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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052782 ID=TCONS_00052782|Name=TCONS_00052782|organism=Clytia hemisphaerica|type=transcript|length=1769bp
TTAAGGATAAAATAgcatttgtctttttttcatttatctactttctcttt
ctttttcagcatttttagaTAATAAGATAAGCAAAGTGATTTAGATTAAA
ACACAAATTGGTCGTTAAGGATtatggatgaagtttgattcttgaaagaa
ttttgatgccattaaaagttttcgaaaaggTAATAAAAGAGTTGTTGTTG
GTGGAATGTTTTGAGTTTCGTACTTGACAAACAAAGAATTAAACTATGGA
CAACACaacattatttttttGTTTGGTCACGTGTATCGTGTTAGCATCCC
CTTTAACCATTGATCTGAACACCAATACCACAACACTGGAATCAATCCAA
CCGTCATCCTCGTCAATCATGATGATTTCATCTAGCATTGTTGCCAATAA
TTCTTCAATGAACGGTACCGCCTCGGGTGGAGGGAAAACAGACGAAGAAC
TTGCACGAATGGCGTCGCTTTATGTGGCTGTTGGTTTCATCCCAGGAATG
ATCATGTTAGCAGTTATTTGTCGTTACTTGCCAGACTACATGTACAAATG
GTGCTCCGACATGTGAGCTTTTTGTTGAAAGTTAAAAATCTCAGAGGAGG
CGGTGAACGGTGAACTTTTATTTGGATGGGTGGACGAGTGAAGTCTGTCT
TActcaatatttttgaaatgaaaaaaagaaaggaaCAGACGTACAAAGTC
ATAAATTAAACAAgaatattattttgaaaaactgttGGCTCTTGTGGTGA
AAGAAACAATACAAACGATACTGAATTGGTAGCAGCCAGAAGCATCTCAA
ACACATGCAGAGTGTGGATTTCTTTACCGGTGCAAACTACACGAAAGAGG
CTAAAAGGCTTACTTATGAAAAAGATTCGACGTTTTCCCTTTTCCAATAG
ATAAGGAGCTATTAAGGTTTAGGTGTTAGGGAGGACGAATTTTGTCCCTT
TTTGACATATCACATACTTATCTCGTGAATATATAGTTGTTTTGTCTCTT
ATTAAACCATACTACCCACGCAATATATTTTCTCAACGAGGCTCAGAAAA
CCTGAGTTGTAAATTACGACAATTGTGACGTCATTAGACTCAAATCATGA
CGCCATGTAAGGGTTTTCTAACTTGAAAaaagttattattttgaaattat
gacGTAGTATAAATGGGTTTTTGTAACTTTGGTTTTCTGAGCCTCGTTTT
CAACCTTCTCAAGCAAAATTCTTCTCCTAGAAGAGATCAATCCATAAAAA
TCAGACGAGTATTCATGAtttgcaccactgcaatgactttacgaaattat
gcaatttttctgggttttgttccacccaatacgtcactttttctattgtt
taagtgacgtattggatggaaaattttaaaagttctctcGACTCTTCAGt
cgtggtgcatatcatgaataagctTATACAATCTTTTATGCCATCTTCGT
CACAACTCAATCAATCACATATCACAGGGAAAAGCAGGGAAAAGTTCAGA
TATCTTGACCTCGAGAGTATTGGTAATGGAAGATACTTATCAACGGAGCG
GTTTGCAACCAAAGGGCTATATGTACTCTTTAAATTTACCTTTACTCACG
GATCAATGAACATTTGTATACAAAAAGAACAGGCGGGTAACAAACCATTA
ACAGAAGGAATCCAAGAAaatttctttaaccctttgagtgccagggtctt
tttttctaagtttttttttaaaaatcgctagttcaaactttaagggctta
