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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052823 ID=TCONS_00052823|Name=TCONS_00052823|organism=Clytia hemisphaerica|type=transcript|length=1020bp
tcttataaaaaaacgtgtaagttgTGATAATCCACCCATTTGGTGTCATA
TACTCTTAAAGGAGATTACCAGACAGATTTGTGAACAATTGAATGAAAGA
AATGTGGAAATAGAGGGATGGAGACTTATAGATCGATCAAAGATGACTGA
CCAGAGCAAAGAGGGAGCTGAAAACTACAGATTGACAAGTTCTAAAATAC
AACAACACTATTTTGACATGCTTATCAATACTATTGATATCCAGCCTGGA
TGGAAAGTTTTAGATCTAGGTTGTGGAACTGGCAATGGAACAAAGAAGCT
ATGTGAACGAGTTGGTGCTTCTGGACATGTCATTGGCATAGATCCTATTG
CAGAGAGAATCGTTCAGGCGAAAGAGTACTATGCAGCAGGTAATATTAAA
TATCACACAGCATACGGTCGAGATGCGTGCACTTTCGGTGAAGGCATTTT
CGATCTTGTAGTCGCAGGTACAGTCATGCATTGGCTGTCCCCTGAAGAGA
AACAAAAAACATTGGAAAGTGTgtacaaagccttaaaacctGGTGGAATC
TTTCTCTTCAATAACATGTTGAAATATGACAGTGCAAACACCTTGAAATT
TCTCGATTTCTTTAAAGATCAAAGCGTCAAAGAAAAGCTCTTCGCTGCTG
TTTTCTGCCCAGATAAAAGAACTTTTTATGATCTGGCACAGAAAACAGGA
TTCAGCAGAACGACAATTGATGAAGTTTCAGTCCAAGTTCCATTTGATTC
ACTTGAACATGCAATTCATTGGTTTTCAGCTTCTCTACATGCTATTGGAT
TTCATACAGCTCTGGACGAATTACGTCAAGTTACCAGCGacgaaaataat
aatttggattttcttttcaatgaaaaaggaGAACCTTATTTTGATAATAA
ATATCATTTTGTAACTAGTCACAAGTAATTTTTCGGCGATAAATAGTGAA
TCTATTATATGATTGATTTTAAATCATTTTCGTAATAGCAGAAAAGATAT
CTTTCAAATAATTAAGTGAT Run BLAST on NCBI transcript from alignment at scaffold_220:36267..37973- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052823 ID=TCONS_00052823|Name=TCONS_00052823|organism=Clytia hemisphaerica|type=transcript|length=1707bp|location=Sequence derived from alignment at scaffold_220:36267..37973- (Clytia hemisphaerica)
TCTTATAAAAAAACGTGTAAGTTGTGATAATCCACCCATTTGGTGTCATA
TACTCTTAAAGGAGATTACCAGACAGATTTGTGAACAATTGAATGAAAGA
AATGTGGAAATAGAGGGATGGAGGTGAGTAAGAGGTCAATTCTTACTTAT
CCAAAATCTTATATTAATTTTTTGGTATATCTTGAAAGGAGGCAGTTGCC
TCTTTTTTGTGACTGAGAATTCAAGTCAACACTTGCTATGTTTGTTTGAT
AGGGGATAGTGATACAGTGATAACATTGGTAAAAGAATGACACTGTCATA
TCAAATTTGATATACGATTCAAGTCAATTTTGATAGAGAATTGGACAAAG
GTTTGAAAGAATTACAATCAAATTATCCAATTGTCTAACCCCTTGCGATT
TTTAATATGATATTAGAGTAATATAACTAGATGAAAGTTTAAGCTATGTA
TGCTTTACTTTTAATTTGATATGGATTTTTAGACTAGTTTTGACTGTAGG
CTACTGGCATCCACTAACGGATTCGTACTCCTTCTACTATACTATCTGTG
GTTTCGTAGGGGTCTGTGATTCAGACAAGACTTGCTCCTTTTTCTTTTTT
CAGAGATTGTTTGTTGAAACACATTTTTTTCTTCAAATCAACGGAATACT
CAAGCATTGACCCATCTCAGTTCATGCAGTGTTTGAAGTATTGAAGTTTA
CAGAAACTGTTTACAAGTCACTATTTTCCGTTTTCCTTGCATTTCTATCA
AGTCTTTTACTCACTTAAGCGGTATCTTAATTTCCATTCCCAATATTTTC
TTAATTTAAGACTTATAGATCGATCAAAGATGACTGACCAGAGCAAAGAG
GGAGCTGAAAACTACAGATTGACAAGTTCTAAAATACAACAACACTATTT
TGACATGCTTATCAATACTATTGATATCCAGCCTGGATGGAAAGTTTTAG
ATCTAGGTTGTGGAACTGGCAATGGAACAAAGAAGCTATGTGAACGAGTT
GGTGCTTCTGGACATGTCATTGGCATAGATCCTATTGCAGAGAGAATCGT
TCAGGCGAAAGAGTACTATGCAGCAGGTAATATTAAATATCACACAGCAT
ACGGTCGAGATGCGTGCACTTTCGGTGAAGGCATTTTCGATCTTGTAGTC
GCAGGTACAGTCATGCATTGGCTGTCCCCTGAAGAGAAACAAAAAACATT
GGAAAGTGTGTACAAAGCCTTAAAACCTGGTGGAATCTTTCTCTTCAATA
ACATGTTGAAATATGACAGTGCAAACACCTTGAAATTTCTCGATTTCTTT
AAAGATCAAAGCGTCAAAGAAAAGCTCTTCGCTGCTGTTTTCTGCCCAGA
TAAAAGAACTTTTTATGATCTGGCACAGAAAACAGGATTCAGCAGAACGA
CAATTGATGAAGTTTCAGTCCAAGTTCCATTTGATTCACTTGAACATGCA
ATTCATTGGTTTTCAGCTTCTCTACATGCTATTGGATTTCATACAGCTCT
GGACGAATTACGTCAAGTTACCAGCGACGAAAATAATAATTTGGATTTTC
TTTTCAATGAAAAAGGAGAACCTTATTTTGATAATAAATATCATTTTGTA
ACTAGTCACAAGTAATTTTTCGGCGATAAATAGTGAATCTATTATATGAT
TGATTTTAAATCATTTTCGTAATAGCAGAAAAGATATCTTTCAAATAATT
AAGTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052823-exon-scaffold_220-1575043694:37851..37973 | TCONS_00052823-exon-scaffold_220-1575043694:37851..37973 | Clytia hemisphaerica | exon |
| TCONS_00052823-exon-scaffold_220-1575043694:36267..37163 | TCONS_00052823-exon-scaffold_220-1575043694:36267..37163 | Clytia hemisphaerica | exon |
| TCONS_00052823-exon-scaffold_220-1510915933:37851..37973 | TCONS_00052823-exon-scaffold_220-1510915933:37851..37973 | Clytia hemisphaerica | exon |
| TCONS_00052823-exon-scaffold_220-1510915933:36267..37163 | TCONS_00052823-exon-scaffold_220-1510915933:36267..37163 | Clytia hemisphaerica | exon |
| TCONS_00052823-exon-scaffold_220-1491911889:37851..37973 | TCONS_00052823-exon-scaffold_220-1491911889:37851..37973 | Clytia hemisphaerica | exon |
| TCONS_00052823-exon-scaffold_220-1491911889:36267..37163 | TCONS_00052823-exon-scaffold_220-1491911889:36267..37163 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_220 | supercontig | scaffold_220:36267..37973 - |
Blast
The following BLAST results are available for this feature:
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