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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053446 ID=TCONS_00053446|Name=TCONS_00053446|organism=Clytia hemisphaerica|type=transcript|length=2608bp
aNCAACATACGGAAATCTCACACTTGAAGtttcaaaaggaaatttttgga
aactattggaaactttcttattttgacAGAACTTTCAAAACGAAGGTTTA
TACACGGATTAATAATtacaatcaattaatcaatgttgtaaaaatgtaaa
agaatGATAAAAGTTGGTCGAGNtatggctagtttatgagtttacgacaa
atgaattggtggaataaagaattgattttaaaccgcttagtcagatacgt
gtaagttataattgttctctgggtctacactttcgttgtgtatgtggcat
ctttagatgaaacttgagacccgctttcataaaaaactttacgtatggct
agtATTAGGGTTTACGACAAATAAATNTAGCTCTCagactttgaaatttc
ttgataTGAAGGAAAGAATCACACAGTTAGTTAAGTACAAGTTTCTTGTC
TGTTTAGAGCAATTCTTTTTGTCCATGTTCTGTTTAATCCTATTTCTTTG
AAGTAATATTTTAATACAGTNCTGTAAATTTGTGGaagaaagaattgatt
ttaaaccgcttAGTCAAATACTTGTAAGTTTTAATTGTTCCCTGGGTCTA
CACAtttgttgtgtatgtggcatcttttgatgaaacttgagacccgcttt
cataaaaaactttacatatggctagtttatgagtttacgacaaatgaatt
tgtggaataaagaattgattttaaacggCTTAGTCAGATACGTGTAAGTT
ATAATTGTTCTCTGGGTCTACACTTTTGTTGTGACGTATGTGGCATCTTc
tgatgaaacttgagacccgcttcattaaaatcttttacgtatggctagtt
GATGAGTTTACaacaaatgaatttgtggaataaagaattgattttaaacc
gcttagtcagatacgtgtaagttataattgttccctgggtctacacattt
gttgtgtatgtggcatcttttgatgaaacttgagacccgctttcataaaa
aactttgcGTATGGCTAGTTGatgagtttacgacaaatgaatttgtggaa
taaaaagaattgattttaaacaaCTTAGTCAGATACGTGTAAGTTATAAT
TGTTGTCTGGGTCTAcacttttgttgttgttgtgtatGTGTTATCTTctg
atgaaacttgagacctgttttcataaaaaactatACGTATGGCAAGTTTA
TGAGTTTatgacaaatgaatttgtggaatataaagaattgattttaaaca
aCTTAATCAGATACGTGTAAGTTATAATTGTTCTCTGGGTCTACACAttt
gttgtgtatgtggcatcttttgatggaacttgagacccgctttcataaaa
aactttacgtatggctagtttatgagtttacgacaaatgaatttgtggaa
gaaagaattgattttagTCAAATACGTGTAAGTTTCAATTGTTCCCTGGG
TCTGCACATTTGTTGTTTATGtggcatcttttgatgaaacttgagacccg
ctttcataaaaaactttacgtatggctagtttatgagtttacgacaaatg
aatttgtggNTGGAATTAGAGCTGTAATTCCTAAAAAgagCTCCTTTGAC
GATGCTTAGGTGAATTGATCAGTCAATATGGAACTCAAAATGGATGAATG
CGATACTGCCAATGGAATTACGAACTAACAAATATGGTGGACCTGGGTGG
ACTATCATCTTTTTCGAAATCTTGATGACACGCCAAAAACTCAGAAAGTT
TTTCAAGCCACAACCAAAAGAAACCTTATCCAATTTTATCCAATTCGAAG
AAGTCTTATTTTATTACCTTTCTGAAACTTAAGAATCGTTCACGGctcaa
aattaaaacattttgaaaatcacgaggcttatttatttaatttatttaaa
agaCAACTCGTTTGAAAGAATATAgtcaattttatatattttaatttatt
tattcgcAGTAATATATTTCCCATATCAATCTTTATCAACTAAATCATTC
TTAACATTTACAAGTTATGGAGATCATTTTTGTCCTGTGCTTAAAAGATA
AAGTCGTGACATGAATGTTCTGGTTCTTACAAAGAGTCCCTCTTNACCTT
TCTGAAACTTAAGAATCGTTCACGGctcaaaattaaaacattttgaaaat
