TCONS_00052976 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052976
Unique NameTCONS_00052976
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2042

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052976 ID=TCONS_00052976|Name=TCONS_00052976|organism=Clytia hemisphaerica|type=transcript|length=2042bp
GAACGACTACGCCGACTGGAAGCGGAACATGGGgcTCTAAACCAATGAAA
AACAATGATTTCAGTGACATCTTGAATGCGCAAGGTTTCACCTCGGCCAA
CAAACAATCGGCAACCGGGCAAACACTAAAGCAAATGAAAAACGAAGCAG
AAACTGTCGAAATGGACCCAGTCAAACGGGCTGTGCGCGAGTGGTCAGAC
GGTAAGGAGCGGAACATCCGAGCGCTCATTTCATCGCTACAGTCCATATT
ATGGGAGGAAGCTAAGCAGAAATGGAAACCCATTGGCTTACACGACATCA
TGCAAGGGAACAAGGTTAAAACATATTATCGTAAAGCATGCTTGGCTGTT
CATCCTGACAAGCACATGGGCACGGAAAACGAGCAACTGGCGCGTGCTAT
CTTCTTAGAACTTAACGAAGCTATGACTTTATTCGAAGAAAAGGGATCAC
AAAATATGTTTTAAGATTTATAATAGACAATACCAAAAAATTAttagttt
atttattttttttaacgaattttaatCATTTCGAATCTTTATGAATGTAT
ATGTTGGATGGATATGCTTAAGTTTTAATTGCTCTCACCGATTGCGTCAG
CTGAGAAAACTTAGACATAAAATGGAACGTCTTTATCGGGTTATTTGAAA
ACCGCTATGGGTGAATACACGTATTTCCTATTagcggattcatgtaaaaa
aagtcacgaaaaacgtcgagaaagtctctgattggctgaaatattgcata
tacaggcaaatttttcaaaatgtccagagtatgaggtaatctttgcatgc
ctccgccaatcaaaagtttgtttactcgacgttttttggtgacttttgca
tgaatctgctaataggaaataggtgTATTATAAAAAGTCAGAAATAACTG
AGATAATCCGGCCGTGTGGGGTCCACCCTGATTTTACTTGTTATTTTAAA
AACGCCTTTATTTTGAAGGGGCTAAATTTTGATTCGACTGACCCCGAATG
GACCATATTGATAGAACCTAGTAAAATAAGATTTTGAGTATACAATCCAA
CTGATCCAAATTTTTTGCACTGGGGAGCACCTAACAAATAAACATGATAT
TCATTGCACTGTCAAATACTATTGGCACACATCAAATAATTGACAAATAG
ATAAATAGTTTTCGTTTTTGACTATCAAAAGCTTTTCGGataatttttat
ttgcttgtaAAAAGcttcattgaaaaaaatatcaatgacgaagtattttt
gaataaggcttgataatttaaaatttctcaatttgtaatatatatttttc
tcgtCTCACTACATAATTTTTTCTGGGGTACATACATTTTTCATATGGTA
ATGCCTTTTCTTTTACTCTTTTTTTTCGATGACACTTTGATCTTTAAGAG
ATCTTGATTGACAAATCTTTAATTTTTCCTCGAATTGTGCTTAAATTTAA
ATTGTTGTGAATTCTATGGAATGGGTGTAATGGTGTAATGAAAATACTCC
GTTAAGAGGCGATGTATTGACGGGGAATTGACAATCCGTCTGTATTGGTT
TTCGCTCTAAGGTTTCTTCCGAAGTTGAAATCGTAATTATTCAAAACTCG
GATGCTTTAGAGGGACAAGAGGACTGAAGTACATAATGATAATTTTCTCT
GTTAATTCctctcatcaaaattatttttttataaatgaacTGAATATCTA
CTTGTGGCTTAGTGAGtacttttttttacaagaagttTGTGGCATTAAAA
GTCTTTCTGCGAAGTTTAGTGTAGTCTTTGTTGTAGCCTTGTTAaatgtt
ttctaatttttacatTACACCGtgaaaaagaaacattcaaggatttgttt
ttaaataagagtgatatcgtttgcttactcatcaattttaattcacaagc
tttttcacattgaattgacacggatgtggagcaagattggtcagaaagag
