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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052841 ID=TCONS_00052841|Name=TCONS_00052841|organism=Clytia hemisphaerica|type=transcript|length=2956bp
GTGAGGCAGTCTCCAAGCCAAGGCAAATCAAATGGTCAGACTAATTCGCA
TACAATGAAAGTCATTGAAAGTTTCAATAACCCGTATACCAAATTGATCA
TTGTTTGCAAAGTGTGTGATAAGAAATCATCCAAGTTTCAACAtgattgg
aaaactcattattTGTCTCATGTCAGTGACGACCAAAAACCTCACCAGTG
CAAGATTTGTAATCGTGGGTTTATCAAGCCAGGCTTGCTTACGAAACATA
TGGAGAAGGTGCATGGTGTGTCAGGATCTagtgtcaaaaaagaagaattc
tCGATACCAAAAGCTGAGTCATTTTCGGGATATGACTTTTAAAGCAATAG
ATATTTGTTACGCTGTAAAAGTGTTGTATATTTGTAAATTAATTTGAAct
gatgaaaattttttttgcttgggagAGTTGAGTCAAGCCTTTTTATACTG
ACACATTGTAATCACACAAGTCATGCTTGCCAAATCTTACTCCGTTTCAG
AAAGTGAAGCAGTCTACAAGCCAAGGCAAATCAAATGGCCAGACCAATCT
TCATACTATGAAACttattgaaagttttgaaaatccttATACAAAATTGA
TCATTGTCTGTAAAGTATGTAATAAGGAGGCATCGAAATATCAACGtgat
tggaaaactcattattTGTCTCATGTCAGTGACGACCAAAAACCACACCA
GTGCAAGATCTGTAATCGCGGGTTTATCAAGCCAGGCTTACTCTCAAAAC
ACATGGAAAAGATGCATGGTGGTGCAGTAGAGTCATTTTCCAAAAAGGAA
GAATTTTCaataccaaaaactgagccatTTCCCAGCCACGACTTTTAAAG
TAGTGTACcatattttcacttttaaaagttttgaaataaagaaaattgta
attattttgaatttatcttTTTGGGAGAGTTGAGTGAAGGCATTTTATAT
TACAAGACCATCGTGATCACATTAGTTATGCTAGCCAAACCTTCTTCCAT
TTTAGAAGAAAGTGAAGCAGTCTCCTAGCCAAGGAAAATCTGATGGCCAC
AGTACACAAACAATGAAAGTCATTGAAAGCTTTGAAAATCCATACACCAA
GTTGATCATTGTTTGTAAGATTTGTAATAAAGAAGCATCAAAGTTTCAAC
GTAACTGGAAACCGCACTACTTGTCACATGTCGGTAATGATGAAAAACCA
CACAAATGTCAAGTTTGCAATCGTGGATTTATTCGGCCTGACTATCTTGC
CAAACACATGGAAAAGATACACGGTGGTGTTTCTGGTGCATCAGCTGCAG
TTAAGAAAGAAGAACCGGCTTTGATGAAGATTGAGCAATTCATATAATTC
TTATAAACACAACTCTTTTTCGTTATTTCTTGTATTTAGTCTTTGTGAGT
GTTGTTATCTAATGTTGGGAGAGTTGAATGGCAAGGTTCTATTTGTACTT
GAAAAACTTTTCTAGACCCATAAAATTCCATGTCCTGTTTTAGAAGAGAA
AATTGTCTGGGTCGAGTCACGGAAAATCAGATGGGCACACAACGCACACA
TTGAAAGTCATCGAAAGCTTTGAAAACCCATACACCAAACTGATTATTGT
CTGTAAAGTGTGCAACAAAGAAGCCTCAAAATTCCAACGAAACTGGAAAA
CTCACTACATGACACACTTTGGGAATGACCAGAAACCTCATCAATGTCAA
ATTTGTAATCATGGATTTGCATTCCCAGGCGGCCTTGCAAAACACATGGA
AAAAGTTCATGGTGTATCTTCAACGTCGACCACTCCTGTGAAACAAGAAC
CACCTCTTATGAAGATGGAATCATTCCTCTAAACTGCTGAAACCCAATTT
