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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054013 ID=TCONS_00054013|Name=TCONS_00054013|organism=Clytia hemisphaerica|type=transcript|length=844bp
CTTCATTCAGTATATCATCATAAAAGTTGAGACATCTATTCAAAACAATG
TTCACAAGCACTTTGGTCAAAATACTCGATAAGGTAATTCCGCAGTATTT
CGTTGGATAACGGGGAGagcctttatttttgaatatgGCACTTATTTCTG
CTTTGCTAAAATCGCCTGGAACTTTTCTATTTTCCCAGATGTCATTGAAA
AATTTGTGGATAGTTGTTTTGAATTCGTTACTTTCAAGACTGAGTTTTAG
TAGTTCAGCGGAAATATCATGACTTGCTTTGTTATTACGAAGTCTGGTAA
TAGCTTTGGTTATTTCATCTATGGTGGGTGGAAGATCATTTATATCTAAC
GGTTGATCTCGTGGTAATGGTAGTGAAAGTGGGTTTGGTACATTTAGTTG
ATCAGGGTTGAAATGATCGCGAAAATGTTTGAGTAGACCAGGACAGTCTA
ATTGGCGGGTTTTTTTCTGTGAATTTTCGCTTGTTCTTTTGGCGATTTTA
TAGGATTGGGCGATGTCACGAGCAGTTTGTGCAGCGGTAAACTTAGATAC
TTCATTTGCGTAGTGTTTATTTCGTAGGAGTGTTACTCGTTTACGAATCT
TCCTTTGAGTTGCTCGATATTGCTTTTTATCGTGTTTGATGTGGTATTGT
TTTCTTCGCTCGAGAAGTTCTTTTAGTTCATAACCGCTATCCCATGGAAA
CGGTTGTTTTTGGGTTTTGTTGATACGAGGAAGGAATTCTTCGGCCGATA
GTTGTATGGTTTCGATTATGGTTTCTGGTGATACTTGTTGTGTAGGTGAA
AGATTTTCCGTTAGGGATTTGACGaagttttctttattatttcG Run BLAST on NCBI protein sequence of TCONS_00054013-protein >TCONS_00054013-protein ID=TCONS_00054013-protein|Name=TCONS_00054013-protein|organism=Clytia hemisphaerica|type=polypeptide|length=281bp
RNNKENFVKSLTENLSPTQQVSPETIIETIQLSAEEFLPRINKTQKQPFP
WDSGYELKELLERRKQYHIKHDKKQYRATQRKIRKRVTLLRNKHYANEVS
KFTAAQTARDIAQSYKIAKRTSENSQKKTRQLDCPGLLKHFRDHFNPDQL
NVPNPLSLPLPRDQPLDINDLPPTIDEITKAITRLRNNKASHDISAELLK
LSLESNEFKTTIHKFFNDIWENRKVPGDFSKAEISAIFKNKGSPRYPTKY
CGITLSSILTKVLVNIVLNRCLNFYDDILNE Run BLAST on NCBI transcript from alignment at scaffold_237:524532..525375 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054013 ID=TCONS_00054013|Name=TCONS_00054013|organism=Clytia hemisphaerica|type=transcript|length=844bp|location=Sequence derived from alignment at scaffold_237:524532..525375 (Clytia hemisphaerica)
CgaaataataaagaaaacttCGTCAAATCCCTAACGGAAAATCTTTCACC
TACACAACAAGTATCACCAGAAACCATAATCGAAACCATACAACTATCGG
CCGAAGAATTCCTTCCTCGTATCAACAAAACCCAAAAACAACCGTTTCCA
TGGGATAGCGGTTATGAACTAAAAGAACTTCTCGAGCGAAGAAAACAATA
CCACATCAAACACGATAAAAAGCAATATCGAGCAACTCAAAGGAAGATTC
GTAAACGAGTAACACTCCTACGAAATAAACACTACGCAAATGAAGTATCT
AAGTTTACCGCTGCACAAACTGCTCGTGACATCGCCCAATCCTATAAAAT
CGCCAAAAGAACAAGCGAAAATTCACAGAAAAAAACCCGCCAATTAGACT
