TCONS_00054025 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00054025
Unique Name	TCONS_00054025
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1670

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_238:14115..20113-

transcript sequence

>TCONS_00054025 ID=TCONS_00054025|Name=TCONS_00054025|organism=Clytia hemisphaerica|type=transcript|length=1670bp
gaaaaatatttatgtGGTTTGTTTAGTTGTTTGTGGAGTAGCTTATTGTG
TAGTGTAAAAAGCCAAATGTATTATGACTATTGATATGACAGCATCAACA
AATAATATTGGTATGGCCAAAGAGCCAGAAGCTTGTAAACTGTTTATTGG
ACAAGTACCCAGAACATGGACTGAAAAAGAACTGAAACCTATATTCGATC
AATATGGTGAAATACATGACCTTACTGTGCTTCATGATAAATACACTGGT
CAACATAAAGgatgtGCATTTTTAACATACTATGAGAAAGAATCAGCCCA
GCAAGCACAAAATGAACTTCATGAAAAAAAGACACTTCCAGGGTGTGGCC
ATGCAATGCAAGTCAAACCTGCAGTATCAGAGACGAAAACTGAAGATAGA
AAATTATTCATTGGAATGTTATCCaagaaattaaatgaagaagaccTAAG
AGTTATGTTTTCCCCCTTTGGAACGATAGAAGAACTGACAGTTTTGAAAA
ATCCTGATGGAACTAGTAAAgGTTGTTCATTCATCAAATATGCAAACAGA
TTACAAGCACAAAATGCTATTAGAAAGTTGCACGGCTCTCAGACTATGGA
GGGATGCTCTTCACCTCTTGTTGTTAAAATTGCTGATACAGAAAAGGACA
AATTGCAAAAACGTATGCAAGCTATGGCAACTAATTTAGTCGGACTTGGT
ATGACAATGAGCCAATTTGGAATGCCTGGAGGCTTAATAAACAATGCATA
TCCTAATGTAGGACAAAATAATGCATATCAACAACTTTTAACACAAATGG
CAATGCCAAATACACCTGTTCCAGCTCAGCTTGTTAGTAATCCTGGATTC
GCTAATATGAACAATAACACTTTACCAAATGGTGTCAGTGCTGCTCTCGT
GGCTGCAATGGCAaaccagcaacaacaacaattaCAAGGACTTACTCAAA
CACAACAAGCAAACTCTTCACTATTCAGTTCTAGTATTGGTCAACAGTTA
CCTACAAGTAGTTTCACCACGTCACAAAGCGCAACAAATCCATTAGCTAA
TAATGGTTTGTCTGCTCTTCAAACTAACATATCAGGAGCCAATTCTATTG
CTAACCTTGGTGGACTAAACAATATGGCTAATCTTGCAAGTATGACAGGT
TTAAGTTCTACTCAAGTTGCAGCAAACCCAGCGGTAGTTGCTGCTGCAGC
AGCAGCCTCGGGGCCACTTCAAAGCCTCCCAAATATTCCTACCTCCAATG
TCAATAGGGCCCAGCCTAACATTTCTGCAGAGCAATGGCAAACTGCTTAC
TCAGGAGTCGAGCAATTTGTTGCTGCACTTCCACAAGCGTATCAAAATTT
ACAAAGGCAGAATGTCGCACAACCCCAAAAAGAAGGTCCTGATGGTTCAA
ATCTGTTCATTTACCACCTTCCACCTGAATTTACCGATGCTGATCTGATG
CAGACCTTTATGCCATTTGGAAATGTTCTCTCTGCTAAAGTCTTCATTGA
CAAACCTACGTTGTTGAGCAAATGTTTTGgttttgtcAGTTTTGACAACC
AACACAGTGCCAGGCAAGCTATTGAAGCAATGAATGGATTTAGTGTTGGT
TCCAAGCGGTTAAAGGTTCAGTTGAAGCGACCAaaagaccaaaacaaacc
aTATTAAAAAAACATGCATG

