TCONS_00054456 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054456
Unique NameTCONS_00054456
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length498

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054456 ID=TCONS_00054456|Name=TCONS_00054456|organism=Clytia hemisphaerica|type=transcript|length=498bp
ATCTCAAATGAAGTGTAAACtacaaagagttttttgccaaatttgtctgA
TTATAACTAATCTAGGTTAAATTTCTGGACAGTTTGATTAAGCCCTGATA
Tttatattttctgaaatttgaagtcattaataaaaagattatccaggaat
aaaagtgaaattcaaaactttattttttccaaattttttcaccTATTTGG
GTGACATTACCAGATTCATGCTCTTAACAAGTCAACCATGTGAGaatttt
atattgaaatctgcaacaaaaatgtAAAGTGGTCTCTTAATGAGATTGCC
GCATTTCACACAACCCTTCTTTTCGGTGCGAACTTGGCCTTGCACAACGA
GTGGCTGTAAAATGTCAACCTTAAAATGAcctcttttatttgtttcaatc
agtGATCTTAAGGATCCTAAGTAAActagatcaattttttgaaccTGATG
ATGATATAGACACCAAAAAGcttcgaagaaaaataaaaattgtttcat
Run BLAST on NCBI

transcript from alignment at scaffold_242:541147..541644

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054456 ID=TCONS_00054456|Name=TCONS_00054456|organism=Clytia hemisphaerica|type=transcript|length=498bp|location=Sequence derived from alignment at scaffold_242:541147..541644 (Clytia hemisphaerica)
atgaaacaatttttatttttcttcgaagCTTTTTGGTGTCTATATCATCA
TCAggttcaaaaaattgatctagTTTACTTAGGATCCTTAAGATCactga
ttgaaacaaataaaagaggTCATTTTAAGGTTGACATTTTACAGCCACTC
GTTGTGCAAGGCCAAGTTCGCACCGAAAAGAAGGGTTGTGTGAAATGCGG
CAATCTCATTAAGAGACCACTTTacatttttgttgcagatttcaatataa
aattCTCACATGGTTGACTTGTTAAGAGCATGAATCTGGTAATGTCACCC
AAATAggtgaaaaaatttggaaaaaataaagttttgaatttcacttttat
tcctggataatctttttattaatgacttcaaatttcagaaaatataaATA
TCAGGGCTTAATCAAACTGTCCAGAAATTTAACCTAGATTAGTTATAATc
agacaaatttggcaaaaaactctttgtaGTTTACACTTCATTTGAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034320XLOC_034320Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054456-exon-scaffold_242-1491911889:541147..541644TCONS_00054456-exon-scaffold_242-1491911889:541147..541644Clytia hemisphaericaexon
TCONS_00054456-exon-scaffold_242-1510915933:541147..541644TCONS_00054456-exon-scaffold_242-1510915933:541147..541644Clytia hemisphaericaexon
TCONS_00054456-exon-scaffold_242-1575043694:541147..541644TCONS_00054456-exon-scaffold_242-1575043694:541147..541644Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:541147..541644 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.532279	0.527982	0.782351	0.459113	0.563075	0.17552	0.731912	0.838303	0.328125	0.390039	0.373118	1.34105	0.478047	1.11675	0.418244	0.235666	0.329768	0.248876	0.281878	0.30939	0.774423	1.61358	0	0	0.276575	0.386118	0.384651	0.590121	0.141296	0.457791
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054456 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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