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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053777 ID=TCONS_00053777|Name=TCONS_00053777|organism=Clytia hemisphaerica|type=transcript|length=976bp
aattcaatttttagttttgatgacgtcatcgattatgacgtaataatcag
tttttgcggtttttcacgaaaatcagcgaaaaaacaattaggttacacat
caggttagaaactacatcatattacccttcatgttcagtcatttgtttgg
tcgttttctgtcgactaatgcgatctaaaaattatggtaattttaagaca
tgccataacttacccgagtttAAGAACTATccttaaatttcttataacag
TTTTTTTTAGATAGTGTGGTAGAATAAGCTCCCAAAAAGCTCTAACCTTC
TTTTTATCTAGAAGATCACGATGATGAAAAAATTAGGGATGTTTAGGCCC
CCTGTGGTCTATCTGCATTGGCCTACAATCCGtcatatttcctttagacg
tcATCAGCTATCCACTGAAATGATGGACATTAAAGCGTATTAACTAAGAA
TGACAAGCTAAAGGATTTCAACGGCGCAATCAAGAGATATTCAGCTCATT
TTACGATATTTTAGCTTATTGAGCAAAACTTTAAATCTGAATAAATATCA
CACGGTCTAGCCATTGAAACCCTGTAAACTCAGCTTTTTGTACTACAAGA
TCCATTTTTGTGTCACCtttgaaaatttaagttttACTAAATATCTGATG
ACGTCACGAGAGAATACGCCCGGTTTCGAACCATTTCGGACATTTTAGGG
AGAATAACATACGAATCTTTAAAAACGATCCCTTCTACTGTTATCTACTT
TACGAGATTAGAGTTGAattgaaatttacttttttgtcaaatattttaaa
ttctgTTAGCTTTAATTTGTAGTCTTGATAATATTGAACTTTGATAATTT
CTTATGTTGTCGTTATTaacattaaaaacaaagaaaattgtcaGATCAGG
TGTTTTTAATTGTTAGATTAGAatagattccaaaaaaatacaACTTATCC
TCTATCGATCTTGGTCTAAAATCAAC Run BLAST on NCBI transcript from alignment at scaffold_233:1207922..1208897 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053777 ID=TCONS_00053777|Name=TCONS_00053777|organism=Clytia hemisphaerica|type=transcript|length=976bp|location=Sequence derived from alignment at scaffold_233:1207922..1208897 (Clytia hemisphaerica)
GTTGATTTTAGACCAAGATCGATAGAGGATAAGTtgtatttttttggaat
ctatTCTAATCTAACAATTAAAAACACCTGATCtgacaattttctttgtt
tttaatgttAATAACGACAACATAAGAAATTATCAAAGTTCAATATTATC
AAGACTACAAATTAAAGCTAAcagaatttaaaatatttgacaaaaaagta
aatttcaatTCAACTCTAATCTCGTAAAGTAGATAACAGTAGAAGGGATC
GTTTTTAAAGATTCGTATGTTATTCTCCCTAAAATGTCCGAAATGGTTCG
AAACCGGGCGTATTCTCTCGTGACGTCATCAGATATTTAGTaaaacttaa
attttcaaaGGTGACACAAAAATGGATCTTGTAGTACAAAAAGCTGAGTT
TACAGGGTTTCAATGGCTAGACCGTGTGATATTTATTCAGATTTAAAGTT
TTGCTCAATAAGCTAAAATATCGTAAAATGAGCTGAATATCTCTTGATTG
CGCCGTTGAAATCCTTTAGCTTGTCATTCTTAGTTAATACGCTTTAATGT
CCATCATTTCAGTGGATAGCTGATgacgtctaaaggaaatatgaCGGATT
GTAGGCCAATGCAGATAGACCACAGGGGGCCTAAACATCCCTAATTTTTT
CATCATCGTGATCTTCTAGATAAAAAGAAGGTTAGAGCTTTTTGGGAGCT
TATTCTACCACACTATCTAAAAAAAActgttataagaaatttaaggATAG
TTCTTaaactcgggtaagttatggcatgtcttaaaattaccataattttt
agatcgcattagtcgacagaaaacgaccaaacaaatgactgaacatgaag
ggtaatatgatgtagtttctaacctgatgtgtaacctaattgttttttcg
ctgattttcgtgaaaaaccgcaaaaactgattattacgtcataatcgatg
acgtcatcaaaactaaaaattgaatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053777-exon-scaffold_233-1491911889:1207922..1208897 | TCONS_00053777-exon-scaffold_233-1491911889:1207922..1208897 | Clytia hemisphaerica | exon |
| TCONS_00053777-exon-scaffold_233-1510915933:1207922..1208897 | TCONS_00053777-exon-scaffold_233-1510915933:1207922..1208897 | Clytia hemisphaerica | exon |
| TCONS_00053777-exon-scaffold_233-1575043694:1207922..1208897 | TCONS_00053777-exon-scaffold_233-1575043694:1207922..1208897 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:1207922..1208897 . |
Blast
The following BLAST results are available for this feature:
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