Run BLAST on NCBI

transcript from alignment at scaffold_238:14115..20113-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00054025 ID=TCONS_00054025|Name=TCONS_00054025|organism=Clytia hemisphaerica|type=transcript|length=5999bp|location=Sequence derived from alignment at scaffold_238:14115..20113- (Clytia hemisphaerica)
GAAAAATATTTATGTGGTTTGTTTAGTTGTTTGTGGAGTAGCTTATTGTG
TAGTGTAAAAAGCCAAATGTATTATGACTATTGATATGACAGCATCAACA
AATAATATTGGTATGGCCAAAGAGCCAGAAGCTTGTAAACTGTTTATTGG
ACAAGTACCCAGAACATGGACTGAAAAAGAACTGAAACCTATATTCGATC
AATATGGTGAAATACATGACCTTACTGTGCTTCATGATAAATACACTGGT
CAACATAAAGGTTATTATTGGAATTACTATATAAAATTTTGGCCAATTTA
ATCTAATTAATGTGTTGCACTTTCAAATTCTGTAATTCTTGTGTTGTTGA
ATGATATCCTGGCTGGATGACAACACTGCCAACGCACTGAATTGCCTTGT
GATTTTATCCGGTGCTGAATAAAAGTATTTAAATTTCACCAGACAAAATT
GTGTTACAGTTTTTTAGGCCGGCCACACCAATCACCACAAATAACTTGTG
TTGTGTCGTCTGACCATCTGATAATTTTTCTTAATTTTCCAATTATTTTG
AGTCAAGAAGTTGCAAAATTGTCGGAATTTTATCCAATTCCATCCCACCC
GCAATCTTTACATCAATCGCACGTTTCATTGTTTTGGGCCATTCCAGAAA
ATTTTTGTTACCCCACGTCAGACGACGTGCATTTTTTAATTTTTTCTAGC
CTCAGAAATTTTTTTTTTTCCAGTGGTGGTCGGAAATTCCGATAAAAATC
CATGTACTTTTGCAAAATGCATCGGAAATTCCACTCTTTTTTGCCTTTTT
TTAATTCAATTGCCTTGGAAATTCATACATTTTCTTCTCTCANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTCTCACCTTGGA
AATTTCGAATTTTGGTGAAAACTTTTGCCCTCGGAAATCCTGTGTCGTCC
GCCCCCCTGTTACAGACAAATTCTGGAATGGCCCTTTACGGAAGAATTTT
ATTTATAAATATAAACAGAGATAATATCCAATCCTTTCCGTGAACGTGTT
ATTATCTCCTTAGTCATAAAACAGAGATACCATATTTCAAAAAAAGAGGG
GCTGTATCGTGATCACATGAAATCCAAGAAAGGGCCACAGTTGACGGACC
GTCTACATAAACAAGAAGACAGTGGGCCGTTTATTTTCAATTTTCGATAG
ATTTGATTTCTGCCTGATTGATAGTTTGAAAATCCATTTTTCCGACGTTA
TTTTCACTGACCGAATCTGACCGAATGACTCCATTTTTATTGCCTAAAAC
GACGCGAACACAAGTTATTTGCGATTCTGGCCTTACACCAATTCTTGACA
CCAGACTTTTTTGTTACTGTTTGCGCGCTCATTGGATTGATCCACATCCA
TGTGCCAGGTTTAGATTGTCCAGAGATAAAAAGTTTCATCCTTCAACACT
TGGCATTAGGATAAGCCTGGTGCTTCAGTCTGTTGTGTTGGCAGGATTGT
CTATCATGCAAAATCATTTTGCCAAATTGGTTGCAGTCAGATTGCATAGG
AAAATATGCAAAACCTATGCAAAGAGAATAATCAGAATATTATTAGCATT
AAAGAAAAGCAACAACCTAAACTCAACTGCTTGACTTTTACCCTTCTTGA
CAAAGAAATAATCAGAAAAAAGTGTCACAAGAGCCTTGGGTCTTGAGAAC
TGAAAATTGTTCAGTAATTTTATGAATTTCACTGCTGGTTTTTCTTCTTT
CATATCTATAATTTATTAAATTAAAGTATTTTTTTTTTCAGGATGTGCAT
TTTTAACATACTATGAGAAAGAATCAGCCCAGCAAGCACAAAATGAACTT
CATGAAAAAAAGACACTTCCAGGGGTAAGAATTCTGCTCAGGTTACAGTA
ATATTGTCCATTATTTTAAGATTGATAATATTATAAGATATATAATATTA