gaaaaatatcAATAGGCATCACTggcctgatatgaaatatgtgtctgata
taaaacgggaacacttatgtaaaaataagacCTTTAAATGCC
Run BLAST on NCBI

transcript from alignment at scaffold_222:460971..466064-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052976 ID=TCONS_00052976|Name=TCONS_00052976|organism=Clytia hemisphaerica|type=transcript|length=5094bp|location=Sequence derived from alignment at scaffold_222:460971..466064- (Clytia hemisphaerica)
GAACGACTACGCCGACTGGAAGCGGAACATGGGGTAAGCACATTGATTTC
AAAGCCCCGAAGGGGCTAGATCCGAAACTCCTGGGTTGGAAACGAAGCCA
CTTATTTCCCATCCAGAACACGTGGTCCTTGTGTGTTTTAACAAAATTTC
TAAATACGGGGCAAACTTAAGGCTTCGCTTTTTCTTGCTTGAGAAAGGCT
GGAGATTCCTCTCTATAGCCTCTTCGGGGCCTTCAAACTCAATAGGTAAG
AATATAGAGCAAGCTTTTTGTTTCTTTCTAAACGTGGAATAGTGTGTATA
CCAGTATTTAAGTATGGTATAAGACCAGTTGCGTTGCAGATGATATGACA
GGTCTACTCCTTTCCTCCTCTCTTTAGTGCATGCTCAAGAATTCAATACT
CAATACTTTCGTCCGGAATCGTGTCCAGAATCGTATAAGATTTCGGATAT
CTTTTCAAAATGTAGCGGAAATCAGACTACTACATTAAACGTATCCTGAG
TGGATAAAATTTCTGCTTTGATTTTTTCCGCAAATCAAGAATATAAGATT
TATTTGTTAGCTCGATTTCATTTTTTTTATTTTCCTGCTGGTTTTGGCCT
AAACTCGGATTTCTAATTTGAGAGTCGATTGACGCGGAATAAGTTCATTC
ATTGTGTGTAAACGTCGTAACTTCTAGTTTTAATTTCTTCTTTTTTTAGG
CTCTAAACCAATGAAAAACAATGATTTCAGTGACATCTTGAATGCGCAAG
GTTTCACCTCGGCCAACAAACAATCGGCAACCGGGCAAACACTAAAGCAA
ATGAAAAACGAAGCAGAAACTGTCGAAATGGACCCAGTCAAACGGGCTGT
GAGTGTTTTAATATGACACCTTTGGGTAATTGATTAGAGGGTGCCTATTT
CTTGTTTCCCTCCTTTGTGTTTATTCGCCATTAACGCCATTGCACCATTG
CGATTTTTTCAATTCAGGATTCTCTCTCTAAATCCGGCTTCTTTGACTGC
TGATTCAATGTCAAATTTAGAGTATCCTCTTTGTTCCCTTCGAGTAGTGG
TGCCTGAACAAGTATTATGGTTTTTCTGCACAGCCAAGCCCTACAGTCTG
TTCCTCTAAAGAATCCTGCATTGTAAGATGTATGCGTAATTTGTCATTCT
TTTTTAAAACATATGTAGTTAATTGCTGCGGTAAACAGAGAGGAATGAAT
ACGTAGGGGTGGTACAGCTACTTTTTCTGGGTTGTGGATGGCGACATTTG
TCGTTCTTTATGAAATTTGTCGTTCTTTTGTCCATTTTTTAGTAAATATA
GGATTCTTTTATATAAACCCCCTCCCCTATCATGCAGATTTACATGGGAG
TATAACAGAAACAGAACTCCTCATGCTGCCTGTCATAAATCTATTAAAAA
ATTTTTATAATGCAGTCTCATAAAAAAGGCGAGGTGCCTTAACAGCTCAT
GCTTGTTTAAGAGGGACCTAAATTAAATGAAAGATCTCTCCCTTTCCCAC
GCTAGGTGCGCGAGTGGTCAGACGGTAAGGAGCGGAACATCCGAGCGCTC
ATTTCATCGCTACAGTCCATATTATGGGAGGAAGCTAAGCAGAAATGGAA
ACCCATTGGCTTACACGACATCATGCAAGGGAACAAGGTTAGTGAAGTTT
ATAATATTTTATATGTCTTAGAATTGAGGTTGAAGGTTTCAGTTTTTTAT
GTCAGATTGTACGCGAGGCTGGGATAAAGTTTGTCTTTTTTAGAAATTGG
AGTACTAACTAAGGAAAAATTCGAAAATTAGTATTTGATTACATTAGTTC