tatctcctgatctagaaag Run BLAST on NCBI transcript from alignment at scaffold_22:198299..204704- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052782 ID=TCONS_00052782|Name=TCONS_00052782|organism=Clytia hemisphaerica|type=transcript|length=6406bp|location=Sequence derived from alignment at scaffold_22:198299..204704- (Clytia hemisphaerica)
TTAAGGATAAAATAGCATTTGTCTTTTTTTCATTTATCTACTTTCTCTTT
CTTTTTCAGCATTTTTAGATAATAAGATAAGCAAAGTGATTTAGATTAAA
ACACAAATTGGTCGTTAAGGATTATGGATGAAGTTTGATTCTTGAAAGAA
TTTTGATGCCATTAAAAGTTTTCGAAAAGGTAATAAAAGAGTTGTTGTTG
GTGGAATGTTTTGAGTTTCGTACTTGACAAACAAAGAATTAAACTATGGA
CAACACAACATTATTTTTTTGTAAGTTTGTATTTCTTCTTTCACAATCAG
AAACTTTGACTAAGTCGAAAAATCGCAAAATTTGCGACATGTGATTTTAA
TTTTAAAGACATTAACTTTCACGTAAATGGCTGGAAATCGCAAAACTTGC
TGTTTGCGGAGTTAGCTCCGTTTCTCTGTTGCATTTGCATAGCTTCTTTT
GAATCTTCTGTTGAATCTTGAAAATTGTTTTGAAACACGAAAACTGGAGT
TTTTTGATTGAACCCATACAAATTTTGACGCTTTGCTTTTTTTGAACTTT
GGCTTTGAAAACACGATTCTGGCTATTTTTGTTTATGTTTGAGATTTTTA
ATTCTATTTTGAGTCCAAGAAGGTCATTTAACCCCATTTTTAGGTCCACT
GATTCCTCTTGCCATGTTTTGAAAAATACACGTTTTTTTATAAGAACATC
CAAATCTTTGAAGCCTTCGGATGTTCTTAACTTTTTCAGTTTTAAGCCAA
AAAATGTTCTTAACATGTTCTTATTTTCACCATTTTGTGACCATTATTGC
CCATTTTCCTATAAGAAATCGGGTATTTTCGAGTTCGCAAAGCCTTAAAA
AATATAGTTTGTTCTTATAAAGAAAATGTGTAATGACGTTTTTTTAATTT
TTTCACATGACAGCTACAATTCTACGAATGATTTACTGCTTTCCAACATG
TTTAATAGTCTCTTTAAGTTGCACGTGTTTGCTTTGTTTTGCCAAAATGA
CTTAAATATTTGACATATTTGAACTTCCTTATAATGACATCATTATTTTT
CCTCAAACTGGTTGGCTCAGAAGTAAGACCAGACTCAAATTAGAAAATGA
TGTGTCATGGTCAGTACAGATAGACTGCTCTCTTCCACCCCCATGCTGTA
TGTTACATCCATAACGCGATTCAATTTTCAAATTTCAACCCAGTTTTATA
AGATTACTGGAACAATTAGTGTTGGTTTGAAGATGTTCTAAATTTTGAAA
AAAATTATAATATTGTAGTAATGTATATAGCTACAATCATATTTCTTCCA
ATACACTTTTTATTATAAGAACATCCAAAATTTTAAAAGCCTTTAGATGT
TCTTAACTTTTCGGGTTTCAAGCCTAATAGTGTTCTTAACATGTTCTTAT
TTTCAGCATTTTTTGAGTATATTCGTCCATTTTCCTGAGAAATCAGGTGT
TTTAGAACCCATGAAGCCTTAAAATGTTCTTATTATAGTTTGCTCTTGTA
TACAACAGAAATCCTACCATAAATGTCGAAACCATTTTAATGAACGAATG
TACCTTTAAATTTGAAGTGAATCAATTTCAAATCTGAAGATAGTGAATAA
GAACTGGGGAAATGAAGCACAGGCTCAGCCAAGACTTAAGGTGAAAGGTT
