TCONS_00057860 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057860
Unique NameTCONS_00057860
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length225

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057860 ID=TCONS_00057860|Name=TCONS_00057860|organism=Clytia hemisphaerica|type=transcript|length=225bp
GAAAAATCTTACGGAGTTTGAGTTTTGTCAATCTAGACGTCTCTAACACA
AAATTGAGTACATTCTTTCGATAAGCATACTGATGAATAATGGACTTTTT
GTATCTTCTTCCCATATCATGAAATCGCCATCTTTGGTCATCATTGGAGA
ATCTGTTATGTTGTCATCGATTATGATTCTGATTGTGTTGTTGAATGTAA
ACGGTGGCTGGTTGAAGTCAGGTTC
Run BLAST on NCBI

transcript from alignment at scaffold_3:14354..14578

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057860 ID=TCONS_00057860|Name=TCONS_00057860|organism=Clytia hemisphaerica|type=transcript|length=225bp|location=Sequence derived from alignment at scaffold_3:14354..14578 (Clytia hemisphaerica)
GAACCTGACTTCAACCAGCCACCGTTTACATTCAACAACACAATCAGAAT
CATAATCGATGACAACATAACAGATTCTCCAATGATGACCAAAGATGGCG
ATTTCATGATATGGGAAGAAGATACAAAAAGTCCATTATTCATCAGTATG
CTTATCGAAAGAATGTACTCAATTTTGTGTTAGAGACGTCTAGATTGACA
AAACTCAAACTCCGTAAGATTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036477XLOC_036477Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057860-exon-scaffold_3-1491911889:14354..14578TCONS_00057860-exon-scaffold_3-1491911889:14354..14578Clytia hemisphaericaexon
TCONS_00057860-exon-scaffold_3-1510915933:14354..14578TCONS_00057860-exon-scaffold_3-1510915933:14354..14578Clytia hemisphaericaexon
TCONS_00057860-exon-scaffold_3-1575043694:14354..14578TCONS_00057860-exon-scaffold_3-1575043694:14354..14578Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:14354..14578 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.28746	2.23063	0	1.26694	18.5086	14.6257	29.4089	27.5322	3.85519	20.1408	8.11125	2.28515	17.4951	11.0593	15.5867	16.03	5.15156	9.41068	7.29486	15.2671	1.10582	3.23629	1.31138	0	0	1.09593	0	0	1.26945	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057860 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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