TCONS_00053829 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053829
Unique NameTCONS_00053829
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2156

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053829 ID=TCONS_00053829|Name=TCONS_00053829|organism=Clytia hemisphaerica|type=transcript|length=2156bp
CAATTTAATAAAAGTACGGGTACACCTATACTAGATTATGACATTAAAAG
TGCATTAATAAACTCTCTAAAAAACTTGGAAATTAATGAGCCCGAACACT
GGTTCACAAAGGAGTTGAAGAAATTCATTGATACTAACGAAATATCGGAC
GACGAAAGTTCAGTTTTGAATAAGAACAATTATGATGATTGGATGTCTAA
TGTAAAGCTCATGTACATGCTTGAACATAAACGAAGTAAATTGAGTTCAA
CTCTTTCACCGGCTGAATTTGATAAAAGACTCAGGGAATTACTACCTTTA
TCTGTATTAAAAGGTGAATTGAAAAAAGAGATTCAAAAAGAGGTACGAGA
ATTCATTAGAAAAAATCCACCGAAAAACGACCCTCAAATGgaaacacttt
ttaattttgatctCTCTGAGATTGCAGAGAAAGTGGATCACTGGCTTTTT
GATGAACTACTGTCATCTACAACACAGTTAGAAGATACAGTTGTTCTTTG
TAATACCCCTTTCAACACAGAGATTGCAGGGAGTATGCAAGCCGAATTTG
ATATTCTCATTTTTTGCTGGAAGAGAAAAGTTATAATTGGGATTGAGTGT
AAGCGGACTTTGACTGATTCAGCTTTCGCACAACTAGAAAAGTACCATAA
ATTGTTAGAACAAAGACTAGGTGATCAATTAGGATCAGGGTGGAAATTTT
GGCCAACTGTTTGCGTGGAGCACAATAAAGAAATTAACATTGTAAATAAC
CATTATATTAATATGGAGACAGACATTGAAAATTGGTTGACGGAAGTTTT
GAATCAGCACTTCTTGACTTCTGAGAGAGATATCGTGAATTCAAAAATTC
AAGTTAGGAATGTtctcaaaataatcatattcaTAGCTCATTCAAACAAA
GATAAGCCTATTATTGAATCAAATTGGGTGGATTATGTCAGTAAATCTAT
TGATAAATGTGCAGCTAGAAGTATTTTGTTTTACTCAACAAACCAGTTAC
ATGCTTTAGGATCTACAAATGCTTACAAGAAACTCTTGATTAAGGGTGGA
TTTGGGACAGGTAAAACAGTCTTGCTTCATGACAAAGCATTGCGTTGTAT
TAAAACAGAAGAATATTTTGGAAGGGTCACTTACGTTTGTTTATCACATC
CTCCTAAAAGTCTTCAGAGTTTGTTGTATCACCGATCAAAGAAAGCACTG
GCGGAGAAAGTCGCTGTTCACGAGATAAAAGCGGACGCTGATATTACAAA
AAGATATGAAGAGTTACATACAATCATTGATCAAGGAACGAAAGCTTTAT
TCTTGGACGAGTGGGACATTCATGAAAAATCATCGGAAGAAGATAACATC
ATTCACCAAGTAGAAGTTGAAAAATTGTTGAGGAAATTTGATATCTTATG
GATAGCACCAAGCGCACCAAGTCAAGGGAAAATGAAACAACCGGGTAATC
TGACGTTGGATGGTTTCCAAGTTTTAGATCTAAAATATAATCTAAGAAAT
AGCAAGGAAATTGTTGAGGTAACATCTGAAATTGCTAAAAAGGACGACCA
ATATTGCTATAAAGAGCTTTTGGCTGAGACACCTCCAAATTTTCCGACTG
GCTGTCAACCAAAATATGTTAAAACAATAGAAGAAGGTATAAAAATGGCA
AGAAAAGTGAATAAGAGGGGTGGAATTTTGGTTAACGTTGACCCAACAGA