GTTTGTACACACTTTTGAATCTTGAAAGGTATATACAGTGACAATATTCA
TTTTACTCAAGCAGGTTCTACTCTAACTATATCGACTTTCTTACTTATCT
TCTAGTGTGGCCATGCAATGCAAGTCAAACCTGCAGTATCAGAGACGAAA
ACTGAAGATAGAAAATTATTCATTGGAATGTTATCCAAGAAATTAAATGA
AGAAGACCTAAGAGTTATGTTTTCCCCCTTTGGAACGATAGAAGAACTGA
CAGTTTTGAAAAATCCTGATGGAACTAGTAAAGGTAAAATTGTTTTGTTT
GTGTCTGTTTTATTTACAAGGTTTTTTTTCAAAATGTGGTCTAATGGACC
CTGTTGGGTCCTTTATGACCCTGTCTAATGGTGGTATATCTCTGATCATT
CTAGAAAATTTAATAACATTTTTATTAACATTGTAAATGTTGAAATGATG
AATGTCTTCTTTTTTATCTAGGTTGTTCATTCATCAAATATGCAAACAGA
TTACAAGCACAAAATGCTATTAGAAAGTTGCACGGCTCTCAGACTATGGA
GGTATGAATTCTTCATTGACTCACTAATTCCAACTTTTGCAATAAGTTGA
TATACTAAATCTAGCTTTATCTTACATTTTGGTATTGAAGAAATTAGATT
TTGACTGTAGGTATTTTACTTTACCCTTTGATCAAATATGTATACATTAT
TACAATCTTTTCAGGGATGCTCTTCACCTCTTGTTGTTAAAATTGCTGAT
ACAGAAAAGGACAAATTGCAAAAACGTATGCAAGCTATGGCAACTAATTT
AGTCGGACTTGGTATGACAATGAGCCAATTTGGAATGCCTGGAGGCTTAA
TAAACAATGCATATCCTAATGTAGGACAAAATAATGCATATCAACAACTT
TTAACACAAATGGCAATGCCAAATACACCTGTTCCAGCTCAGCTTGTTAG
TAATCCTGGATTCGCTAATATGAACAATAACACTTTACCAAATGGTGTCA
GTGCTGCTCTCGTGGCTGCAATGGCAAACCAGCAACAACAACAATTACAA
GGACTTACTCAAACACAACAAGCAAACTCTTCACTATTCAGTTCTAGTAT
TGGTCAACAGTTACCTACAAGTAGTTTCACCACGTCACAAAGCGCAACAA
ATCCATTAGCTAATAATGGTTTGTCTGCTCTTCAAACTAACATATCAGGT
ATGACATTGTTTGAATTTTGAATTAGATAAGATTGATTCAATAATGATTG
AAAAATGTTAATAAACAGTGCTTTAGTATAGAGGTAGAGTATTGGGATAT
GCTGCATAAGGTTTTTGGTTTGATCTCCAGCCGGGCAAGTGGTCATATCA
AATATTCCCAAAATGGTCCTTGATGCCTCTCTGCTTGATGCTCAGTAACT
AAAGAGAAGGGTCAAGAGTAAGTAAATAAATCCTGGGAAAAGAGCGGTAT
CGCCCTGTGGTTGCAACTTTCTTTCTACTATTAATAAACCTGAATAAACA
ATTTAACTTAGTTAAACAGGGAATGTAAGCAAGCTCCTTTTGATTCTGTT
TGATTTAACAATTTATATGAGACAGAATGAGTTGGGGTATAAGCAGATAA
AGCCTAAACTCTAGTACTTTTTTTCCCTTAGGAGCCAATTCTATTGCTAA
CCTTGGTGGACTAAACAATATGGCTAATCTTGCAAGTATGACAGGTTTAA
GTTCTACTCAAGTTGCAGCAAACCCAGCGGTAGTTGCTGCTGCAGCAGCA
GCCTCGGGGCCACTTCAAAGCCTCCCAAATATTCCTACCTCCAATGTCAA
TAGGGCCNATTTGGAATGCCTGGAGGCTTAATAAACAATGCATATCCTAA
TGTAGGACAAAATAATGCATATCAACAACTTTTAACACAAATGGCAATGC
CAAATACACCTGTTCCAGCTCAGCTTGTTAGTAATCCTGGATTCGCTAAT
ATGAACAATAACACTTTACCAAATGGTGTCAGTGCTGCTCTCGTGGCTGC
AATGGCAAACCAGCAACAACAACAATTACAAGGACTTACTCAAACACAAC
AAGCAAACTCTTCACTATTCAGTTCTAGTATTGGTCAACAGTTACCTACA
AGTAGTTTCACCACGTCACAAAGCGCAACAAATCCATTAGCTAATAATGG
TTTGTCTGCTCTTCAAACTAACATATCAGGTATGACATTGATTCAATAAT
GATTGAAAAATGTTAATAAACAGTGCTTTAGTATAGAGGTAGAGCATTGG
