
CAATGGTCGAGTATCAGGCACCATAACTCTAAACAACGGAAATGGAGTTT
TATCAGTTGAGTTACAAAATGTTCAATATGAAGACATGAATTATTTGACC
CTACTTTTGCTGTCATTACAACTTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002962XLOC_002962Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005213-proteinTCONS_00005213-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005213-exon-sc0000051-1575043694:450212..450321TCONS_00005213-exon-sc0000051-1575043694:450212..450321Clytia hemisphaericaexon
TCONS_00005213-exon-sc0000051-1575043694:449621..449917TCONS_00005213-exon-sc0000051-1575043694:449621..449917Clytia hemisphaericaexon
TCONS_00005213-exon-sc0000051-1510915933:450212..450321TCONS_00005213-exon-sc0000051-1510915933:450212..450321Clytia hemisphaericaexon
TCONS_00005213-exon-sc0000051-1510915933:449621..449917TCONS_00005213-exon-sc0000051-1510915933:449621..449917Clytia hemisphaericaexon
TCONS_00005213-exon-sc0000051-1491911889:450212..450321TCONS_00005213-exon-sc0000051-1491911889:450212..450321Clytia hemisphaericaexon
TCONS_00005213-exon-sc0000051-1491911889:449621..449917TCONS_00005213-exon-sc0000051-1491911889:449621..449917Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:449621..450321 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.76279	2.9704	2.63741	6.153	8.21559	5.7283	15.4344	18.3315	9.81448	8.22923	11.9812	9.54666	20.0201	17.0784	26.7588	29.2623	13.5855	14.8898	24.3805	25.1138	5.54374	4.30957	5.9579	5.60338	49.826	43.0949	3.68538	2.09767	10.1427	9.11806
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005213 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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