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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052828 ID=TCONS_00052828|Name=TCONS_00052828|organism=Clytia hemisphaerica|type=transcript|length=1887bp
aatcgaaaaaaaaatcttaaatatcacttctgtataaaaaaaacaatcac
aattataatcaaaataaaatcagaaaTGTGAAACAGATTAATTTGGAGTC
GACTTCTAAAAACAgctacattaaaggaagaaatttggcgggaagaaaat
ttaGCGGATTGGGCGAATTTGAtcgaaatccgccaaatttaacttttttt
ctgtcatacgccaaatttaagttgctctatttattcccccaaatgtgtgc
tatttcaggctttaaaacagatttttccttttttaatggcgatttttgga
caaaaatgtccttcgtccgccaaattaaattccttctgaaaaaacttttt
tggccatccgccaaaatttcttcctttaatgtataaAAGGAAGACCAAGG
GTTCAAATCAACAAAGTACGATAATAAAGCACATGAAAACAATAAGTTTT
ATGCTgacagaaattttttcaatcttGCATTCGGGAATTTTCCTCTGATA
ATTcatcttgattttcattttcaggtgtTTCGATTTGATTTTTGACCTCT
TCCTCGCTAACGACTTTCATTTCAACCGATTCTTCCTCTGTTTCTATCAA
CTCGTCACTTTCTTGATCTTTAGAGTTCTTCCATACTGTTTCTCGTAAAC
TTTCAGTTTTCTTAACCTCGTCATTACCTATTCCAAcattcttattttct
tctttaatcACGCTTGGCAGTCTCTTTTGATTCGCCTGATTATAAGCAGT
CGTCTGTTGCTCAGAAGCGCTACGTAATAACAACTGTTTCAAAACGCTGA
CGTTCTTTTGAGCTGAATTATTTTGAAagagtttatttatttcatcaAGA
ATTTGCGAATGGTCCTGTTTTAAAACATGTGGTTCAACTTTACCCGGTGC
TTTAACTGAAGTGGTTGAATTTTCCTTCGAATGGCGCCCTGTAACAACGA
CACTGGTGTTATTGCGTCGCTGCGTGTTTCGTCGACGACTTGAAAGGGTC
CTGTATGACTTTGGGGGAGGTGTATCGTTTTGTTTTGTCATTGATCTCAT
TAAGCAAGCGCTTACACGGAGCGGGGTGGGCTCACAAGGATAGCGGGCTT
TTTTATCCAATAAATTGCACGGATCCTCTTTTCTTATCACGCTATCTTCA
TATAAATCATTTAAACTTGGAAGTTTATGACCATCAGATCCGTTGAAAGC
AACAGACATAACGAAGAACTTTAATTTCTTCTCGATAACCAATTCTAAAT
AGAAAGTCAATGTGAATGTGTGCAAATAAAAAATAGTACAAGACACGTCC
AGTTGAACTAGTTAGTCACATAGCTCGGAAGCCAAGCAATGCTTTCACCG
CATGGATGTGATTTCGTCCACAAAGATAATAATGAGCACAATGAAGTTTA
AGCTCAAAATTGAGCCCTGTGCTGGTAattaaaaaccaattttttttaaa
aatcttcagaataaagaaagtcTGATACCTCACCCTCTTAgattttgatg
aaattttgaccaaatgatccatcacacaagaaaataagaccctgaaaatt
tcaccttgatatctcaagtagttttgaagatacagcgtcacaaagatagg
ctactaagcgaaaattgacccctaaaaatcatgaactctggtggggagca
gatttacattggatttcaagaactttttgtagggaatcaaaaaaaatcaa
attgagtctccaaaattttccccgaaaatctttaGCATCTCCTGTAGAGG
GCCTCAAACTTTGTTTAATCTGGGTTtagaagcacttttagctgtctgct
gatggtacttggagacttttttgaagcaaacttttgacctggagtggttt
actggtgggttttggccacaaaaataacattttcagg Run BLAST on NCBI transcript from alignment at scaffold_220:58950..60912- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052828 ID=TCONS_00052828|Name=TCONS_00052828|organism=Clytia hemisphaerica|type=transcript|length=1963bp|location=Sequence derived from alignment at scaffold_220:58950..60912- (Clytia hemisphaerica)
AATCGAAAAAAAAATCTTAAATATCACTTCTGTATAAAAAAAACAATCAC
AATTATAATCAAAATAAAATCAGAAATGTGAAACAGATTAATTTGGAGTC
GACTTCTAAAAACAGCTACATTAAAGGAAGAAATTTGGCGGGAAGAAAAT
TTAGCGGATTGGGCGAATTTGATCGAAATCCGCCAAATTTAACTTTTTTT
CTGTCATACGCCAAATTTAAGTTGCTCTATTTATTCCCCCAAATGTGTGC
TATTTCAGGCTTTAAAACAGATTTTTCCTTTTTTAATGGCGATTTTTGGA
CAAAAATGTCCTTCGTCCGCCAAATTAAATTCCTTCTGAAAAAACTTTTT