TTATTTTTACATAAGTGTTCCCGTTTCATATCAGGCACATATATCATATC
AGGACAGTGTTTGTTCTTTGGTCTGCCTATTGCTATATTGCTATATATAT
TATGATGATATACGCAAAAAGTTGTTTTTTCCTCTTTCTGACCAATCTTG
CTCCACATCCGTGTCAATCTAATGTGAAAAAGCTTGTGAATTAAAGATTT
GAAAATAAGCAAGCGATATCACTTAAAAACAAAAACTTTAAGAAAACGTG
CAATAGTTTCTTATAACAATCAACAAGAAAGAAGCACGTCACTAAGAGCC
TCTCCTTTTTTAAAGAAAAAACTATTATGGTATCTCTCTAATCATATTTA
TCTCTATGATGTCACTAGGATGCCAAAATATTTTGTTATTAAGTGGTGTC
ATATGTCTCGAAGTCACATCCGGAAATTCTAGCTTAGTTGCTCTTACGCC
TTGAGTATCTCTCTGTGTTACCAGCTTGTCTGATACCTACACGTTTTTTA
TATAAGAAGCATTCCGATGTTCTTAACTTTTTGAGTTTTAAGCCTAAAAA
TGTTCTTAATATATGTTCTTATTCTCGCCTTTTTGTATTTAGTCCATTTT
CGATATAAGGTGTTTCAGAGCCCGCAAAGCTTTAAAATGTTCTTAACTTG
TTCTTAACATTTTGACCATCGAAGCCTTATGTTCTTATATAGTTTGTACT
TACAAAAAAACGTGTATTAGACTATTTCCTTGTTTGAACATGCAGGTTAC
TGTATGTTATTTTTATATTGACATTCTTTAAATCGATATTTAAGTAACGA
AACTTTGAGTAAGAGAATCTTCTTTAAAATCTAGAAGTTAGAAGATTGAT
CGAATCGAATACAGTAATGAAATTTTGAATCGAAGAAAGTTGATTGTATT
ATATTACCCATGTACATTTATTTTTAACTTTTGACTGCTTTTGATAAGGT
CACGAACCTTGATTTAAAATTAAATTTAGGTTTAAAAAGTGCATGACCTT
TAAGTTTGTTGAAATATTATTATGCGATACATAATGCTTTACTATAAGGC
CATACTCTCGGCTTTTTATTGATAGAAAACATTTCTTGGATTTGATAGTC
AGGTAAAATTCTCAAAAAAGATAAGTCGTAAAGTGTAGGGTGGATCGACT
TATCTGTTCCTAGTTCAGCCTCGATTAGACGGGTTATTATTGTTAACGAC
CACGTTATGCAAAGAAAACAAATAGTGGAAGAAATTTACTCAGTTGTTGT
TAAGAGCAACTTTTTTTTTCTGTTTTGTAAATGATTAAGTGGCCGCCTTT
AATAAATCATTGTTGATTTTTCGTAAGCAGTTATATAAAACGTATGTATG
AAGAAAAATAGTGGGAAGTTTTATTTGGTATTTATAATAACAATATGACC
ATGTTCTGATTTCGGTTGTTTGACATTTTCGAAAGAGGAGTAAAACTTTA
CTTTGATTTGATTTTTTGGTTTGAAGAACAGGCAGTGGATAAAATGAAGA
ATGTATTTGCTTCTCTGCTCCAAATCTTTGTTTTTATTCAAAGTAATGAT
CAACAATTTATGTTTTTTTATATGAATATGAAAAAGGGTTTAGTCAATCA
TGGAGGTATAAAGATAAACAGGAGTTGAATTTGTCGGTAATTGGTCGTTA
AAGTCTTTTGATTTCTTTTATGAAATAACCAAAAGAAAATATTAGGCTCG
CCCGACAAAATGCGACTTTTTAGTAGAACTCAAAATTGCTCTCTGATGAA
CATTCTTACTATCAGTATTGAAGATTTCTAGCCTTCTAATATGCAAATAC
TAAATAAAACTTCGTCCACGAAACAAGTTTATGTTCAATTTCGTTATTAA
ATTTTGTTTTGATAAGATATTTTCTCAAGCCAGAAAATGAAAAGTTCTTT
ATAAGCATACACGATTTCAGACTCACTTTGTAAACATAAATTTGCTGGAG