CTGAATGAAGCAATGTTAGGGAATGAAAAGTGAAAAGAGTTTATTATATG
GACAAAGTATATTACAAGCACATAAAACTGACACCTAAGCCTGAACAACC
ATTCATGCACGAACGAAAAACTCGCACAATATAGTACAAATGCACGGACG
CATCACACAATTAACCAAGCTCAAACCAAGAAGTGAAACTCAGGAAATCA
AAAAGGCAGAACCACTAGGTAGACTGAACAACTGTTGGAAGCATGAAGCA
TGAAAAGTTTTCCTTGCCATTTTTGCCAAGTCAAAAAAAGAAATCACATG
AATGAAGGAAGAGAAAAAGTGAAAAGATAAGCGAATGCGCATTGACATTT
TGACAGAAGAGCTGCAAGTGCAAGTCACAGAGAGTACGTATTTATTTGGG
ACAGGCTGGAGTTTTTACAAGCTTTTATTTGATTTGGTTGGTCGTTAAGA
TGTAATAAAAGAATCTTATTACTTTTTCTAAAGAACGCGTCATCTCTATC
ACTTTAAATNGCAGAAATGGAAACCCATTGGCTTACACGACATCATGCAA
GGGAACAAGGTTAGTGAAGTTTATAATATTTTATATGTCTTAGAATTGAG
GTTGAAGGTTTCAGTTTTTTATGTCAGATTGTACGCGAGGCTGGGATAAA
GTTTGTCTTTTTTAGAAATTGGAGTACTAACTAAGGAAAAATTCGAAAAT
TAGTATTTGATTACATTAGTTCCTGAATGAAGCNATTTCAAGCAATTCTT
GATATTCATGATGTAATCTTTTATACGGAAACACACGAAAAACACCGGGC
GTTTGCCACCAGTTTCATTATTTAAATGCAAACGCCCGGTGTTTTTGCGG
CTGTTTCCGTATGAATATCAAGAATACATCAGGATTTCTACAATCAAACC
GACGTTTAAAAAAATTTATTTCCTCTTCGAGAATGATTCCCTTCAAGACT
TTTCTTCTTCTATCATAGGTTAAAACATATTATCGTAAAGCATGCTTGGC
TGTTCATCCTGACAAGGTGAGGAGAAACATTTGTTGTACTATTGTTTTTT
TTTACTATTGGTCTTGACCCACCCTCTAGGGCTCCCTCTAGACCTTGTCA
TGGACAAGAAGGTTTCATTCAAATCCCGTCTAACGAGCGAATATTTTTCA
TCCTTTATTAAATGGTATCCATTCCACATAATTAACACTTACATCATCAC
AACTAGTCCTCTCTGTAAGTGTAAGTGTCTTCAGAGGTGACTGTAACAGT
CAAAAATGGACTAGGTCGGATTTGTTCGAGTTATAAGGGTCCCTTTTTTA
AACTCTTTGTAAGTCTACTCAAATAGGTAAAAAAACATAAATTAGCGATT
GTGTTTCTGACAGGGTCCCAAAATTACAAAATATCAAAAATCGATGCCCT
CATACGGTCATAAATTTTTGCAATTTAAAAATGTTGGCTGAAAATTGGAA
AAATAGTCCCTGAAAGGGTTTTAAAAAACTTCCGAAAATTAATCTCTCAA
AGGATCTATTTTCAGACTTAGCTCGAAGATACCCGCCACCTCGCAAATTT
AGTACCCCCGGGCTCTTTGTACGGTTTTCTTGACTACATTATTTTCTTTT
CTTTTCACTTTCAGCACATGGGCACGGAAAACGAGCAACTGGCGCGTGCT
ATCTTCTTAGAACTTAACGAAGCTATGACTTTATTCGAAGAAAAGGGATC
ACAAAATATGTTTTAAGATTTATAATAGACAATACCAAAAAATTATTAGT
TTATTTATTTTTTTTAACGAATTTTAATCATTTCGAATCTTTATGAATGT
ATATGTTGGATGGATATGCTTAAGTTTTAATTGCTCTCACCGATTGCGTC
AGCTGAGAAAACTTAGACATAAAATGGAACGTCTTTATCGGGTTATTTGA
AAACCGCTATGGGTGAATACACGTATTTCCTATTAGCGGATTCATGTAAA
AAAAGTCACGAAAAACGTCGAGAAAGTCTCTGATTGGCTGAAATATTGCA
TATACAGGCAAATTTTTCAAAATGTCCAGAGTATGAGGTAATCTTTGCAT
GCCTCCGCCAATCAAAAGTTTGTTTACTCGACGTTTTTTGGTGACTTTTG
CATGAATCTGCTAATAGGAAATAGGTGTATTATAAAAAGTCAGAAATAAC
TGAGATAATCCGGCCGTGTGGGGTCCACCCTGATTTTACTTGTTATTTTA
AAAACGCCTTTATTTTGAAGGGGCTAAATTTTGATTCGACTGACCCCGAA
