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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053145 ID=TCONS_00053145|Name=TCONS_00053145|organism=Clytia hemisphaerica|type=transcript|length=1409bpRun BLAST on NCBI transcript from alignment at scaffold_226:326764..346724+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053145 ID=TCONS_00053145|Name=TCONS_00053145|organism=Clytia hemisphaerica|type=transcript|length=19961bp|location=Sequence derived from alignment at scaffold_226:326764..346724+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00053145 vs. Swiss-Prot (Human)
Match: EPS8 (Epidermal growth factor receptor kinase substrate 8 OS=Homo sapiens GN=EPS8 PE=1 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 2.186e-43 Identity = 106/330 (32.12%), Postives = 174/330 (52.73%), Query Frame = 1
Query: 1 EILNKCIEEIENFVVMLKRINEARXXXXXXXXXXXXXXXI--ENILILQSQPPPDHRIFDIYQKFKHSLNLLGKLHPHISEPNAPELIHYLFIPLGIIVKVTGI-ERARSVVEPLLTLTAVELLGNCLDSREYHFWQSLGPNWTLTKNAEPFKDRYFQPYSPVFIDGWVPPEI----VTPQQE-----AAATSIARMQQGQEYSKESGQSSTVIQAAMKFKKFLKPKYPEDDVMLKRSSNSDGAIKTNQVDGNPALRNNSFNN------KLKV---RYGIVVYDYLAHNNKELTIHAGEKVEVIDNSRRWWLVKNTHGDQGYVPSTVLEI 927
+ILN +++IE F+ L++ EA +L +K K+K E +L L+++PPP D +QKFKH NLL KL HI P+A +L+H+LF PL ++V+ TG E A SV+ PLL ++ L ++ E W SLG W + AE K+++ PY P F +GW PP + T +Q+ + ++A Q+ QE + S + S+V + +P D + + G+ +Q + A + S + LK +Y YD++A NN EL++ + +E++D+ ++WW V+N GD G+VP+ +L+I
Sbjct: 271 QILNHILDDIEFFITKLQKAAEAFSELSKRKKNKKGKRKGPGEGVLTLRAKPPPPDEFLDCFQKFKHGFNLLAKLKSHIQNPSAADLVHFLFTPLNMVVQATGGPELASSVLSPLLNKDTIDFLNYTVNGDERQLWMSLGGTW-MKARAEWPKEQFIPPYVPRFRNGWEPPMLNFMGATMEQDLYQLAESVANVAEHQRKQEIKRLSTEHSSVSEY-----------HPADGYAFSSNIYTRGS-HLDQGEAAVAFKPTSNRHIDRNYEPLKTQPKKYAKSKYDFVARNNSELSVLKDDILEILDDRKQWWKVRNASGDSGFVPNNILDI 587 The following BLAST results are available for this feature:
BLAST of TCONS_00053145 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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