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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054240 ID=TCONS_00054240|Name=TCONS_00054240|organism=Clytia hemisphaerica|type=transcript|length=2777bpRun BLAST on NCBI protein sequence of TCONS_00054240-protein >TCONS_00054240-protein ID=TCONS_00054240-protein|Name=TCONS_00054240-protein|organism=Clytia hemisphaerica|type=polypeptide|length=855bp MKLSKIFVIFLVLSVFLYTIDGSSRRSRRSSRRSRRSSRRGSHGKKCVLSRun BLAST on NCBI transcript from alignment at scaffold_242:963712..969333+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054240 ID=TCONS_00054240|Name=TCONS_00054240|organism=Clytia hemisphaerica|type=transcript|length=5622bp|location=Sequence derived from alignment at scaffold_242:963712..969333+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_242:963712..969333+ >TCONS_00054240 ID=TCONS_00054240|Name=TCONS_00054240|organism=Clytia hemisphaerica|type=CDS|length=12840bp|location=Sequence derived from alignment at scaffold_242:963712..969333+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054240 vs. Swiss-Prot (Human)
Match: NOTC2 (Neurogenic locus notch homolog protein 2 OS=Homo sapiens GN=NOTCH2 PE=1 SV=3) HSP 1 Score: 605.52 bits (1560), Expect = 0.000e+0 Identity = 343/846 (40.54%), Postives = 468/846 (55.32%), Query Frame = 2
Query: 368 PALTGKYCDRNTEK----CKCRSGYQPDWRKVCRDIDECKKANL--CKNGAECHNTEGSFTCKCQPGFKGKNCETNVNECHSSPCQNNGVCVDGINDYTCKCQTGFKGKDCETNVNECQPSPCQNNGVCVDGINDYTCKCQPGFTGNNCDTNVNECQSTPCKNKGVCVDGINDYTCKCQPGFKGKNCETNVDECQSSPCQNNGVCVDGINDYTCKCQPGFTGKNCETNVNECQSSPCQNNGVCVDGINDYTCKCRPGFKGKNCETNVNECQSSPCQNNGVCVDGINDYTCKCQPGFTGKNCETNVNECHPSLCQNNGVCVDGIN-------------------------------------DYTCKCQPGFTGKNCEANVNECQPSPCQNNGVCVDGINDYTCKCQPGFTGKNCEANVNECQPSPCQNNGVCVDGINDYTCKCQPGFTGKNCET----------------------------------------NFNECQSSLCQNNGVCVDGINDYTCKCQPGFTGKNCETNVDECQPSLCQNNGVCVDGINDYTCKCQPGFTGKNCETNVNECQPSLCQNNGVCVDGINDYTCKCQPGFTGKNCETNVNECQPSLCQNNGVCVDGINDYTCKCQPGFTGKNCETNVIKCQTNPCKNQGICKETSQGYSCTCLVGWQGKNCETKTNPCTSKPCENEGICSVKENNTYFCQCKDGWSGQNCEVERNECDSSP----------CVNAFQCIDGKNDYTCVCKPGWEGKRCQYNKNECASSPCINAFTCQDLLNDYRCFCRPGWKGKNCDQQIPDPCKSSPCVRGVCHKSGPLDYVCVCPKGFTGLNC 2626