TGTGAAAGAcgatttgataaattttatggAGAACAATAAAAAACACTTTA
AGACATATTTTTATGAGGAATCTGAAGATTTTGAAGAAGCTTTGAGACGA
AGATATCTGGTGACGAAGAATCGTTATGGGATTAAAAGAGACAAAAGTCC
TTACGACTGTTTACGCGATGGACATATTTTGTTTACTGACAATTCACATA
TTCAAGGTTTTGATTGGCCGACCGTTATTTGTATACAACAGTCACCTCAA
GAAAGGAACGCTAAACATAAATGCAATTATTTCTTAAGATGCACCACCAA
TCTTATCGTTGTGCAccatatttaaaagtttttgtatGACCTTTAACgat
ttttgactgatttttgtaaatttatatttatttatgtaTGGTAAACCTAG
AATTTAACTATGCACATACAGAAATCAGATGATACTCTAAATATTTTAAA
GGCAAG
Run BLAST on NCBI

protein sequence of TCONS_00053829-protein

>TCONS_00053829-protein ID=TCONS_00053829-protein|Name=TCONS_00053829-protein|organism=Clytia hemisphaerica|type=polypeptide|length=674bp
QFNKSTGTPILDYDIKSALINSLKNLEINEPEHWFTKELKKFIDTNEISD
DESSVLNKNNYDDWMSNVKLMYMLEHKRSKLSSTLSPAEFDKRLRELLPL
SVLKGELKKEIQKEVREFIRKNPPKNDPQMETLFNFDLSEIAEKVDHWLF
DELLSSTTQLEDTVVLCNTPFNTEIAGSMQAEFDILIFCWKRKVIIGIEC
KRTLTDSAFAQLEKYHKLLEQRLGDQLGSGWKFWPTVCVEHNKEINIVNN
HYINMETDIENWLTEVLNQHFLTSERDIVNSKIQVRNVLKIIIFIAHSNK
DKPIIESNWVDYVSKSIDKCAARSILFYSTNQLHALGSTNAYKKLLIKGG
FGTGKTVLLHDKALRCIKTEEYFGRVTYVCLSHPPKSLQSLLYHRSKKAL
AEKVAVHEIKADADITKRYEELHTIIDQGTKALFLDEWDIHEKSSEEDNI
IHQVEVEKLLRKFDILWIAPSAPSQGKMKQPGNLTLDGFQVLDLKYNLRN
SKEIVEVTSEIAKKDDQYCYKELLAETPPNFPTGCQPKYVKTIEEGIKMA
RKVNKRGGILVNVDPTDVKDDLINFMENNKKHFKTYFYEESEDFEEALRR
RYLVTKNRYGIKRDKSPYDCLRDGHILFTDNSHIQGFDWPTVICIQQSPQ
ERNAKHKCNYFLRCTTNLIVVHHI
Run BLAST on NCBI

transcript from alignment at scaffold_234:124375..126996-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053829 ID=TCONS_00053829|Name=TCONS_00053829|organism=Clytia hemisphaerica|type=transcript|length=2622bp|location=Sequence derived from alignment at scaffold_234:124375..126996- (Clytia hemisphaerica)
CAATTTAATAAAAGTACGGGTACACCTATACTAGATTATGACATTAAAAG
TGCATTAATAAACTCTCTAAAAAACTTGGAAATTAATGAGCCCGAACACT
GGTTCACAAAGGAGTTGAAGAAATTCATTGATACTAACGAAATATCGGAC
GACGAAAGTTCAGTTTTGAATAAGAACAATTATGATGATTGGATGTCTAA
TGTAAAGCTCATGTACATGCTTGAACATAAACGAAGTAAATTGAGTTCAA
CTCTTTCACCGGCTGAATTTGATAAAAGACTCAGGGAATTACTACCTTTA
TCTGTATTAAAAGGTGAATTGAAAAAAGAGATTCAAAAAGAGGTACGAGA
ATTCATTAGAAAAAATCCACCGAAAAACGACCCTCAAATGGAAACACTTT