GATACGCTGCATAAGGTTTTTGGTTTGATCTCCAGCCGGGCAAGTGGTCA
TATCAAATATTCCCAAAATGGTCCTTGATGCCTCTCTGCTTGATGCTCAG
TAACTAAAGAGAAGGGTCAAGAGTAAGTAAATAAATCCTGGGAAAAGAGC
GGTATCGCCCTGTGGTTGCAACTTTCTTTCTACTATTAATAAACCTGAAT
AAACAATTTAACTTAGTTAAACAGGGAATGTAAGCAAGCTCCTTTTGATT
CTGTTTGATTTAACAATTTATATGAGACAGAATGAGTTGGGGTATAAGCA
GATAAAGCCTAAACTCTAGTACTTTTTTTCCCTTAGGAGCCAATTCTATT
GCTAACCTTGGTGGACTAAACAATATGGCTAATCTTGCAAGTATGACAGG
TTTAAGTTCTACTCAAGTTGCAGCAAACCCAGCGGTAGTTGCTGCTGCAG
CAGCAGCCTCGGGGCCACTTCAAAGCCTCCCAAATATTCCTACCTCCAAT
GTCAATAGGGCCCAGCCTAACATTTCTGCAGAGCAATGGCAAACTGCTTA
CTCAGGAGTCGAGCAATTTGTTGGTAAGACTGTCAAACAAACAGTCTTAT
CAAGTGCATAGGAAATGTGTCAAAAACTTCTTGTTTATTTTGAAGATTTA
TCATCTTTGTGTTGTTGCTTTTCATTTCTTTCTGTTTTGTCATGTTGTTT
TTATTGTATGTTATAAATTATGTGTGCACAAGAAGTTGGGAGTTGCGTGC
AAGAAGTGTGGAAATTTTAAAATATTGATTTTGCATTCAAGCTACTTTTC
ACATTTTTGTTCAGCAACTTTCATAATGTATGTCATTGTCTTATGCATTT
GATAAGTGTTTGTCTTTGTCCTGTTTTTGTCTAATTGTATTGATGACCTT
CAATGACCATTTAAAAAAAAGGAGGGATGTGTAAATGATTTCCCTGTATA
TTTAAAGTAGATATTATTCATAGTTCTAGATGAGGGTTGATATGTATCAT
TTCCATTATATTTCTGCTACTTCAACTAGCAATTCTTATTTGATCATGTG
AGAATTATGCAAACCTATACTTTCTAATGTTGACTCTTTGTAGAGCTTTA
TTCTTTAGATTTTTATGTGCTTACTTTGAATTCGGTATTTCTAAATCTTG
TTTATTTTTAATTAAAGCTGCACTTCCACAAGCGTATCAAAATTTACAAA
GGCAGAATGTCGCACAACCCCAAAAAGAAGGTTAATTGTTATTTTGTCTG
TTTTATTTTGAATGACTTTATTTTTCTATTTAAAGTTAATTGTTATTACT
GGCAAGAACCTTATTGATCATGTTGATTTTTATTTGCTTTCAGGTCCTGA
TGGTTCAAATCTGTTCATTTACCACCTTCCACCTGAATTTACCGATGCTG
ATCTGATGCAGACCTTTATGCCATTTGGAAATGTTCTCTCTGCTAAAGTC
TTCATTGACAAACCTACGTTGTTGAGCAAATGTTTTGGTAATTGTTATTT
TATAAACACTTTATTTTTTTGTTGATCAGATGAAATTAATAGTTTGTGAA
TAGCACTCATATTTTTTCATTGTGTTACTTGTAAATTATCCTTTTTAAAC
TTTAGCACATGTATCATTTTGTAACTTGCAATGTTTTGTAATGTTTACTT
TTTTTCAGGTTTTGTCAGTTTTGACAACCAACACAGTGCCAGGCAAGCTA
TTGAAGCAATGAATGGATTTAGTGTTGGTTCCAAGCGGTTAAAGGTTCAG
TTGAAGCGACCAAAAGACCAAAACAAACCATATTAAAAAAACATGCATG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_034108	XLOC_034108	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_238	supercontig	scaffold_238:14115..20113 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.2252	4.8236	7.86033	7.91055	25.2014	19.7321	31.4561	32.7837	23.8739	27.7639	23.0352	22.5706	22.4138	20.0107	12.9494	19.8627	35.4213	28.5808	16.5765	21.1808	17.2249	16.5222	7.59371	11.6819	16.8118	17.1936	31.2739	23.4715	19.8255	24.6302