cacgaggcttatttatttaatttatttaaaagaCAACTCGTTTGAAAGAA
TATAgtcaattttatatattttaatttatttattcgcAGTAATATATTTC
CCATATCAATCTTTATCAACTAAATCATTCTTAACATTTACAAGTTATGG
AGATCATTTTTGTCCTGTGCTTAAAAGATAAAGTCGTGACATGAATGTTC
TGGTTCTTACATAGAGTCCCTCTTGATGCATTGTCATTTCTAAAAACGAT
gcacatttgaaaatttcaatcatatttggtattttgataaaatgtaTTCT
TTCTTTCCTACTTGTAGCTTTATGttctatatatatattttttttgtata
gACTTTCTATGGTATGATGATGAGAAAATAAATGTAATATGAACGTATAA
TTTATAAATGTCTACAATTTTCTTAAAGCATTATAGGCCGTTGTATTTAT
TGGATATT Run BLAST on NCBI transcript from alignment at scaffold_231:348346..351152+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053446 ID=TCONS_00053446|Name=TCONS_00053446|organism=Clytia hemisphaerica|type=transcript|length=2807bp|location=Sequence derived from alignment at scaffold_231:348346..351152+ (Clytia hemisphaerica)
aNCAACATACGGAAATCTCACACTTGAAGtttcaaaaggaaatttttgga
aactattggaaactttcttattttgacAGAACTTTCAAAACGAAGGTTTA
TACACGGATTAATAATtacaatcaattaatcaatgttgtaaaaatgtaaa
agaatGATAAAAGTTGGTCGAGNtatggctagtttatgagtttacgacaa
atgaattggtggaataaagaattgattttaaaccgcttagtcagatacgt
gtaagttataattgttctctgggtctacactttcgttgtgtatgtggcat
ctttagatgaaacttgagacccgctttcataaaaaactttacgtatggct
agtATTAGGGTTTACGACAAATAAATNTAGCTCTCagactttgaaatttc
ttgataTGAAGGAAAGAATCACACAGTTAGTTAAGTACAAGTTTCTTGTC
TGTTTAGAGCAATTCTTTTTGTCCATGTTCTGTTTAATCCTATTTCTTTG
AAGTAATATTTTAATACAGTNCTGTAAATTTGTGGaagaaagaattgatt
ttaaaccgcttAGTCAAATACTTGTAAGTTTTAATTGTTCCCTGGGTCTA
CACAtttgttgtgtatgtggcatcttttgatgaaacttgagacccgcttt
cataaaaaactttacatatggctagtttatgagtttacgacaaatgaatt
tgtggaataaagaattgattttaaacggCTTAGTCAGATACGTGTAAGTT
ATAATTGTTCTCTGGGTCTACACTTTTGTTGTGACGTATGTGGCATCTTc
tgatgaaacttgagacccgcttcattaaaatcttttacgtatggctagtt
GATGAGTTTACaacaaatgaatttgtggaataaagaattgattttaaacc
gcttagtcagatacgtgtaagttataattgttccctgggtctacacattt
gttgtgtatgtggcatcttttgatgaaacttgagacccgctttcataaaa
aactttgcGTATGGCTAGTTGatgagtttacgacaaatgaatttgtggaa
taaaaagaattgattttaaacaaCTTAGTCAGATACGTGTAAGTTATAAT
TGTTGTCTGGGTCTAcacttttgttgttgttgtgtatGTGTTATCTTctg
atgaaacttgagacctgttttcataaaaaactatACGTATGGCAAGTTTA
TGAGTTTatgacaaatgaatttgtggaatataaagaattgattttaaaca
aCTTAATCAGATACGTGTAAGTTATAATTGTTCTCTGGGTCTACACAttt
gttgtgtatgtggcatcttttgatggaacttgagacccgctttcataaaa
aactttacgtatggctagtttatgagtttacgacaaatgaatttgtggaa
gaaagaattgattttagTCAAATACGTGTAAGTTTCAATTGTTCCCTGGG
TCTGCACATTTGTTGTTTATGtggcatcttttgatgaaacttgagacccg
ctttcataaaaaactttacgtatggctagtttatgagtttacgacaaatg
aatttgtggNTGGAATTAGAGCTGTAATTCCTAAAAAGTaagactttttt
