TCONS_00054446 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054446
Unique NameTCONS_00054446
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length325

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054446 ID=TCONS_00054446|Name=TCONS_00054446|organism=Clytia hemisphaerica|type=transcript|length=325bp
AtgttcaaaagtaaattgtcgACCAGGCTACGAGAAAATATATGGCTTGC
TCAATGAGAGCAGTGATCTGTTCATTGAGAAACATGGTTGGAAATGTCAA
TTGTGTCCACCAAACTACGTCAATCCAAATCCTGAATCGAGCTCTGGTTG
TATACCTTGTACAGGTGCTCATAATGTTGATGATGGCCAAAGATTGAAAT
GTGTTGATCCTTATACAAATCAATATTTCGTTTTCACTGGGACTGAAAAA
TATACCATATTCACTTTAACAGTTTTTGGATTGGTCCTGGCAATCATAAT
TCTGGCGATCTTCattaaatacaaa
Run BLAST on NCBI

protein sequence of TCONS_00054446-protein

>TCONS_00054446-protein ID=TCONS_00054446-protein|Name=TCONS_00054446-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
CSKVNCRPGYEKIYGLLNESSDLFIEKHGWKCQLCPPNYVNPNPESSSGC
IPCTGAHNVDDGQRLKCVDPYTNQYFVFTGTEKYTIFTLTVFGLVLAIII
LAIFIKYK
Run BLAST on NCBI

transcript from alignment at scaffold_242:119754..120078

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054446 ID=TCONS_00054446|Name=TCONS_00054446|organism=Clytia hemisphaerica|type=transcript|length=325bp|location=Sequence derived from alignment at scaffold_242:119754..120078 (Clytia hemisphaerica)
tttgtatttaatGAAGATCGCCAGAATTATGATTGCCAGGACCAATCCAA
AAACTGTTAAAGTGAATATGGTATATTTTTCAGTCCCAGTGAAAACGAAA
TATTGATTTGTATAAGGATCAACACATTTCAATCTTTGGCCATCATCAAC
ATTATGAGCACCTGTACAAGGTATACAACCAGAGCTCGATTCAGGATTTG
GATTGACGTAGTTTGGTGGACACAATTGACATTTCCAACCATGTTTCTCA
ATGAACAGATCACTGCTCTCATTGAGCAAGCCATATATTTTCTCGTAGCC
TGGTcgacaatttacttttgaacaT

Coding sequence (CDS) from alignment at scaffold_242:119754..120078

>TCONS_00054446 ID=TCONS_00054446|Name=TCONS_00054446|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at scaffold_242:119754..120078 (Clytia hemisphaerica)
tttgtatttaatGAAGATCGCCAGAATTATGATTGCCAGGACCAATCCAA
AAACTGTTAAAGTGAATATGGTATATTTTTCAGTCCCAGTGAAAACGAAA
TATTGATTTGTATAAGGATCAACACATTTCAATCTTTGGCCATCATCAAC
ATTATGAGCACCTGTACAAGGTATACAACCAGAGCTCGATTCAGGATTTG
GATTGACGTAGTTTGGTGGACACAATTGACATTTCCAACCATGTTTCTCA
ATGAACAGATCACTGCTCTCATTGAGCAAGCCATATATTTTCTCGTAGCC
TGGTcgacaatttacttttgaaca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034310XLOC_034310Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054446-exon-scaffold_242-1491911889:119754..120078TCONS_00054446-exon-scaffold_242-1491911889:119754..120078Clytia hemisphaericaexon
TCONS_00054446-exon-scaffold_242-1510915933:119754..120078TCONS_00054446-exon-scaffold_242-1510915933:119754..120078Clytia hemisphaericaexon
TCONS_00054446-exon-scaffold_242-1575043694:119754..120078TCONS_00054446-exon-scaffold_242-1575043694:119754..120078Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054446-proteinTCONS_00054446-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:119754..120078 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.611647	0	0	0.67754	0.82484	0	1.17955	1.84047	0.257712	0.957652	0.929521	0.407354	0.406787	1.26736	0	0.931801	0.459161	0.941251	2.27568	1.70095	0	0.432678	0	0	0.656698	1.46522	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054446 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top