GTTGAGAGTTGACTGCTggctttttgaaattcttgtcattttatctttat
tttcattctttttgtctTTAGTTTCAAACTGGAGGAGGTACTACAACTTC
CAAATCAAAGACAACTTACACTGCCAGTTTGAAatacattgaaaattttg
ataaccCTTATGTGAAAATCATCCTTGTTTGCAAAGTATGTAACAAGGAG
CAAAGCTTGAAATTTGCGCACAACTGGAAAACACACTACCTTCAGCACGT
AAGCGAAGATGAAAGACCTCATAAATGTAATATTTGCAACAAGGGCTTCA
TCACCGCCCCTCAACTGAAAAAGCATATGAAACAACACGACAAAAAGCCA
AAGAAAGAAGATGTCAAGCCGTTTCAGGAAAGCCACCAACAGCAATTTCA
ACGGATGCAACAACAGCAGTATGGCCAACAAAGCAATCAACATTTCCCTA
CATTCAAGCAGGAGTTTTGAGCTAGCTATCATCTGTCTTTGTTCATATTT
TCCTTTCCTCTGCTCCTCGTTCATTTTGTACATGAAAATGTGTCATATTC
TTCAAGCTTTGATCTGTTTATGGTAGGGTTAGACTGCATTGtacttattt
ttattatatatttattgTGTTGGTTTGTGTTGGTGTTTCTtcgacataat
tttttttttcattccataTCATTATTCTAGGGGAAAAAAGCGAAATGCCG
TGTGATTTCTTCTTCTCAATCCAACAGTTCGTCTTCCATAGTCAGTAGCT
TGAAATATCTGGAAAATTTCTCCAACCCTTACGTCAGGCTCGTTGTACTC
TGTAAAATCTGCAGCAAAGAACAAACCATGACAAGCGCTGGGAACTGGAA
ACAACATTATTTCACTCACGTTAGTGAAGAAGAGAAGCCTCACAGATGTG
ACATTTGCAACAAAGGTTTCATCACGGCCCCCCAATTAAAAAGACATTTG
AAGCAGCACGAGAAGAAAGCCAAAAAAGAGGAGAAGATACAACTCCCAAG
TCAATTACCAGAACAGCGACCTCAAATTCAAGAACACATACCGTCACATC
ATCAACAACATTTCCTAAATAATCAATTCTTTCCCGGTCTTAAGAACGag
ttgtag Run BLAST on NCBI transcript from alignment at scaffold_220:157211..160761- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052841 ID=TCONS_00052841|Name=TCONS_00052841|organism=Clytia hemisphaerica|type=transcript|length=3551bp|location=Sequence derived from alignment at scaffold_220:157211..160761- (Clytia hemisphaerica)
GTGAGGCAGTCTCCAAGCCAAGGCAAATCAAATGGTCAGACTAATTCGCA
TACAATGAAAGTCATTGAAAGTTTCAATAACCCGTATACCAAATTGATCA
TTGTTTGCAAAGTGTGTGATAAGAAATCATCCAAGTTTCAACATGATTGG
AAAACTCATTATTTGTCTCATGTCAGTGACGACCAAAAACCTCACCAGTG
CAAGATTTGTAATCGTGGGTTTATCAAGCCAGGCTTGCTTACGAAACATA
TGGAGAAGGTGCATGGTGTGTCAGGATCTAGTGTCAAAAAAGAAGAATTC
TCGATACCAAAAGCTGAGTCATTTTCGGGATATGACTTTTAAAGCAATAG
ATATTTGTTACGCTGTAAAAGTGTTGTATATTTGTAAATTAATTTGAACT
GATGAAAATTTTTTTTGCTTGGGAGAGTTGAGTCAAGCCTTTTTATACTG
ACACATTGTAATCACACAAGTCATGCTTGCCAAATCTTACTCCGTTTCAG
AAAGTGAAGCAGTCTACAAGCCAAGGCAAATCAAATGGCCAGACCAATCT
TCATACTATGAAACTTATTGAAAGTTTTGAAAATCCTTATACAAAATTGA
