TCONS_00052704 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052704
Unique NameTCONS_00052704
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length429

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052704 ID=TCONS_00052704|Name=TCONS_00052704|organism=Clytia hemisphaerica|type=transcript|length=429bp
GATGTTTTCACAGTTGAAGAATCTCAAATCTTTCTTCAACAAAATATCAA
ACGGGATGAAACAGAATCCACGACCAAGCAGCTCTATGAAGTGCTCGGGT
GTCATCCTTTGGGTATGCAACAAGCAATATCCTATATTAACGAGCATGGC
ATTGATATAGAAACTTACATTACTGAgttcaaaaaaagacaaaaggagTA
CATGTCAAAGGAATCGGATCAGATCGGAAAAGCGACCGTTTACACCACCT
TATCGTTAGCTTACGAGAGAATGGAGAACGAAGGTGATAGCGCCATTATC
CAGCTAATCAACATCATTGCATATCTAGATGGAAGAGATATCAAGAAAGG
TCTCTTACTCAAATGTGTCAATGACGACGTATCAACGTTGAATGACATAC
tccattttttatcaaaatattcaatcaTT
Run BLAST on NCBI

protein sequence of TCONS_00052704-protein

>TCONS_00052704-protein ID=TCONS_00052704-protein|Name=TCONS_00052704-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
DVFTVEESQIFLQQNIKRDETESTTKQLYEVLGCHPLGMQQAISYINEHG
IDIETYITEFKKRQKEYMSKESDQIGKATVYTTLSLAYERMENEGDSAII
QLINIIAYLDGRDIKKGLLLKCVNDDVSTLNDILHFLSKYSII
Run BLAST on NCBI

transcript from alignment at scaffold_218:475153..475581

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052704 ID=TCONS_00052704|Name=TCONS_00052704|organism=Clytia hemisphaerica|type=transcript|length=429bp|location=Sequence derived from alignment at scaffold_218:475153..475581 (Clytia hemisphaerica)
AAtgattgaatattttgataaaaaatggaGTATGTCATTCAACGTTGATA
CGTCGTCATTGACACATTTGAGTAAGAGACCTTTCTTGATATCTCTTCCA
TCTAGATATGCAATGATGTTGATTAGCTGGATAATGGCGCTATCACCTTC
GTTCTCCATTCTCTCGTAAGCTAACGATAAGGTGGTGTAAACGGTCGCTT
TTCCGATCTGATCCGATTCCTTTGACATGTActccttttgtctttttttg
aacTCAGTAATGTAAGTTTCTATATCAATGCCATGCTCGTTAATATAGGA
TATTGCTTGTTGCATACCCAAAGGATGACACCCGAGCACTTCATAGAGCT
GCTTGGTCGTGGATTCTGTTTCATCCCGTTTGATATTTTGTTGAAGAAAG
ATTTGAGATTCTTCAACTGTGAAAACATC

Coding sequence (CDS) from alignment at scaffold_218:475153..475581

>TCONS_00052704 ID=TCONS_00052704|Name=TCONS_00052704|organism=Clytia hemisphaerica|type=CDS|length=429bp|location=Sequence derived from alignment at scaffold_218:475153..475581 (Clytia hemisphaerica)
AAtgattgaatattttgataaaaaatggaGTATGTCATTCAACGTTGATA
CGTCGTCATTGACACATTTGAGTAAGAGACCTTTCTTGATATCTCTTCCA
TCTAGATATGCAATGATGTTGATTAGCTGGATAATGGCGCTATCACCTTC
GTTCTCCATTCTCTCGTAAGCTAACGATAAGGTGGTGTAAACGGTCGCTT
TTCCGATCTGATCCGATTCCTTTGACATGTActccttttgtctttttttg
aacTCAGTAATGTAAGTTTCTATATCAATGCCATGCTCGTTAATATAGGA
TATTGCTTGTTGCATACCCAAAGGATGACACCCGAGCACTTCATAGAGCT
GCTTGGTCGTGGATTCTGTTTCATCCCGTTTGATATTTTGTTGAAGAAAG
ATTTGAGATTCTTCAACTGTGAAAACATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033308XLOC_033308Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052704-exon-scaffold_218-1491911889:475153..475581TCONS_00052704-exon-scaffold_218-1491911889:475153..475581Clytia hemisphaericaexon
TCONS_00052704-exon-scaffold_218-1510915933:475153..475581TCONS_00052704-exon-scaffold_218-1510915933:475153..475581Clytia hemisphaericaexon
TCONS_00052704-exon-scaffold_218-1575043694:475153..475581TCONS_00052704-exon-scaffold_218-1575043694:475153..475581Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052704-proteinTCONS_00052704-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:475153..475581 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.18259	0	0	0.171849	0.369259	0.388197	0.321214	0.504975	0.490141	0.957483	1.75226	1.71206	1.22045	2.07349	0.183733	0	2.06485	2.09065	0.155918	0	0	0.168101	0.17314	0.927142	0	0	0	0.26031
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052704 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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