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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052684 ID=TCONS_00052684|Name=TCONS_00052684|organism=Clytia hemisphaerica|type=transcript|length=1975bpRun BLAST on NCBI protein sequence of TCONS_00052684-protein >TCONS_00052684-protein ID=TCONS_00052684-protein|Name=TCONS_00052684-protein|organism=Clytia hemisphaerica|type=polypeptide|length=449bp MAAGKNENHDLKNEESSIVQEGQTTSKKDKGKDDDEKTEGFTIVSDKTSYRun BLAST on NCBI transcript from alignment at scaffold_218:883580..897186- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052684 ID=TCONS_00052684|Name=TCONS_00052684|organism=Clytia hemisphaerica|type=transcript|length=13607bp|location=Sequence derived from alignment at scaffold_218:883580..897186- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_218:883580..897186- >TCONS_00052684 ID=TCONS_00052684|Name=TCONS_00052684|organism=Clytia hemisphaerica|type=CDS|length=12150bp|location=Sequence derived from alignment at scaffold_218:883580..897186- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052684 vs. Swiss-Prot (Human)
Match: KAT8 (Histone acetyltransferase KAT8 OS=Homo sapiens GN=KAT8 PE=1 SV=2) HSP 1 Score: 556.599 bits (1433), Expect = 0.000e+0 Identity = 262/386 (67.88%), Postives = 316/386 (81.87%), Query Frame = 1
Query: 307 GEQCMVKKTDGEWQLSEIIHSR-KQPDGSIDYYVHYQGSNRRLDEWVPQDRVDRTRVIPES---ESKPIIDHPDGESDRKITRNQKRKHDEINHVQKSYEEMDPTTAALEKEHEAITRVKYIDTIEMGRYEIDTWYYSPYPDEYSKVKKLFICEYCCKYMKLELTYRNHVEKCNIRQPPGREIYRKANLSVYEVDGRDNKTYVQNVCLLAKLFLDHKTLYFDVEPFLFYILCDVDREGAHLVGYFSKEKDSPEGNNVACILTLPPYQRKGYGKFLIAFSYELSKIEGMIGSPEKPLSDLGKLGYRSYWSWVLLDVLKSSSGTLSIKDLSATTSITTEDVIGTLQSLNMVKYWKGQHVICVTPKLVEDHLKEFPLKRPLISVDRTCL 1452
GE + ++ D W +E+I SR +G ++YVHY G NRRLDEWV ++R+ T+ + ++ S+ + + +RKITRNQKRKHDEINHVQK+Y EMDPTTAALEKEHEAIT+VKY+D I +G YEID WY+SP+P++Y K KL++CEYC KYMK E +YR H+ +C RQPPG+EIYRK+N+SVYEVDG+D+K Y QN+CLLAKLFLDHKTLYFDVEPF+FYIL +VDR+GAH+VGYFSKEK+SP+GNNVACILTLPPYQR+GYGKFLIAFSYELSK+E +GSPEKPLSDLGKL YRSYWSWVLL++L+ GTLSIKDLS TSIT D+I TLQSLNMVKYWKGQHVICVTPKLVE+HLK K+P I+VD CL
Sbjct: 58 GETYLCRRPDSTWHSAEVIQSRVNDQEGREEFYVHYVGFNRRLDEWVDKNRLALTKTVKDAVQKNSEKYLSELAEQPERKITRNQKRKHDEINHVQKTYAEMDPTTAALEKEHEAITKVKYVDKIHIGNYEIDAWYFSPFPEDYGKQPKLWLCEYCLKYMKYEKSYRFHLGQCQWRQPPGKEIYRKSNISVYEVDGKDHKIYCQNLCLLAKLFLDHKTLYFDVEPFVFYILTEVDRQGAHIVGYFSKEKESPDGNNVACILTLPPYQRRGYGKFLIAFSYELSKLESTVGSPEKPLSDLGKLSYRSYWSWVLLEILRDFRGTLSIKDLSQMTSITQNDIISTLQSLNMVKYWKGQHVICVTPKLVEEHLKSAQYKKPPITVDSVCL 443 The following BLAST results are available for this feature:
BLAST of TCONS_00052684 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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