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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053877 ID=TCONS_00053877|Name=TCONS_00053877|organism=Clytia hemisphaerica|type=transcript|length=1196bp
gtgtaatcatcTTAACAAAAACCTGAGGGTAAAATATCTGCTGGATTTTG
AGGTTTACAGTACCCAGAAGTTTTgcacttttaaaatcttttaaaagtag
attTCTTTTAGTTATCTATAAAATATTTGCAGAGTTATATACAGGATCAT
GTATCCCAAATCCCCTACTTAGCTCTACTGTGTAAAACTGCAATATGTTG
CAATACAATgctaacaaaagaaatttgattaaATATCCCTTTTTTAATTG
GAGGCTTTTGTGatttgtttttctataaaatttcTTAGTTAAATTGTAGG
CTTTCTTATTGCATGAATATAACTCAATCGTTTTTGGTCAGGTTTCCTCC
TTGTTGTGAATTGCTGTCTACACGTCTCAAGATTCTATCCATCATTACAT
CATCAGTATAAACTTGACCAACGGTGTCTCCTGTACCATTAGGGTCCATA
ATATTAGTGGCCATAGAGTTAATTCTTGTCAAAAATGAGCTCAAAAGTCT
TTTGTTTATATGATCAGTTTGTGATGTTTCTCTAGCTGGACCTGGAATAT
CAGAGGGAAGTGGTGGCTCGTTTGAGCTAAAAACATCATTATTATCTCCA
AACTGATTTCCACCAAAAAGCACAGAAGAAATAGTTGCTGACCGacgttt
tgtttgatttgatgaGGTACCATTTTCATCTGATGTATCTCCGTCAATTG
TATCAGATCCAACACTCAGTGAGCGTATCCTGGACTGCATTATCTCAGTC
TCTGATTTTGGTTCACTTGATGGATCCTGGATTTGATAATAATCATCTGA
TAAACTCAAACTTCTACCCAAAAGAGAAGCCATAAAACTACCTCGTCTTG
GTCTTCGTCCAGTATCAGTAGGGCTGCTTCCTGCTGCCCCTTCCGAAAAG
CTTTTATTATCACCACTCATATTNTAAAACTACCTCGTCTTGGTCTTCGT
CCAGTATCAGTAGGGCTGCTTCCTGCTGCCCCTTCCGAAAAGCTTTTATT
ATCACCACTCATATTGAAGTATAGAGTAATCAAATAGTCTTTTGTTGAAG
TGCTGGTATCCTCTACCAGTCTACTAAAGCTAAGgtgtaaaaaaaagttt
agttGTCGTTTACATTTCCAGAATGCCACTGCAGGGCGAAGCGCAAGGAA
AagcaaaacaaattcaaaacggGAGTAGATTgactttttattaaaa Run BLAST on NCBI protein sequence of TCONS_00053877-protein >TCONS_00053877-protein ID=TCONS_00053877-protein|Name=TCONS_00053877-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MSGDNKSFSEGAAGSSPTDTGRRPRRGSFMASLLGRSLSLSDDYYQIQDP
SSEPKSETEIMQSRIRSLSVGSDTIDGDTSDENGTSSNQTKRRSATISSV
LFGGNQFGDNNDVFSSNEPPLPSDIPGPARETSQTDHINKRLLSSFLTRI
NSMATNIMDPNGTGDTVGQVYTDDVMMDRILRRVDSNSQQGGNLTKND Run BLAST on NCBI transcript from alignment at scaffold_234:567124..568319 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053877 ID=TCONS_00053877|Name=TCONS_00053877|organism=Clytia hemisphaerica|type=transcript|length=1196bp|location=Sequence derived from alignment at scaffold_234:567124..568319 (Clytia hemisphaerica)
ttttaataaaaagtcAATCTACTCccgttttgaatttgttttgctTTTCC
TTGCGCTTCGCCCTGCAGTGGCATTCTGGAAATGTAAACGACaactaaac
ttttttttacacCTTAGCTTTAGTAGACTGGTAGAGGATACCAGCACTTC
AACAAAAGACTATTTGATTACTCTATACTTCAATATGAGTGGTGATAATA
AAAGCTTTTCGGAAGGGGCAGCAGGAAGCAGCCCTACTGATACTGGACGA
AGACCAAGACGAGGTAGTTTTANAATATGAGTGGTGATAATAAAAGCTTT