P G CD N C C GY+ D+DEC AN C++ +C NT+G+F C+C G+ G CE ++NECHS PCQN+ C+D I +TC C GFKG CE +NECQ +PC NNG CVD +N + C C PGFTG C ++++C STPC N C+D N Y C+C GF G CE N+D C PC ++G C DGI+ YTC C PG+ G C ++EC SSPC N+G C+D +N Y C C+PG G NCE N ++C S+PC +G+C+DGIN Y+C C PGFTG+ C +++EC + C+ C++G+N Y C C G+ G NCE + NEC +PCQN G C + +N Y C C+ GF G NC+ N++EC +PC N G C D I+ YTC C +TGKNC+T + +EC S C N+G+C + Y C+C PGF+G +CE ++D+C + CQN G C+DG+N ++C C PGFTG C+T++NEC C+N G C D +N YTCKCQ GF G +CE N+NEC S C N G CVDGIN ++C C GFTG C + +C ++PC N+G C + Y C+C +G+ GKNC+T N C+ PC+N+G C K+ + C C GW+G C+V CD + C ++ CI+ N + C C G+ G C+ +ECAS+PC + TC D + YRC C PG++G NC+ ++ D C++ PC G + C CP G GL C
Sbjct: 383 PCHKGALCDTNPLNGQYICTCPQGYK--GADCTEDVDECAMANSNPCEHAGKCVNTDGAFHCECLKGYAGPRCEMDINECHSDPCQNDATCLDKIGGFTCLCMPGFKGVHCELEINECQSNPCVNNGQCVDKVNRFQCLCPPGFTGPVCQIDIDDCSSTPCLNGAKCIDHPNGYECQCATGFTGVLCEENIDNCDPDPC-HHGQCQDGIDSYTCICNPGYMGAICSDQIDECYSSPCLNDGRCIDLVNGYQCNCQPGTSGVNCEINFDDCASNPCI-HGICMDGINRYSCVCSPGFTGQRCNIDIDECASNPCRKGATCINGVNGFRCICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGINCEVDKNECLSNPCQNGGTCDNLVNGYRCTCKKGFKGYNCQVNIDECASNPCLNQGTCFDDISGYTCHCVLPYTGKNCQTVLAPCSPNPCENAAVCKESPNFESYTCLCAPGWQGQRCTIDIDECISKPCMNHGLCHNTQGSYMCECPPGFSGMDCEEDIDDCLANPCQNGGSCMDGVNTFSCLCLPGFTGDKCQTDMNECLSEPCKNGGTCSDYVNSYTCKCQAGFDGVHCENNINECTESSCFNGGTCVDGINSFSCLCPVGFTGSFCLHEINECSSHPCLNEGTCVDGLGTYRCSCPLGYTGKNCQTLVNLCSRSPCKNKGTCVQKKAESQ-CLCPSGWAGAYCDVPNVSCDIAASRRGVLVEHLCQHSGVCINAGNTHYCQCPLGYTGSYCEEQLDECASNPCQHGATCSDFIGGYRCECVPGYQGVNCEYEV-DECQNQPCQNGGTCIDLVNHFKCSCPPGTRGLLC 1222 HSP 2 Score: 527.324 bits (1357), Expect = 4.080e-162 Identity = 316/806 (39.21%), Postives = 425/806 (52.73%), Query Frame = 2
Query: 470 CKKANLCKNGAECHN-TEGSFTCKCQPGFKGKNCETNVNECHSSPCQNNGVCVDGINDYTCKCQTGFKGKDCETNVNECQ-PSPCQNNGVCVDGINDYTCKCQPGFTGNNCDTNVNECQSTPCKNKGVCVD-GINDYTCKCQPGFKGKNCETNVDECQSSPCQNNGVCVDGINDYTCKCQPGFTGKNCETNVNECQSSP--CQNNGVCVDGINDYTCKCRPGFKGKNCETNVNECQSSPCQNNGVCVDGI---------------------------------------NDYTCKCQPGFTGKNCETNVNECHPS---LCQNNGVCVDGINDYTCKCQPGFTGKNCEANVNECQPSPCQNNGVCVDGINDYTCKCQPGFTGKNCEANVNECQPSPCQNNGVCVDGINDYTCKCQPGFTGKNCETNFNECQSSLCQNNGVCVDGINDYTCKCQPGFTGKNCETNVDECQPSLCQNNGVCVDGINDYTCKCQPGFTGKNCETNVNECQPSLCQNNGVCVDGINDYTCKCQPGFTGKNCETNVNECQPSLCQNNGVCVDGINDYTCKCQPGFTGKNCETNVIKCQTNPCKN-------------------------------------QGICKETSQGYSCTCLVGWQGKNCETKTNPCTSKPCENEGICSVKENNTYFCQCKDGWSGQNCEVERNECDSSPCVNAFQCIDGKNDYTCVCKPGWEGKRCQYNKNECASSPCINAFTCQDLLN--DYRCFCRPGWKGKNCDQQIPDPCKSSPCV-RGVCHKSGPLDYVCVCPKGFTGLNC 2626
C + C NG CH + ++ C CQ GF GK C+ + C S PC N C N ++CKC TGF G+ CET+VNEC P CQ+ G C++ Y C+C GFTG CD+ C +PC N G C G + C C PGF+G CE N+D+C + CQN GVCVDG+N Y C+C P +TG+ C +V+EC P CQN G C + Y C C G+ G +C N+++C + C C+D + Y C C G+ G +C +V+EC + C++ G CV+ + C+C G+ G CE ++NEC PCQN+ C+D I +TC C PGF G +CE +NECQ +PC NNG CVD +N + C C PGFTG C+ + ++C S+ C N C+D N Y C+C GFTG CE N+D C P C ++G C DGI+ YTC C PG+ G C ++EC S C N+G C+D +N Y C CQPG +G NCE N ++C + C +G+C+DGIN Y+C C PGFTG+ C ++ +C +NPC+ G C GY C C GW G NCE N C S PC+N G C N Y C CK G+ G NC+V +EC S+PC+N C D + YTC C + GK CQ C+ +PC NA C++ N Y C C PGW+G+ C I D C S PC+ G+CH + Y+C CP GF+G++C
Sbjct: 109 CFVSRPCLNGGTCHMLSRDTYECTCQVGFTGKECQW-TDACLSHPCANGSTCTTVANQFSCKCLTGFTGQKCETDVNECDIPGHCQHGGTCLNLPGSYQCQCPQGFTGQYCDSLYVPCAPSPCVNGGTCRQTGDFTFECNCLPGFEGSTCERNIDDCPNHRCQNGGVCVDGVNTYNCRCPPQWTGQFCTEDVDECLLQPNACQNGGTCANRNGGYGCVCVNGWSGDDCSENIDDCAFASCTPGSTCIDRVASFSCMCPEGKAGLLCHLDDACISNPCHKGALCDTNPLNGQYICTCPQGYKGADCTEDVDECAMANSNPCEHAGKCVNTDGAFHCECLKGYAGPRCEMDINECHSDPCQNDATCLDKIGGFTCLCMPGFKGVHCELEINECQSNPCVNNGQCVDKVNRFQCLCPPGFTGPVCQIDIDDCSSTPCLNGAKCIDHPNGYECQCATGFTGVLCEENIDNCDPDPC-HHGQCQDGIDSYTCICNPGYMGAICSDQIDECYSSPCLNDGRCIDLVNGYQCNCQPGTSGVNCEINFDDCASNPCI-HGICMDGINRYSCVCSPGFTGQRCNIDIDECASNPCRKGATCINGVNGFRCICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGINCEVDKNECLSNPCQNGGTCD-NLVNGYRCTCKKGFKGYNCQVNIDECASNPCLNQGTCFDDISGYTCHCVLPYTGKNCQTVLAPCSPNPCENAAVCKESPNFESYTCLCAPGWQGQRCTIDI-DECISKPCMNHGLCHNTQG-SYMCECPPGFSGMDC 908 HSP 3 Score: 526.939 bits (1356), Expect = 6.079e-162 Identity = 306/760 (40.26%), Postives = 423/760 (55.66%), Query Frame = 2