TCATTGTCTGTAAAGTATGTAATAAGGAGGCATCGAAATATCAACGTGAT
TGGAAAACTCATTATTTGTCTCATGTCAGTGACGACCAAAAACCACACCA
GTGCAAGATCTGTAATCGCGGGTTTATCAAGCCAGGCTTACTCTCAAAAC
ACATGGAAAAGATGCATGGTGGTGCAGTAGAGTCATTTTCCAAAAAGGAA
GAATTTTCAATACCAAAAACTGAGCCATTTCCCAGCCACGACTTTTAAAG
TAGTGTACCATATTTTCACTTTTAAAAGTTTTGAAATAAAGAAAATTGTA
ATTATTTTGAATTTATCTTTTTGGGAGAGTTGAGTGAAGGCATTTTATAT
TACAAGACCATCGTGATCACATTAGTTATGCTAGCCAAACCTTCTTCCAT
TTTAGAAGAAAGTGAAGCAGTCTCCTAGCCAAGGAAAATCTGATGGCCAC
AGTACACAAACAATGAAAGTCATTGAAAGCTTTGAAAATCCATACACCAA
GTTGATCATTGTTTGTAAGATTTGTAATAAAGAAGCATCAAAGTTTCAAC
GTAACTGGAAACCGCACTACTTGTCACATGTCGGTAATGATGAAAAACCA
CACAAATGTCAAGTTTGCAATCGTGGATTTATTCGGCCTGACTATCTTGC
CAAACACATGGAAAAGATACACGGTGGTGTTTCTGGTGCATCAGCTGCAG
TTAAGAAAGAAGAACCGGCTTTGATGAAGATTGAGCAATTCATATAATTC
TTATAAACACAACTCTTTTTCGTTATTTCTTGTATTTAGTCTTTGTGAGT
GTTGTTATCTAATGTTGGGAGAGTTGAATGGCAAGGTTCTATTTGTACTT
GAAAAACTTTTCTAGACCCATAAAATTCCATGTCCTGTTTTAGAAGAGAA
AATTGTCTGGGTCGAGTCACGGAAAATCAGATGGGCACACAACGCACACA
TTGAAAGTCATCGAAAGCTTTGAAAACCCATACACCAAACTGATTATTGT
CTGTAAAGTGTGCAACAAAGAAGCCTCAAAATTCCAACGAAACTGGAAAA
CTCACTACATGACACACTTTGGGAATGACCAGAAACCTCATCAATGTCAA
ATTTGTAATCATGGATTTGCATTCCCAGGCGGCCTTGCAAAACACATGGA
AAAAGTTCATGGTGTATCTTCAACGTCGACCACTCCTGTGAAACAAGAAC
CACCTCTTATGAAGATGGAATCATTCCTCTAAACTGCTGAAACCCAATTT
GTTGAGAGTTGACTGCTGGCTTTTTGAAATTCTTGTCATTTTATCTTTAT
TTTCATTCTTTTTGTCTTTAGTTTCAAACTGGAGGAGGTACTACAACTTC
CAAATCAAAGACAACTTACACTGCCAGTTTGAAATACATTGAAAATTTTG
ATAACCCTTATGTGAAAATCATCCTTGTTTGCAAAGTATGTAACAAGGAG
CAAAGCTTGAAATTTGCGCACAACTGGAAAACACACTACCTTCAGCACGT
AAGCGAAGATGAAAGACCTCATAAATGTAATATTTGCAACAAGGGCTTCA
TCACCGCCCCTCAACTGAAAAAGCATATGAAACAACACGACAAAAAGCCA
AAGAAAGAAGATGTCAAGCCGTTTCAGGAAAGCCACCAACAGCAATTTCA
ACGGATGCAACAACAGCAGTATGGCCAACAAAGCAATCAACATTTCCCTA
CATTCAAGCAGGAGTTTTGAGCTAGCTATCATCTGTCTTTGTTCATATTT
TCCTTTCCTCTGCTCCTCGTTCATTTTGTACATGAAAATGTGTCATATTC
TTCAAGCTTTGATCTGTTTATGGTAGGGTTAGACTGCATTGTACTTATTT
TTATTATATATTTATTGTGTTGGTTTGTGTTGGTGTTTCTTCGACATAAT
TTTTTTTTTCATTCCATATCATTATTCTAGGGGAAAAAAGCGAAATGCCG
TGTGATTTCTTCTTCTCAATCCAACAGTTCGTCTTCCATAGTCAGTAGCT
TGAAATATCTGGAAAATTTCTCCAACCCTTACGTCAGGCTCGTTGTACTC