TGGCCATCCGCCAAAATTTCTTCCTTTAATGTATAAAAGGAAGACCAAGG
GTTCAAATCAACAAAGTACGATAATAAAGCACATGAAAACAATAAGTTTT
ATGCTGACAGAAATTTTTTCAATCTTGCATTCGGGAATTTTCCTCTGATA
ATTCATCTTGATTTTCATTTTCAGGTGTTTCGATTTGATTTTTGACCTCT
TCCTCGCTAACGACTTTCATTTCAACCGATTCTTCCTCTGTTTCTATCAA
CTCGTCACTTTCTTGATCTTTAGAGTTCTTCCATACTGTTTCTCGTAAAC
TTTCAGTTTTCTTAACCTCGTCATTACCTATTCCAACATTCTTATTTTCT
TCTTTAATCACGCTTGGCGNGTAAACTTTCAGTTTTCTTAACCTCGTCAT
TACCTATTCCAACATTCTTATTTTCTTCTTTAATCACGCTTGGCAGTCTC
TTTTGATTCGCCTGATTATAAGCAGTCGTCTGTTGCTCAGAAGCGCTACG
TAATAACAACTGTTTCAAAACGCTGACGTTCTTTTGAGCTGAATTATTTT
GAAAGAGTTTATTTATTTCATCAAGAATTTGCGAATGGTCCTGTTTTAAA
ACATGTGGTTCAACTTTACCCGGTGCTTTAACTGAAGTGGTTGAATTTTC
CTTCGAATGGCGCCCTGTAACAACGACACTGGTGTTATTGCGTCGCTGCG
TGTTTCGTCGACGACTTGAAAGGGTCCTGTATGACTTTGGGGGAGGTGTA
TCGTTTTGTTTTGTCATTGATCTCATTAAGCAAGCGCTTACACGGAGCGG
GGTGGGCTCACAAGGATAGCGGGCTTTTTTATCCAATAAATTGCACGGAT
CCTCTTTTCTTATCACGCTATCTTCATATAAATCATTTAAACTTGGAAGT
TTATGACCATCAGATCCGTTGAAAGCAACAGACATAACGAAGAACTTTAA
TTTCTTCTCGATAACCAATTCTAAATAGAAAGTCAATGTGAATGTGTGCA
AATAAAAAATAGTACAAGACACGTCCAGTTGAACTAGTTAGTCACATAGC
TCGGAAGCCAAGCAATGCTTTCACCGCATGGATGTGATTTCGTCCACAAA
GATAATAATGAGCACAATGAAGTTTAAGCTCAAAATTGAGCCCTGTGCTG
GTAATTAAAAACCAATTTTTTTTAAAAATCTTCAGAATAAAGAAAGTCTG
ATACCTCACCCTCTTAGATTTTGATGAAATTTTGACCAAATGATCCATCA
CACAAGAAAATAAGACCCTGAAAATTTCACCTTGATATCTCAAGTAGTTT
TGAAGATACAGCGTCACAAAGATAGGCTACTAAGCGAAAATTGACCCCTA
AAAATCATGAACTCTGGTGGGGAGCAGATTTACATTGGATTTCAAGAACT
TTTTGTAGGGAATCAAAAAAAATCAAATTGAGTCTCCAAAATTTTCCCCG
AAAATCTTTAGCATCTCCTGTAGAGGGCCTCAAACTTTGTTTAATCTGGG
TTTAGAAGCACTTTTAGCTGTCTGCTGATGGTACTTGGAGACTTTTTTGA
AGCAAACTTTTGACCTGGAGTGGTTTACTGGTGGGTTTTGGCCACAAAAA
TAACATTTTCAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052828-exon-scaffold_220-1575043694:60226..60912 | TCONS_00052828-exon-scaffold_220-1575043694:60226..60912 | Clytia hemisphaerica | exon |
| TCONS_00052828-exon-scaffold_220-1575043694:58950..60149 | TCONS_00052828-exon-scaffold_220-1575043694:58950..60149 | Clytia hemisphaerica | exon |
| TCONS_00052828-exon-scaffold_220-1510915933:60226..60912 | TCONS_00052828-exon-scaffold_220-1510915933:60226..60912 | Clytia hemisphaerica | exon |
| TCONS_00052828-exon-scaffold_220-1510915933:58950..60149 | TCONS_00052828-exon-scaffold_220-1510915933:58950..60149 | Clytia hemisphaerica | exon |
| TCONS_00052828-exon-scaffold_220-1491911889:60226..60912 | TCONS_00052828-exon-scaffold_220-1491911889:60226..60912 | Clytia hemisphaerica | exon |
| TCONS_00052828-exon-scaffold_220-1491911889:58950..60149 | TCONS_00052828-exon-scaffold_220-1491911889:58950..60149 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_220 | supercontig | scaffold_220:58950..60912 - |
Blast
The following BLAST results are available for this feature:
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