TTAATTTTGATCTCTCTGAGATTGCAGAGAAAGTGGATCACTGGCTTTTT
GATGAACTACTGTCATCTACAACACAGTTAGAAGATACAGTTGTTCTTTG
TAATACCCCTTTCAACACAGAGATTGCAGGGAGTATGCAAGCCGAATTTG
ATATTCTCATTTTTTGCTGGAAGAGAAAAGTTATAATTGGGATTGAGTGT
AAGCGGACTTTGACTGATTCAGCTTTCGCACAACTAGAAAAGTACCATAA
ATTGTTAGAACAAAGACTAGGTGATCAATTAGGATCAGGGTGGAAATTTT
GGCCAACTGTTTGCGTGGAGCACAATAAAGAAATTAACATTGTAAATAAC
CATTATATTAATATGGAGACAGACATTGAAAATTGGTTGACGGAAGTTTT
GAATCAGCACTTCTTGACTTCTGAGAGAGATATCGTGAATTCAAAAATTC
AAGTTAGGAATGTTCTCAAAATAATCATATTCATAGCTCATTCAAACAAA
GATAAGCCTATTATTGAATCAAATTGGGTGGATTATGTCAGTAAATCTAT
TGATAAATGTGCAGCTAGAAGTATTTTGTTTTACTCAACAAACCAGTTAC
ATGCTTTAGGATCTACAAATGCTTACAAGAAACTCTTGATTAAGGGTGGA
TTTGGGACAGGTAAAACAGTCTTGCTTCATGACAAAGCATTGCGTTGTAT
TAAAACAGAAGAATATTTTGGAAGGGTCACTTACGTTTGTTTATCACATC
CTCCTAAAAGTCTTCAGAGTTTGTTGTATCACCGATCAAAGAAAGCACTG
GCGGAGAAAGTCGCTGTTCACGAGATAAAAGCGGTAAGTATTTAGTATGT
TCACGATTGTTGGAAGAAAATCTTCTTGACATAAGGTAGGGAAGCGTTAA
AGGATAACCAAAGCTCGTAAAATAACTTTTCGGGACCAAATTCTGCTTTG
AGACACCACTGCTTCAGTGCGACAGAGACACACCCTTCTCACAGGACCTG
GTTGGATTTTTCAGCCAGTGGGGGGGATAACGAACTGAAACTCGATGGGG
GTTGGTTTCCCTATATTTTTTTATGACGGGGGATTTAAATTCTTTTGTTT
TGGGGATGGAAAATATAGCGTAAACATTGGTTTATCCGAATATTTCCAGT
GCGGACAAAAATTGGAGTATAATTATATATTCGAAAAAGTAGAATACCCG
TTCGAGTTCGAACTAGCGAGAGTCCATTGCATTCAAATTCTATAACCAAC
AAATCATTTTAGGTTACCGAGGAAATTTGACATTGTTCTTTCCTTATAGG
ACGCTGATATTACAAAAAGATATGAAGAGTTACATACAATCATTGATCAA
GGAACGAAAGCTTTATTCTTGGACGAGTGGGACATTCATGAAAAATCATC
GGAAGAAGATAACATCATTCACCAAGTAGAAGTTGAAAAATTGTTGAGGA
AATTTGATATCTTATGGATAGCACCAAGCGCACCAAGTCAAGGGAAAATG
AAACAACCGGGTAATCTGACGTTGGATGGTTTCCAAGTTTTAGATCTAAA
ATATAATCTAAGAAATAGCAAGGAAATTGTTGAGGTAACATCTGAAATTG
CTAAAAAGGACGACCAATATTGCTATAAAGAGCTTTTGGCTGAGACACCT
CCAAATTTTCCGACTGGCTGTCAACCAAAATATGTTAAAACAATAGAAGA
AGGTATAAAAATGGCAAGAAAAGTGAATAAGAGGGGTGGAATTTTGGTTA
ACGTTGACCCAACAGATGTGAAAGACGATTTGATAAATTTTATGGAGAAC
AATAAAAAACACTTTAAGACATATTTTTATGAGGAATCTGAAGATTTTGA
AGAAGCTTTGAGACGAAGATATCTGGTGACGAAGAATCGTTATGGGATTA
AAAGAGACAAAAGTCCTTACGACTGTTTACGCGATGGACATATTTTGTTT
ACTGACAATTCACATATTCAAGGTTTTGATTGGCCGACCGTTATTTGTAT