TGTAAAATCTGCAGCAAAGAACAAACCATGACAAGCGCTGGGAACTGGAA
ACAACATTATTTTACTCATGTTAGCGAAGAAGAAAAACCTCACAGATGCG
ACATTTGTCACAAAGGCTTTATCACGGCGCCGCATTTAAAAAAGCATTTA
AAACAGCATGAGAAGAAAGTCAAAAAGCAAAAGGAGGATACGGCATTCGA
AAACCATGCGAACATAGTCCATCAGCTACAATGTGAACCAATATATCAGT
TCCAACAACAGCAACAGCTTAGAACCGACTTTCTGCCTCCTGAATTTGAC
TCTGGAATCTGAAACTTGAAAAATGTTGGAAGCTTACTGATGTGTTCTTT
TTCCAAATATTATTAGCTTTTTCTTATGATTACTCTCTTTGAAGCTTATC
CATTTATGATAGGGTTAGACTGCATTGTTCTTAGTTTCATATGGCATTAT
TAGAATTTGAAAATTTTGATCGTTCTAGGAGAGGAAAGTTAAGACTCGCA
ACACCACACCTCAGTCTTCTAACTCGTCGTTTATAGTCAGCAGTCTGAAA
TATGTGGAAAATTTCTCCAGCCCTTACGTGAAGCTTGTAGTCGTTTGTAA
AATCTGCAGCAAAGAACAAACAATGACCAATGCTGGGAACTGGAAACAAC
ATTATTTCACTCACGTTAGTGAAGAAGAGAAGCCTCACAGATGTGACATT
TGCAACAAAGGTTTCATCACGGCCCCCCAATTAAAAAGACATTTGAAGCA
GCACGAGAAGAAAGCCAAAAAAGAGGAGAAGATACAACTCCCAAGTCAAT
TACCAGAACAGCGACCTCAAATTCAAGAACACATACCGTCACATCATCAA
CAACATTTCCTAAATAATCAATTCTTTCCCGGTCTTAAGAACGAGTTGTA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052841-exon-scaffold_220-1575043694:158057..160761 | TCONS_00052841-exon-scaffold_220-1575043694:158057..160761 | Clytia hemisphaerica | exon |
| TCONS_00052841-exon-scaffold_220-1575043694:157211..157461 | TCONS_00052841-exon-scaffold_220-1575043694:157211..157461 | Clytia hemisphaerica | exon |
| TCONS_00052841-exon-scaffold_220-1510915933:158057..160761 | TCONS_00052841-exon-scaffold_220-1510915933:158057..160761 | Clytia hemisphaerica | exon |
| TCONS_00052841-exon-scaffold_220-1510915933:157211..157461 | TCONS_00052841-exon-scaffold_220-1510915933:157211..157461 | Clytia hemisphaerica | exon |
| TCONS_00052841-exon-scaffold_220-1491911889:158057..160761 | TCONS_00052841-exon-scaffold_220-1491911889:158057..160761 | Clytia hemisphaerica | exon |
| TCONS_00052841-exon-scaffold_220-1491911889:157211..157461 | TCONS_00052841-exon-scaffold_220-1491911889:157211..157461 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_220 | supercontig | scaffold_220:157211..160761 - |
Blast
The following BLAST results are available for this feature:
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