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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053776 ID=TCONS_00053776|Name=TCONS_00053776|organism=Clytia hemisphaerica|type=transcript|length=1120bp
AGAATCTTTAatgcgaaaatatttttttgaaatgactaagCCGACTGCCA
TTATTAACAATTCCATAAATATTAATACCAGAATACAATAAGTGCCTCGT
AAGTAAGATAAATTCACTACATTGCTCCTCATTGTTCGTAGTTAAACTAC
GACTTTGTGCGCTTCTCCCTCTTTAATTGGGTGTTAACCTGTGTCCACGA
GGGTGAAATTAATTATTTGGCCGTTCTTTCAATTAATGttgattttagta
aaaataaacctttctaaattttaaaattgaattaaaattgtAACATATTA
AATCCATGTAATATACGGtataaacaattaaaaatataaaattaagtata
tcttttctataaaattaaagtaattattttATCCTTAAAACTTTCCTTGT
GTAAGAAATTAACCGTGGTTTTGTGCTCATCTGTTCAAGGGGTTTTGTCT
TGAAAAACTGGTTGAATTAGGATAGTTGTCCAAAGACAAAGGAAATTGTT
AGTCTCTTAACCGGATTCATTACATACCACAGgggaagataaaaaaaaga
cCTTTATAATTTAAACTTTTCCCACCTTTCACTGCACACAGCATAACACC
AAGAGATTTTGTTTTGCTACTACCAGAtccaaaattaatgaaaaatatgA
CTCCAAAGGCCTGAAGGGGCTGAATTTGAATTCTTTCAATGTTAGCATTA
ATTATCTCTAGCCTATCTCTTATAGATCATATTGAGAGAACACTCCTGCC
AGATctgtaaaaataatgaaaacttgTGCATAATTAGAGCCTTAAAATAT
AAACGTTGGAAGGTGAATTGAGATGATTTTGGATATGCTATAAGTCAGCT
ACTACGGGAACAAGtattttttgtcgttttttgtgTCTGGTCTactaaat
caaatttttgccaaagaatttatgtggaaaccactacaatcaaaattata
atttgcaactggaaaaattagttttcatcGATCAAGGAAATTATCTAACA
AGAGAGATCCATCTATCTTTCAAATATTGTGTGCAGAATTTCTGTGTTAC
TGGTTGCCATTATTCAAATCTAATTCGACGAGAAGGTCATTCAACGCCAT
TTTGATTATTCTCTTATCAT Run BLAST on NCBI transcript from alignment at scaffold_233:1171719..1172838 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053776 ID=TCONS_00053776|Name=TCONS_00053776|organism=Clytia hemisphaerica|type=transcript|length=1120bp|location=Sequence derived from alignment at scaffold_233:1171719..1172838 (Clytia hemisphaerica)
ATGATAAGAGAATAATCAAAATGGCGTTGAATGACCTTCTCGTCGAATTA
GATTTGAATAATGGCAACCAGTAACACAGAAATTCTGCACACAATATTTG
AAAGATAGATGGATCTCTCTTGTTAGATAATTTCCTTGATCgatgaaaac
taatttttccagttgcaaattataattttgattgtagtggtttccacata
aattctttggcaaaaatttgatttagtAGACCAGAcacaaaaaacgacaa
aaaataCTTGTTCCCGTAGTAGCTGACTTATAGCATATCCAAAATCATCT
CAATTCACCTTCCAACGTTTATATTTTAAGGCTCTAATTATGCAcaagtt
ttcattatttttacagATCTGGCAGGAGTGTTCTCTCAATATGATCTATA
AGAGATAGGCTAGAGATAATTAATGCTAACATTGAAAGAATTCAAATTCA
GCCCCTTCAGGCCTTTGGAGTcatatttttcattaattttggaTCTGGTA
GTAGCAAAACAAAATCTCTTGGTGTTATGCTGTGTGCAGTGAAAGGTGGG
AAAAGTTTAAATTATAAAGgtcttttttttatcttcccCTGTGGTATGTA
ATGAATCCGGTTAAGAGACTAACAATTTCCTTTGTCTTTGGACAACTATC
CTAATTCAACCAGTTTTTCAAGACAAAACCCCTTGAACAGATGAGCACAA
AACCACGGTTAATTTCTTACACAAGGAAAGTTTTAAGGATaaaataatta
ctttaattttatagaaaagatatacttaattttatatttttaattgttta
taCCGTATATTACATGGATTTAATATGTTacaattttaattcaattttaa
aatttagaaaggtttatttttactaaaatcaaCATTAATTGAAAGAACGG
CCAAATAATTAATTTCACCCTCGTGGACACAGGTTAACACCCAATTAAAG
AGGGAGAAGCGCACAAAGTCGTAGTTTAACTACGAACAATGAGGAGCAAT
GTAGTGAATTTATCTTACTTACGAGGCACTTATTGTATTCTGGTATTAAT
ATTTATGGAATTGTTAATAATGGCAGTCGGcttagtcatttcaaaaaaat
attttcgcatTAAAGATTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053776-exon-scaffold_233-1491911889:1171719..1172838 | TCONS_00053776-exon-scaffold_233-1491911889:1171719..1172838 | Clytia hemisphaerica | exon |
| TCONS_00053776-exon-scaffold_233-1510915933:1171719..1172838 | TCONS_00053776-exon-scaffold_233-1510915933:1171719..1172838 | Clytia hemisphaerica | exon |
| TCONS_00053776-exon-scaffold_233-1575043694:1171719..1172838 | TCONS_00053776-exon-scaffold_233-1575043694:1171719..1172838 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:1171719..1172838 . |
Blast
The following BLAST results are available for this feature:
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