AATTTTGGAGGAAAGTATCAAGCAATAAAGTTCACCTTAAAGAAAACATT
GATCGAAAAATCTTATCATTTGATGAAGGATTGCCAAGTTTACAGGCCTT
TTTTTAGTCCAAATATTTTCTTACACTGATGTCAGAAACAATGAATCTCG
TCTCACCTAATTTCTAACATATAAATGAGCCAATATGCAATAAGATTTCA
TCAATAGACAAACAAGTTCATTAAGAATGCAAGACGTATGAGATTGTGAG
ATTACAAACCTCGTAATTTTTTCAATCGTGAGCTTGGTTACATAGTACAT
ACATCTCCTGTTTCTTTATACCTCCATGAGTTAATAAACGCTTTTTTGAT
AGTCCTAGGATTACACTTTTTCATAAGAACAAACTATATAAGAACAGAAG
GCTTCGATGGCCAAAATGTTAAGAGCATTATAAGAACATTTTTAGGCTTA
AATCTTGAAAAGTTAAGAATGGCTTCAAAAATTTTAGATGTTCTTATAAA
AAAATGTGTACGGGCCTACTAAAGGCCAATTATATGTTAGATTGGTGTAT
ATCATGGAGTCTGTTAAATAAATCAGCAGACTGTGTTCGCCAAGAAAAGC
TTGAGTTTTTCTTTTTTTTCTTCATGTTTTTATCAACCAAAACGAAAGAG
TACACGTTTTTTTTTTATAAGAACAAACTATGTAAGAACATAAGGCTTCG
AGGCGCAAAAATTTAAGAACATTCTAAGAACATTCTAAGNTGTTTTATAA
GAACAAACTATATAAGAGCATAAGGCTTCGATGGCCAAAAATTTAAGAAT
ATTCTAAGAACATTCTAAGGCTTTGGAGACTTAAAAACATGCATTTTCTT
AGGAAATTACATCAAAATGCTCAAAAAATGCTGAAAATAAGAACATTTTA
AGAACATTTTTAGCTTCAAATCCAAAAAACTAAGAACATCCGAAGGCTTC
GAAATTTTTTGACGTTCTTATAAAAAAAAACGTGTAATCCATATCTAAGC
CTATTGCAAAACCATTTTATGCCATTTTCAAAGTTCTTTCCTTATTTTCT
TTTCCACTGGAAAATTCCTATTAATAGAAAAAACCTATTTTTCGAGACTT
TCCTGAAATAATTCTCGAGAACAGTAATAGATAAGAAACTTGAGAATTGT
CTTCCTTTTCTGATAAATTTCAACATTATCATCAACTAAGAACACCATGA
CTAGGATGATTATGATAAGTACCATGACAGAGGCATACTATTATAATAAT
GTTCTTGTAGAGAAGATGATTTTGATAATAAATACGTTCATATTTTCCTT
TTCTCAGGTTTGGTCACGTGTATCGTGTTAGCATCCCCTTTAACCATTGA
TCTGAACACCAATACCACAACACTGGAATCAATCCAACCGTCATCCTCGT
CAATCATGATGATTTCATCTAGCATTGTTGCCAATAATTCTTCAATGAAC
GGTACCGCCTCGGGTGGAGGGAAAACAGACGAAGAACTTGCACGAATGGC
GTCGCTTTATGTGGCTGTTGGTTTCATCCCAGGAATGATCATGTTAGCAG
TTATTTGTCGTTACTTGCCAGACTACATGTACAAATGGTGCTCCGACATG
TGAGCTTTTTGTTGAAAGTTAAAAATCTCAGAGGAGGCGGTGAACGGTGA
ACTTTTATTTGGATGGGTGGACGAGTGAAGTCTGTCTTACTCAATATTTT
TGAAATGAAAAAAAGAAAGGAACAGACGTACAAAGTCATAAATTAAACAA
GAATATTATTTTGAAAAACTGTTGGCTCTTGTGGTGAAAGAAACAATACA
AACGATACTGAATTGGTAGCAGCCAGAAGCATCTCAAACACATGCAGAGT
GTGGATTTCTTTACCGGTGCAAACTACACGAAAGAGGCTAAAAGGCTTAC
TTATGAAAAAGATTCGACGTTTTCCCTTTTCCAATAGATAAGGAGCTATT