GTCCTGGTCTACTCAAACATTTTCGCGATCATTTCAACCCTGATCAACTA
AATGTACCAAACCCACTTTCACTACCATTACCACGAGATCAACCGTTAGA
TATAAATGATCTTCCACCCACCATAGATGAAATAACCAAAGCTATTACCA
GACTTCGTAATAACAAAGCAAGTCATGATATTTCCGCTGAACTACTAAAA
CTCAGTCTTGAAAGTAACGAATTCAAAACAACTATCCACAAATTTTTCAA
TGACATCTGGGAAAATAGAAAAGTTCCAGGCGATTTTAGCAAAGCAGAAA
TAAGTGCcatattcaaaaataaaggctCTCCCCGTTATCCAACGAAATAC
TGCGGAATTACCTTATCGAGTATTTTGACCAAAGTGCTTGTGAACATTGT
TTTGAATAGATGTCTCAACTTTTATGATGATATACTGAATGAAG Coding sequence (CDS) from alignment at scaffold_237:524532..525375 >TCONS_00054013 ID=TCONS_00054013|Name=TCONS_00054013|organism=Clytia hemisphaerica|type=CDS|length=843bp|location=Sequence derived from alignment at scaffold_237:524532..525375 (Clytia hemisphaerica)
CgaaataataaagaaaacttCGTCAAATCCCTAACGGAAAATCTTTCACC
TACACAACAAGTATCACCAGAAACCATAATCGAAACCATACAACTATCGG
CCGAAGAATTCCTTCCTCGTATCAACAAAACCCAAAAACAACCGTTTCCA
TGGGATAGCGGTTATGAACTAAAAGAACTTCTCGAGCGAAGAAAACAATA
CCACATCAAACACGATAAAAAGCAATATCGAGCAACTCAAAGGAAGATTC
GTAAACGAGTAACACTCCTACGAAATAAACACTACGCAAATGAAGTATCT
AAGTTTACCGCTGCACAAACTGCTCGTGACATCGCCCAATCCTATAAAAT
CGCCAAAAGAACAAGCGAAAATTCACAGAAAAAAACCCGCCAATTAGACT
GTCCTGGTCTACTCAAACATTTTCGCGATCATTTCAACCCTGATCAACTA
AATGTACCAAACCCACTTTCACTACCATTACCACGAGATCAACCGTTAGA
TATAAATGATCTTCCACCCACCATAGATGAAATAACCAAAGCTATTACCA
GACTTCGTAATAACAAAGCAAGTCATGATATTTCCGCTGAACTACTAAAA
CTCAGTCTTGAAAGTAACGAATTCAAAACAACTATCCACAAATTTTTCAA
TGACATCTGGGAAAATAGAAAAGTTCCAGGCGATTTTAGCAAAGCAGAAA
TAAGTGCcatattcaaaaataaaggctCTCCCCGTTATCCAACGAAATAC
TGCGGAATTACCTTATCGAGTATTTTGACCAAAGTGCTTGTGAACATTGT
TTTGAATAGATGTCTCAACTTTTATGATGATATACTGAATGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054013-exon-scaffold_237-1491911889:524532..525375 | TCONS_00054013-exon-scaffold_237-1491911889:524532..525375 | Clytia hemisphaerica | exon |
| TCONS_00054013-exon-scaffold_237-1510915933:524532..525375 | TCONS_00054013-exon-scaffold_237-1510915933:524532..525375 | Clytia hemisphaerica | exon |
| TCONS_00054013-exon-scaffold_237-1575043694:524532..525375 | TCONS_00054013-exon-scaffold_237-1575043694:524532..525375 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_237 | supercontig | scaffold_237:524532..525375 . |
Blast
The following BLAST results are available for this feature:
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