ACAACAGTCACCTCAAGAAAGGAACGCTAAACATAAATGCAATTATTTCT
TAAGATGCACCACCAATCTTATCGTTGTGCACCATATTTAAAAGTTTTTG
TATGACCTTTAACGATTTTTGACTGATTTTTGTAAATTTATATTTATTTA
TGTATGGTAAACCTAGAATTTAACTATGCACATACAGAAATCAGATGATA
CTCTAAATATTTTAAAGGCAAG

Coding sequence (CDS) from alignment at scaffold_234:124375..126996-

>TCONS_00053829 ID=TCONS_00053829|Name=TCONS_00053829|organism=Clytia hemisphaerica|type=CDS|length=4050bp|location=Sequence derived from alignment at scaffold_234:124375..126996- (Clytia hemisphaerica)
GACGCTGATATTACAAAAAGATATGAAGAGTTACATACAATCATTGATCA
AGGAACGAAAGCTTTATTCTTGGACGAGTGGGACATTCATGAAAAATCAT
CGGAAGAAGATAACATCATTCACCAAGTAGAAGTTGAAAAATTGTTGAGG
AAATTTGATATCTTATGGATAGCACCAAGCGCACCAAGTCAAGGGAAAAT
GAAACAACCGGGTAATCTGACGTTGGATGGTTTCCAAGTTTTAGATCTAA
AATATAATCTAAGAAATAGCAAGGAAATTGTTGAGGTAACATCTGAAATT
GCTAAAAAGGACGACCAATATTGCTATAAAGAGCTTTTGGCTGAGACACC
TCCAAATTTTCCGACTGGCTGTCAACCAAAATATGTTAAAACAATAGAAG
AAGGTATAAAAATGGCAAGAAAAGTGAATAAGAGGGGTGGAATTTTGGTT
AACGTTGACCCAACAGATGTGAAAGACGATTTGATAAATTTTATGGAGAA
CAATAAAAAACACTTTAAGACATATTTTTATGAGGAATCTGAAGATTTTG
AAGAAGCTTTGAGACGAAGATATCTGGTGACGAAGAATCGTTATGGGATT
AAAAGAGACAAAAGTCCTTACGACTGTTTACGCGATGGACATATTTTGTT
TACTGACAATTCACATATTCAAGGTTTTGATTGGCCGACCGTTATTTGTA
TACAACAGTCACCTCAAGAAAGGAACGCTAAACATAAATGCAATTATTTC
TTAAGATGCACCACCAATCTTATCGTTGTGCACCATATTTAACAATTTAA
TAAAAGTACGGGTACACCTATACTAGATTATGACATTAAAAGTGCATTAA
TAAACTCTCTAAAAAACTTGGAAATTAATGAGCCCGAACACTGGTTCACA
AAGGAGTTGAAGAAATTCATTGATACTAACGAAATATCGGACGACGAAAG
TTCAGTTTTGAATAAGAACAATTATGATGATTGGATGTCTAATGTAAAGC
TCATGTACATGCTTGAACATAAACGAAGTAAATTGAGTTCAACTCTTTCA
CCGGCTGAATTTGATAAAAGACTCAGGGAATTACTACCTTTATCTGTATT
AAAAGGTGAATTGAAAAAAGAGATTCAAAAAGAGGTACGAGAATTCATTA
GAAAAAATCCACCGAAAAACGACCCTCAAATGGAAACACTTTTTAATTTT
GATCTCTCTGAGATTGCAGAGAAAGTGGATCACTGGCTTTTTGATGAACT
ACTGTCATCTACAACACAGTTAGAAGATACAGTTGTTCTTTGTAATACCC
CTTTCAACACAGAGATTGCAGGGAGTATGCAAGCCGAATTTGATATTCTC
ATTTTTTGCTGGAAGAGAAAAGTTATAATTGGGATTGAGTGTAAGCGGAC
TTTGACTGATTCAGCTTTCGCACAACTAGAAAAGTACCATAAATTGTTAG
AACAAAGACTAGGTGATCAATTAGGATCAGGGTGGAAATTTTGGCCAACT
GTTTGCGTGGAGCACAATAAAGAAATTAACATTGTAAATAACCATTATAT