TGGACCATATTGATAGAACCTAGTAAAATAAGATTTTGAGTATACAATCC
AACTGATCCAAATTTTTTGCACTGGGGAGCACCTAACAAATAAACATGAT
ATTCATTGCACTGTCAAATACTATTGGCACACATCAAATAATTGACAAAT
AGATAAATAGTTTTCGTTTTTGACTATCAAAAGCTTTTCGGATAATTTTT
ATTTGCTTGTAAAAAGCTTCATTGAAAAAAATATCAATGACGAAGTATTT
TTGAATAAGGCTTGATAATTTAAAATTTCTCAATTTGTAATATATATTTT
TCTCGTCTCACTACATAATTTTTTCTGGGGTACATACATTTTTCATATGG
TAATGCCTTTTCTTTTACTCTTTTTTTTCGATGACACTTTGATCTTTAAG
AGATCTTGATTGACAAATCTTTAATTTTTCCTCGAATTGTGCTTAAATTT
AAATTGTTGTGAATTCTATGGAATGGGTGTAATGGTGTAATGAAAATACT
CCGTTAAGAGGCGATGTATTGACGGGGAATTGACAATCCGTCTGTATTGG
TTTTCGCTCTAAGGTTTCTTCCGAAGTTGAAATCGTAATTATTCAAAACT
CGGATGCTTTAGAGGGACAAGAGGACTGAAGTACATAATGATAATTTTCT
CTGTTAATTCCTCTCATCAAAATTATTTTTTTATAAATGAACTGAATATC
TACTTGTGGCTTAGTGAGTACTTTTTTTTACAAGAAGTTTGTGGCATTAA
AAGTCTTTCTGCGAAGTTTAGTGTAGTCTTTGTTGTAGCCTTGTTAAATG
TTTTCTAATTTTTACATTACACCGTGAAAAAGAAACATTCAAGGATTTGT
TTTTAAATAAGAGTGATATCGTTTGCTTACTCATCAATTTTAATTCACAA
GCTTTTTCACATTGAATTGACACGGATGTGGAGCAAGATTGGTCAGAAAG
AGGAAAAATATCAATAGGCATCACTGGCCTGATATGAAATATGTGTCTGA
TATAAAACGGGAACACTTATGTAAAAATAAGACCTTTAAATGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033454XLOC_033454Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052976-exon-scaffold_222-1575043694:466032..466064TCONS_00052976-exon-scaffold_222-1575043694:466032..466064Clytia hemisphaericaexon
TCONS_00052976-exon-scaffold_222-1575043694:465217..465365TCONS_00052976-exon-scaffold_222-1575043694:465217..465365Clytia hemisphaericaexon
TCONS_00052976-exon-scaffold_222-1575043694:464428..464559TCONS_00052976-exon-scaffold_222-1575043694:464428..464559Clytia hemisphaericaexon
TCONS_00052976-exon-scaffold_222-1575043694:463249..463296TCONS_00052976-exon-scaffold_222-1575043694:463249..463296Clytia hemisphaericaexon
TCONS_00052976-exon-scaffold_222-1575043694:460971..462650TCONS_00052976-exon-scaffold_222-1575043694:460971..462650Clytia hemisphaericaexon
TCONS_00052976-exon-scaffold_222-1510915933:466032..466064TCONS_00052976-exon-scaffold_222-1510915933:466032..466064Clytia hemisphaericaexon
TCONS_00052976-exon-scaffold_222-1510915933:465217..465365TCONS_00052976-exon-scaffold_222-1510915933:465217..465365Clytia hemisphaericaexon
TCONS_00052976-exon-scaffold_222-1510915933:464428..464559TCONS_00052976-exon-scaffold_222-1510915933:464428..464559Clytia hemisphaericaexon