Blast

[Close]

BLAST of TCONS_00054025 vs. Swiss-Prot (Human)
Match: CELF3 (CUGBP Elav-like family member 3 OS=Homo sapiens GN=CELF3 PE=1 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 9.155e-79
Identity = 120/201 (59.70%), Postives = 152/201 (75.62%), Query Frame = 2

Query:  119 KEPEACKLFIGQVPRTWTEKELKPIFDQYGEIHDLTVLHDKYTGQHKGCAFLTYYEKESAQQAQNELHEKKTLPGCGHAMQVKPAVSETKTEDRKLFIGMLSKKLNEEDLRVMFSPFGTIEELTVLKNPDGTSKGCSFIKYANRLQAQNAIRKLHGSQTMEGCSSPLVVKIADTEKDKLQKRMQAMATNLVGLGMTMSQFG 721
            KEP+A KLF+GQ+PR   EK+LKPIF+Q+G I +LTV+ DKYTG HKGCAFLTY  ++SA +AQ+ LHE+KTLPG    +QVKPA SE++ EDRKLF+GML K+  +ED+R MF PFGTI+E TVL+ PDGTSKGC+F+K+    +AQ AI  LH S+T+ G SS LVVK ADTEK++  +RMQ +AT L        QFG
Sbjct:    2 KEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFG 202

HSP 2 Score: 155.992 bits (393), Expect = 2.791e-41
Identity = 79/156 (50.64%), Postives = 100/156 (64.10%), Query Frame = 2

Query: 1265 PNISAEQWQTAYSGVEQFVAALPQAYQNLQRQNVAQP--------------------------QKEGPDGSNLFIYHLPPEFTDADLMQTFMPFGNVLSAKVFIDKPTLLSKCFGFVSFDNQHSARQAIEAMNGFSVGSKRLKVQLKRPKDQNKPY 1654
            P    +  Q AY+G++ + AA P AY +L      QP                          Q+EGPDG N+FIYHLP EFTD++++Q F+PFG+V+SAKVF+D+ T  SKCFGFVSFDN  SA+ AI+AMNGF +G KRLKVQLKRPKD N+PY
Sbjct:  311 PAAPVDPLQQAYAGMQHYTAAYPAAY-SLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 465

The following BLAST results are available for this feature:

BLAST of TCONS_00054025 vs. Swiss-Prot (Human)

BLAST of TCONS_00054025 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CELF3	9.155e-79	59.70	CUGBP Elav-like family member 3 OS=Homo sapiens GN...	[more]

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TCONS_00054025 (transcript) - C. hemisphaerica