taatttttgtcttttcacaataaaatttttatttctttcgaGAATATTGC
TGTCTTTCTTTCCAATGTTTAATTTGATGTCTATTTATTTTACTGTTTAA
GtctttaaagaaagtttttataTGATTTGGATAGCCATTTATTTTCCAAG
TAGATAGTAATCaaacttattaatttttttttataggagCTCCTTTGACG
ATGCTTAGGTGAATTGATCAGTCAATATGGAACTCAAAATGGATGAATGC
GATACTGCCAATGGAATTACGAACTAACAAATATGGTGGACCTGGGTGGA
CTATCATCTTTTTCGAAATCTTGATGACACGCCAAAAACTCAGAAAGTTT
TTCAAGCCACAACCAAAAGAAACCTTATCCAATTTTATCCAATTCGAAGA
AGTCTTATTTTATTACCTTTCTGAAACTTAAGAATCGTTCACGGctcaaa
attaaaacattttgaaaatcacgaggcttatttatttaatttatttaaaa
gaCAACTCGTTTGAAAGAATATAgtcaattttatatattttaatttattt
attcgcAGTAATATATTTCCCATATCAATCTTTATCAACTAAATCATTCT
TAACATTTACAAGTTATGGAGATCATTTTTGTCCTGTGCTTAAAAGATAA
AGTCGTGACATGAATGTTCTGGTTCTTACAAAGAGTCCCTCTTNACCTTT
CTGAAACTTAAGAATCGTTCACGGctcaaaattaaaacattttgaaaatc
acgaggcttatttatttaatttatttaaaagaCAACTCGTTTGAAAGAAT
ATAgtcaattttatatattttaatttatttattcgcAGTAATATATTTCC
CATATCAATCTTTATCAACTAAATCATTCTTAACATTTACAAGTTATGGA
GATCATTTTTGTCCTGTGCTTAAAAGATAAAGTCGTGACATGAATGTTCT
GGTTCTTACATAGAGTCCCTCTTGATGCATTGTCATTTCTAAAAACGATg
cacatttgaaaatttcaatcatatttggtattttgataaaatgtaTTCTT
TCTTTCCTACTTGTAGCTTTATGttctatatatatattttttttgtatag
ACTTTCTATGGTATGATGATGAGAAAATAAATGTAATATGAACGTATAAT
TTATAAATGTCTACAATTTTCTTAAAGCATTATAGGCCGTTGTATTTATT
GGATATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053446-exon-scaffold_231-1491911889:348346..349932 | TCONS_00053446-exon-scaffold_231-1491911889:348346..349932 | Clytia hemisphaerica | exon |
| TCONS_00053446-exon-scaffold_231-1510915933:348346..349932 | TCONS_00053446-exon-scaffold_231-1510915933:348346..349932 | Clytia hemisphaerica | exon |
| TCONS_00053446-exon-scaffold_231-1575043694:348346..349932 | TCONS_00053446-exon-scaffold_231-1575043694:348346..349932 | Clytia hemisphaerica | exon |
| TCONS_00053446-exon-scaffold_231-1491911889:350132..351152 | TCONS_00053446-exon-scaffold_231-1491911889:350132..351152 | Clytia hemisphaerica | exon |
| TCONS_00053446-exon-scaffold_231-1510915933:350132..351152 | TCONS_00053446-exon-scaffold_231-1510915933:350132..351152 | Clytia hemisphaerica | exon |
| TCONS_00053446-exon-scaffold_231-1575043694:350132..351152 | TCONS_00053446-exon-scaffold_231-1575043694:350132..351152 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_231 | supercontig | scaffold_231:348346..351152 + |
Blast
The following BLAST results are available for this feature:
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