TAATATGGAGACAGACATTGAAAATTGGTTGACGGAAGTTTTGAATCAGC
ACTTCTTGACTTCTGAGAGAGATATCGTGAATTCAAAAATTCAAGTTAGG
AATGTTCTCAAAATAATCATATTCATAGCTCATTCAAACAAAGATAAGCC
TATTATTGAATCAAATTGGGTGGATTATGTCAGTAAATCTATTGATAAAT
GTGCAGCTAGAAGTATTTTGTTTTACTCAACAAACCAGTTACATGCTTTA
GGATCTACAAATGCTTACAAGAAACTCTTGATTAAGGGTGGATTTGGGAC
AGGTAAAACAGTCTTGCTTCATGACAAAGCATTGCGTTGTATTAAAACAG
AAGAATATTTTGGAAGGGTCACTTACGTTTGTTTATCACATCCTCCTAAA
AGTCTTCAGAGTTTGTTGTATCACCGATCAAAGAAAGCACTGGCGGAGAA
AGTCGCTGTTCACGAGATAAAAGCGGACGCTGATATTACAAAAAGATATG
AAGAGTTACATACAATCATTGATCAAGGAACGAAAGCTTTATTCTTGGAC
GAGTGGGACATTCATGAAAAATCATCGGAAGAAGATAACATCATTCACCA
AGTAGAAGTTGAAAAATTGTTGAGGAAATTTGATATCTTATGGATAGCAC
CAAGCGCACCAAGTCAAGGGAAAATGAAACAACCGGGTAATCTGACGTTG
GATGGTTTCCAAGTTTTAGATCTAAAATATAATCTAAGAAATAGCAAGGA
AATTGTTGAGGTAACATCTGAAATTGCTAAAAAGGACGACCAATATTGCT
ATAAAGAGCTTTTGGCTGAGACACCTCCAAATTTTCCGACTGGCTGTCAA
CCAAAATATGTTAAAACAATAGAAGAAGGTATAAAAATGGCAAGAAAAGT
GAATAAGAGGGGTGGAATTTTGGTTAACGTTGACCCAACAGATGTGAAAG
ACGATTTGATAAATTTTATGGAGAACAATAAAAAACACTTTAAGACATAT
TTTTATGAGGAATCTGAAGATTTTGAAGAAGCTTTGAGACGAAGATATCT
GGTGACGAAGAATCGTTATGGGATTAAAAGAGACAAAAGTCCTTACGACT
GTTTACGCGATGGACATATTTTGTTTACTGACAATTCACATATTCAAGGT
TTTGATTGGCCGACCGTTATTTGTATACAACAGTCACCTCAAGAAAGGAA
CGCTAAACATAAATGCAATTATTTCTTAAGATGCACCACCAATCTTATCG
TTGTGCACCATATTTAACAATTTAATAAAAGTACGGGTACACCTATACTA
GATTATGACATTAAAAGTGCATTAATAAACTCTCTAAAAAACTTGGAAAT
TAATGAGCCCGAACACTGGTTCACAAAGGAGTTGAAGAAATTCATTGATA
CTAACGAAATATCGGACGACGAAAGTTCAGTTTTGAATAAGAACAATTAT
GATGATTGGATGTCTAATGTAAAGCTCATGTACATGCTTGAACATAAACG
AAGTAAATTGAGTTCAACTCTTTCACCGGCTGAATTTGATAAAAGACTCA
GGGAATTACTACCTTTATCTGTATTAAAAGGTGAATTGAAAAAAGAGATT
CAAAAAGAGGTACGAGAATTCATTAGAAAAAATCCACCGAAAAACGACCC
TCAAATGGAAACACTTTTTAATTTTGATCTCTCTGAGATTGCAGAGAAAG
TGGATCACTGGCTTTTTGATGAACTACTGTCATCTACAACACAGTTAGAA
GATACAGTTGTTCTTTGTAATACCCCTTTCAACACAGAGATTGCAGGGAG
TATGCAAGCCGAATTTGATATTCTCATTTTTTGCTGGAAGAGAAAAGTTA
TAATTGGGATTGAGTGTAAGCGGACTTTGACTGATTCAGCTTTCGCACAA
CTAGAAAAGTACCATAAATTGTTAGAACAAAGACTAGGTGATCAATTAGG
ATCAGGGTGGAAATTTTGGCCAACTGTTTGCGTGGAGCACAATAAAGAAA