AAGGTTTAGGTGTTAGGGAGGACGAATTTTGTCCCTTTTTGACATATCAC
ATACTTATCTCGTGAATATATAGTTGTTTTGTCTCTTATTAAACCATACT
ACCCACGCAATATATTTTCTCAACGAGGCTCAGAAAACCTGAGTTGTAAA
TTACGACAATTGTGACGTCATTAGACTCAAATCATGACGCCATGTAAGGG
TTTTCTAACTTGAAAAAAGTTATTATTTTGAAATTATGACGTAGTATAAA
TGGGTTTTTGTAACTTTGGTTTTCTGAGCCTCGTTTTCAACCTTCTCAAG
CAAAATTCTTCTCCTAGAAGAGATCAATCCATAAAAATCAGACGAGTATT
CATGATTTGCACCACTGCAATGACTTTACGAAATTATGCAATTTTTCTGG
GTTTTGTTCCACCCAATACGTCACTTTTTCTATTGTTTAAGTGACGTATT
GGATGGAAAATTTTAAAAGTTCTCTCGACTCTTCAGTCGTGGTGCATATC
ATGAATAAGCTTATACAATCTTTTATGCCATCTTCGTCACAACTCAATCA
ATCACATATCACAGGGAAAAGCAGGGAAAAGTTCAGATATCTTGACCTCG
AGAGTATTGGTAATGGAAGATACTTATCAACGGAGCGGTTTGCAACCAAA
GGGCTATATGTACTCTTTAAATTTACCTTTACTCACGGATCAATGAACAT
TTGTATACAAAAAGAACAGGCGGGTAACAAACCATTAACAGAAGGAATCC
AAGAAAATTTCTTTAACCCTTTGAGTGCCAGGGTCTTTTTTTCTAAGTTT
TTTTTTAAAAATCGCTAGTTCAAACTTTAAGGGCTTATATCTCCTGATCT
AGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052782-exon-scaffold_22-1575043694:204435..204704 | TCONS_00052782-exon-scaffold_22-1575043694:204435..204704 | Clytia hemisphaerica | exon |
| TCONS_00052782-exon-scaffold_22-1575043694:198299..199797 | TCONS_00052782-exon-scaffold_22-1575043694:198299..199797 | Clytia hemisphaerica | exon |
| TCONS_00052782-exon-scaffold_22-1510915933:204435..204704 | TCONS_00052782-exon-scaffold_22-1510915933:204435..204704 | Clytia hemisphaerica | exon |
| TCONS_00052782-exon-scaffold_22-1510915933:198299..199797 | TCONS_00052782-exon-scaffold_22-1510915933:198299..199797 | Clytia hemisphaerica | exon |
| TCONS_00052782-exon-scaffold_22-1491911889:204435..204704 | TCONS_00052782-exon-scaffold_22-1491911889:204435..204704 | Clytia hemisphaerica | exon |
| TCONS_00052782-exon-scaffold_22-1491911889:198299..199797 | TCONS_00052782-exon-scaffold_22-1491911889:198299..199797 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_22 | supercontig | scaffold_22:198299..204704 - |
Blast
The following BLAST results are available for this feature:
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