TCGGAAGGGGCAGCAGGAAGCAGCCCTACTGATACTGGACGAAGACCAAG
ACGAGGTAGTTTTATGGCTTCTCTTTTGGGTAGAAGTTTGAGTTTATCAG
ATGATTATTATCAAATCCAGGATCCATCAAGTGAACCAAAATCAGAGACT
GAGATAATGCAGTCCAGGATACGCTCACTGAGTGTTGGATCTGATACAAT
TGACGGAGATACATCAGATGAAAATGGTACCtcatcaaatcaaacaaaac
gtCGGTCAGCAACTATTTCTTCTGTGCTTTTTGGTGGAAATCAGTTTGGA
GATAATAATGATGTTTTTAGCTCAAACGAGCCACCACTTCCCTCTGATAT
TCCAGGTCCAGCTAGAGAAACATCACAAACTGATCATATAAACAAAAGAC
TTTTGAGCTCATTTTTGACAAGAATTAACTCTATGGCCACTAATATTATG
GACCCTAATGGTACAGGAGACACCGTTGGTCAAGTTTATACTGATGATGT
AATGATGGATAGAATCTTGAGACGTGTAGACAGCAATTCACAACAAGGAG
GAAACCTGACCAAAAACGATTGAGTTATATTCATGCAATAAGAAAGCCTA
CAATTTAACTAAgaaattttatagaaaaacaaatCACAAAAGCCTCCAAT
TAAAAAAGGGATATttaatcaaatttcttttgttagcATTGTATTGCAAC
ATATTGCAGTTTTACACAGTAGAGCTAAGTAGGGGATTTGGGATACATGA
TCCTGTATATAACTCTGCAAATATTTTATAGATAACTAAAAGAaatctac
ttttaaaagattttaaaagtgcAAAACTTCTGGGTACTGTAAACCTCAAA
ATCCAGCAGATATTTTACCCTCAGGTTTTTGTTAAgatgattacac Coding sequence (CDS) from alignment at scaffold_234:567124..568319 >TCONS_00053877 ID=TCONS_00053877|Name=TCONS_00053877|organism=Clytia hemisphaerica|type=CDS|length=597bp|location=Sequence derived from alignment at scaffold_234:567124..568319 (Clytia hemisphaerica)
ATGAGTGGTGATAATAAAAGCTTTTCGGAAGGGGCAGCAGGAAGCAGCCC
TACTGATACTGGACGAAGACCAAGACGAGGTAGTTTTATGGCTTCTCTTT
TGGGTAGAAGTTTGAGTTTATCAGATGATTATTATCAAATCCAGGATCCA
TCAAGTGAACCAAAATCAGAGACTGAGATAATGCAGTCCAGGATACGCTC
ACTGAGTGTTGGATCTGATACAATTGACGGAGATACATCAGATGAAAATG
GTACCtcatcaaatcaaacaaaacgtCGGTCAGCAACTATTTCTTCTGTG
CTTTTTGGTGGAAATCAGTTTGGAGATAATAATGATGTTTTTAGCTCAAA
CGAGCCACCACTTCCCTCTGATATTCCAGGTCCAGCTAGAGAAACATCAC
AAACTGATCATATAAACAAAAGACTTTTGAGCTCATTTTTGACAAGAATT
AACTCTATGGCCACTAATATTATGGACCCTAATGGTACAGGAGACACCGT
TGGTCAAGTTTATACTGATGATGTAATGATGGATAGAATCTTGAGACGTG
TAGACAGCAATTCACAACAAGGAGGAAACCTGACCAAAAACGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053877-exon-scaffold_234-1491911889:567124..568319 | TCONS_00053877-exon-scaffold_234-1491911889:567124..568319 | Clytia hemisphaerica | exon |
| TCONS_00053877-exon-scaffold_234-1510915933:567124..568319 | TCONS_00053877-exon-scaffold_234-1510915933:567124..568319 | Clytia hemisphaerica | exon |
| TCONS_00053877-exon-scaffold_234-1575043694:567124..568319 | TCONS_00053877-exon-scaffold_234-1575043694:567124..568319 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_234 | supercontig | scaffold_234:567124..568319 . |
Blast
The following BLAST results are available for this feature:
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