|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052616 ID=TCONS_00052616|Name=TCONS_00052616|organism=Clytia hemisphaerica|type=transcript|length=1151bp
ggaGCATATTACTGACTGTGATCGTCTACCATTGTGTTGTGATCACTGCT
CAGTAGCAGATATACCAAGAAATGAAATGGAGACTCATCTTACAAACTGC
ATGAAAGTACCGCGGCCATGTCCCTTTCAACCAATTGGCTGTGAAGAAAA
GAAGAACTACCTCTTCACCAGGAAAGAGCTAAAGAAAAACATATCGCGCT
GATGGTTCCAAAGCTGAATGAAGTCCACCAAACAATTACTACACAAACCC
AGCTCTTGGTGGAACAAGGTCAACTCATCAATCACCAGCAAATTGAAATA
ACGAATTTAAGTGTAAGAATGGCTTCTTATCAAGCCGATATAGGTGACCA
AGCTATGCAGATTCGGCAACTTGAAAACAACAACGCTACAAAAACCCAAC
AAATCATCGCTCATCGTAGAAGGTTAGTTGAACAAGAGAGAAAAACTGCC
CTGAATGAACGAAAGCTTCtagagaaagaaagagaaattaATTCATTGAA
AACCAATCAAGATAACATTTTGACTAGGTTAACTTCTCTGGAACGTCTTT
CGGATCGTTCTTCTATGAAGAATACACATTTCTGGCGTTTCCCGGACTTT
GTTGCAGAATGGAGACACGCCTACGCAAATGGCACTTGCTTTCAAAACCG
ATTTGTATCTCTAGCTGGCTATAAGATAGAAGTTCAAATTGAAGCTCAGC
CTGATAATTCAGTGAGTATTTTTGCACGTACTGTGAAAGGTGCTTTTGAT
GATTCTTTGCCATGGCCTATGAATTTGGAGATGTTTTCATGTGCCATTAT
CGACCAGAATTACCAGACACAAAACAATCACGCTATTGGATTGGCTGATA
TTCAATATGCTTTTCGAAAGCCGCCTCATCGAAATTTGTCCCAAGGCTGG
CCtcgatttcttcgctttgcggaTATTCAGCAATATATTCACCAAGATGA
TCAAGCACTCATTATCAGTATAGATTTAAAGTTTTGCGAGTAACATGACT
TTTACATCGGTTATACAAATTTACTTTACAACCTTATATTATTAAACAAA
CGAAAACAGCTCCTAATGTCAGGTTCGATTGTTTTGTAGAACCAAAATAA
GACATTACTTTAGTacattcttgatatttttccaATTGTTGCTTTTTGAA
G Run BLAST on NCBI transcript from alignment at scaffold_218:691115..693013+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052616 ID=TCONS_00052616|Name=TCONS_00052616|organism=Clytia hemisphaerica|type=transcript|length=1899bp|location=Sequence derived from alignment at scaffold_218:691115..693013+ (Clytia hemisphaerica)
ggaGCATATTACTGACTGTGATCGTCTACCATTGTGTTGTGATCACTGCT
CAGTAGCAGATATACCAAGAAATGAAGTTAGTACcaaataattcatgata
tgcaccatttgCAATATCCTCTGAGAATatagacccaacagctgattggt
tgcaagtgacgtattgactgatttgaCATCATTTACAACAAATCAGCTGT
TGGTTCTATAATGTAATGTTAGTTAATGActttgcaatggtgcatatcat
gaatactgtGTTTTATTTAATTCACTTATTGTAACTGTCTACAGACTAAA
TTTGAATCATGTTTAATGAAATTCTAATTGGTAATGCTGAACACTATATG
GTGATAATATTATTCTCCAAATTTCAGATGGAGACTCATCTTACAAACTG
CATGAAAGTACCGCGGCCATGTCCCTTTCAACCAATTGGCTGTGAAGAAA
AGGTATTATTATTGCTAATATTGAATTCATTTTCGTATTTGCGAAAAGTG
AAGAATCGACGTCAAAATCGCGTTTTGACGTTATTTCCGGTCGATTTAAT
CGAGTTAGTTACGTTGGGAAATCAACTATGTTCACTTAAAAGTCCTCTAT
AtcgttttttgagagctttcgattgGTATAAGTGGTTTCCGGTTTTATTG
GCTaatttcgtcaaaatttagCGGTCAAGGGGACGCCCctgtgacgtcag
tttttgaGTCCTGAAAAAGGCCTTAGCACAAAACCCTCTCGCGAAAAACT
CTTTATGCTTCATTCTTTGAAATGGACCAGGTCTGGTTGCTTCGCATAAA
TTATGTCACGGGTCGAAAGGGTTTGTCCCCTACTAACGGAGTCtttattt
ttaaagataaatgATTTTATTCTTCCATATCATGTGTAGTTCGTTTTAGA