TCONS_00052976-exon-scaffold_222-1510915933:463249..463296TCONS_00052976-exon-scaffold_222-1510915933:463249..463296Clytia hemisphaericaexon
TCONS_00052976-exon-scaffold_222-1510915933:460971..462650TCONS_00052976-exon-scaffold_222-1510915933:460971..462650Clytia hemisphaericaexon
TCONS_00052976-exon-scaffold_222-1491911889:466032..466064TCONS_00052976-exon-scaffold_222-1491911889:466032..466064Clytia hemisphaericaexon
TCONS_00052976-exon-scaffold_222-1491911889:465217..465365TCONS_00052976-exon-scaffold_222-1491911889:465217..465365Clytia hemisphaericaexon
TCONS_00052976-exon-scaffold_222-1491911889:464428..464559TCONS_00052976-exon-scaffold_222-1491911889:464428..464559Clytia hemisphaericaexon
TCONS_00052976-exon-scaffold_222-1491911889:463249..463296TCONS_00052976-exon-scaffold_222-1491911889:463249..463296Clytia hemisphaericaexon
TCONS_00052976-exon-scaffold_222-1491911889:460971..462650TCONS_00052976-exon-scaffold_222-1491911889:460971..462650Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_222supercontigscaffold_222:460971..466064 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0381424	0	0.0479853	0.0980959	0.10567	0	0.0252029	0.022211	0.0709822	0	0	0	0	0	0	0	0	0	0	0.034936	0.0317975	0	0	0	0
Blast
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BLAST of TCONS_00052976 vs. Swiss-Prot (Human)
Match: AUXI (Putative tyrosine-protein phosphatase auxilin OS=Homo sapiens GN=DNAJC6 PE=1 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 6.009e-31
Identity = 63/138 (45.65%), Postives = 92/138 (66.67%), Query Frame = 3 
Query:   48 KNNDFSDILNAQGFTSANKQSATGQTLKQMKNEAETVEMDPVKRAVREWSDGKERNIRALISSLQSILWEEAKQKWKPIGLHDIMQGNKVKTYYRKACLAVHPDKHMGTENEQLARAIFLELNEAMTLFEEKGSQNMF 461
            K  DF D+L+ QGF +A+K     +T+ +M+ E    EMDP K  + EW +GKERNIRAL+S++ ++LW   + KWKP+G+ D++   +VK  YRKA L VHPDK  G   EQ A+ IF+ELN+A + FE +G + ++
Sbjct:  778 KAADFEDLLSGQGF-NAHKDKKGPRTIAEMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWA-GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 913
The following BLAST results are available for this feature:
BLAST of TCONS_00052976 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AUXI6.009e-3145.65Putative tyrosine-protein phosphatase auxilin OS=H... [more]
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