TTAACATTGTAAATAACCATTATATTAATATGGAGACAGACATTGAAAAT
TGGTTGACGGAAGTTTTGAATCAGCACTTCTTGACTTCTGAGAGAGATAT
CGTGAATTCAAAAATTCAAGTTAGGAATGTTCTCAAAATAATCATATTCA
TAGCTCATTCAAACAAAGATAAGCCTATTATTGAATCAAATTGGGTGGAT
TATGTCAGTAAATCTATTGATAAATGTGCAGCTAGAAGTATTTTGTTTTA
CTCAACAAACCAGTTACATGCTTTAGGATCTACAAATGCTTACAAGAAAC
TCTTGATTAAGGGTGGATTTGGGACAGGTAAAACAGTCTTGCTTCATGAC
AAAGCATTGCGTTGTATTAAAACAGAAGAATATTTTGGAAGGGTCACTTA
CGTTTGTTTATCACATCCTCCTAAAAGTCTTCAGAGTTTGTTGTATCACC
GATCAAAGAAAGCACTGGCGGAGAAAGTCGCTGTTCACGAGATAAAAGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033966XLOC_033966Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053829-proteinTCONS_00053829-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053829-exon-scaffold_234-1575043694:125764..126996TCONS_00053829-exon-scaffold_234-1575043694:125764..126996Clytia hemisphaericaexon
TCONS_00053829-exon-scaffold_234-1575043694:124375..125297TCONS_00053829-exon-scaffold_234-1575043694:124375..125297Clytia hemisphaericaexon
TCONS_00053829-exon-scaffold_234-1510915933:125764..126996TCONS_00053829-exon-scaffold_234-1510915933:125764..126996Clytia hemisphaericaexon
TCONS_00053829-exon-scaffold_234-1510915933:124375..125297TCONS_00053829-exon-scaffold_234-1510915933:124375..125297Clytia hemisphaericaexon
TCONS_00053829-exon-scaffold_234-1491911889:125764..126996TCONS_00053829-exon-scaffold_234-1491911889:125764..126996Clytia hemisphaericaexon
TCONS_00053829-exon-scaffold_234-1491911889:124375..125297TCONS_00053829-exon-scaffold_234-1491911889:124375..125297Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_234supercontigscaffold_234:124375..126996 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0206316	0	0.0491461	0.0582539	0.140562	0.131592	0.122841	0.0190198	0.0553832	0.0485423	1.84204	1.30888	0.0103469	0.0111038	0.177827	0.350513	3.13796	2.59449	0.704713	0.670282	0.208927	0.607824	0.195639	0.453968	0.174899	0.106661	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053829 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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