AGAACTACCTCTTCACCAGGAAAGAGCTAAAGAAAAACATATCGCGCTGA
TGGTTCCAAAGCTGAATGAAGTCCACCAAACAATTACTACACAAACCCAG
CTCTTGGTGGAACAAGGTCAACTCATCAATCACCAGCAAATTGAAATAAC
GAATTTAAGTGTAAGAATGGCTTCTTATCAAGCCGATATAGGTGACCAAG
CTATGCAGATTCGGCAACTTGAAAACAACAACGCTACAAAAACCCAACAA
ATCATCGCTCATCGTAGAAGGTTAGTTGAACAAGAGAGAAAAACTGCCCT
GAATGAACGAAAGCTTCtagagaaagaaagagaaattaATTCATTGAAAA
CCAATCAAGATAACATTTTGACTAGGTTAACTTCTCTGGAACGTCTTTCG
GATCGTTCTTCTATGAAGAATACACATTTCTGGCGTTTCCCGGACTTTGT
TGCAGAATGGAGACACGCCTACGCAAATGGCACTTGCTTTCAAAACCGAT
TTGTATCTCTAGCTGGCTATAAGATAGAAGTTCAAATTGAAGCTCAGCCT
GATAATTCAGTGAGTATTTTTGCACGTACTGTGAAAGGTGCTTTTGATGA
TTCTTTGCCATGGCCTATGAATTTGGAGATGTTTTCATGTGCCATTATCG
ACCAGAATTACCAGACACAAAACAATCACGCTATTGGATTGGCTGATATT
CAATATGCTTTTCGAAAGCCGCCTCATCGAAATTTGTCCCAAGGCTGGCC
tcgatttcttcgctttgcggaTATTCAGCAATATATTCACCAAGATGATC
AAGCACTCATTATCAGTATAGATTTAAAGTTTTGCGAGTAACATGACTTT
TACATCGGTTATACAAATTTACTTTACAACCTTATATTATTAAACAAACG
AAAACAGCTCCTAATGTCAGGTTCGATTGTTTTGTAGAACCAAAATAAGA
CATTACTTTAGTacattcttgatatttttccaATTGTTGCTTTTTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052616-exon-scaffold_218-1491911889:691115..691190 | TCONS_00052616-exon-scaffold_218-1491911889:691115..691190 | Clytia hemisphaerica | exon |
| TCONS_00052616-exon-scaffold_218-1510915933:691115..691190 | TCONS_00052616-exon-scaffold_218-1510915933:691115..691190 | Clytia hemisphaerica | exon |
| TCONS_00052616-exon-scaffold_218-1575043694:691115..691190 | TCONS_00052616-exon-scaffold_218-1575043694:691115..691190 | Clytia hemisphaerica | exon |
| TCONS_00052616-exon-scaffold_218-1491911889:691492..691566 | TCONS_00052616-exon-scaffold_218-1491911889:691492..691566 | Clytia hemisphaerica | exon |
| TCONS_00052616-exon-scaffold_218-1510915933:691492..691566 | TCONS_00052616-exon-scaffold_218-1510915933:691492..691566 | Clytia hemisphaerica | exon |
| TCONS_00052616-exon-scaffold_218-1575043694:691492..691566 | TCONS_00052616-exon-scaffold_218-1575043694:691492..691566 | Clytia hemisphaerica | exon |
| TCONS_00052616-exon-scaffold_218-1491911889:692014..693013 | TCONS_00052616-exon-scaffold_218-1491911889:692014..693013 | Clytia hemisphaerica | exon |
| TCONS_00052616-exon-scaffold_218-1510915933:692014..693013 | TCONS_00052616-exon-scaffold_218-1510915933:692014..693013 | Clytia hemisphaerica | exon |
| TCONS_00052616-exon-scaffold_218-1575043694:692014..693013 | TCONS_00052616-exon-scaffold_218-1575043694:692014..693013 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_218 | supercontig | scaffold_218:691115..693013 + |
Blast
The following BLAST results are available for this feature:
|