Query: 362 CFPALTGKYCDRNTEKCK---CRSGYQ---------------PDWRKVCRDIDECKKANLCKNGAECHNTEGSFTCKCQPGFKGKNCETNVNECHSSPCQNNGVCVDGINDYTCKCQTGFKGKDCETNVNECQPSPCQNNGVCVDGINDYTCKCQPGFTGNNCDTNVNECQSTPCKNKGVCVDGIN--DYTCKCQPGFKGKNCETNVDECQSSPCQNNGVCVDGINDYTCKCQPGFTGKNCETNVNECQSSPCQNNGVCVDGINDYTCKCRPGFKGKNCETNVNECQSSPCQNNGVCVDGINDYTCKCQPGFTGKNCETNVNECHPSLCQNNGVCVDGINDYTCKCQPGFTGKNCEANVNECQPSPCQNNGVCVDGINDYTCKCQPGFTGKNCEANVNECQPSPCQNNGVCVDGINDYTCKCQPGFTGKNCETNFNECQSS----------LCQNNGVCVDGINDYTCKCQPGFTGKNCETNVDECQPSLCQNNGVCVDGINDYTCKCQPGFTGKNCETNVNECQPSLCQNNGVCVDGINDYTCKCQPGFTGKNCETNVNEC-QPSLCQNNGVCVDGINDYTCKCQPGFTGKNCETNVIKCQTNPCKNQGI--CKETSQGYSCTCLVGWQGKNCETKTNPCTSKPCENEGICSVKEN--NTYFCQCKDGWSGQNCEVERNECDSSPCVNAFQCIDGKNDYTCVCKPGWEGKRCQYNKNECASSPCINAFTC--QDLLNDYRCFCRPGWKGKNCDQQIPDP 2530
C P TG+ C+ + ++C CR G P ++EC +N C +G C + C C G+ G NCE + NEC S+PCQN G C + +N Y C C+ GFKG +C+ N++EC +PC N G C D I+ YTC C +TG NC T + C PC+N VC + N YTC C PG++G+ C ++DEC S PC N+G+C + Y C+C PGF+G +CE ++++C ++PCQN G C+DG+N ++C C PGF G C+T++NEC S PC+N G C D +N YTCKCQ GF G +CE N+NEC S C N G CVDGIN ++C C GFTG C +NEC PC N G CVDG+ Y C C G+TGKNC+ VN C SPC+N G CV + C C G+ G C+ C + LCQ++GVC++ N + C+C G+TG CE +DEC + CQ+ C D I Y C+C PG+ G NCE V+ECQ CQN G C+D +N + C C PG G CE N+++C + C N G C+D I Y+C+C PGF G+ CE ++ +C +NPC ++G C + + Y C C + G++CET + C PC N G C+V N + + C+C G+SG C+ + C C QC+ + C C + C+ + CASSPC + +C Q Y C C P + G C+ P
Sbjct: 670 CSPGFTGQRCNIDIDECASNPCRKGATCINGVNGFRCICPEGPHHPSCYSQVNECL-SNPCIHG-NCTGGLSGYKCLCDAGWVGINCEVDKNECLSNPCQNGGTCDNLVNGYRCTCKKGFKGYNCQVNIDECASNPCLNQGTCFDDISGYTCHCVLPYTGKNCQTVLAPCSPNPCENAAVCKESPNFESYTCLCAPGWQGQRCTIDIDECISKPCMNHGLCHNTQGSYMCECPPGFSGMDCEEDIDDCLANPCQNGGSCMDGVNTFSCLCLPGFTGDKCQTDMNECLSEPCKNGGTCSDYVNSYTCKCQAGFDGVHCENNINECTESSCFNGGTCVDGINSFSCLCPVGFTGSFCLHEINECSSHPCLNEGTCVDGLGTYRCSCPLGYTGKNCQTLVNLCSRSPCKNKGTCVQKKAESQCLCPSGWAGAYCDVPNVSCDIAASRRGVLVEHLCQHSGVCINAGNTHYCQCPLGYTGSYCEEQLDECASNPCQHGATCSDFIGGYRCECVPGYQGVNCEYEVDECQNQPCQNGGTCIDLVNHFKCSCPPGTRGLLCEENIDDCARGPHCLNGGQCMDRIGGYSCRCLPGFAGERCEGDINECLSNPCSSEGSLDCIQLTNDYLCVCRSAFTGRHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQ---SSCGQVKCRKGEQCVHTASGPRCFCP---SPRDCE---SGCASSPCQHGGSCHPQRQPPYYSCQCAPPFSGSRCELYTAPP 1418 HSP 4 Score: 467.233 bits (1201), Expect = 5.047e-141 Identity = 288/756 (38.10%), Postives = 416/756 (55.03%), Query Frame = 2
Query: 401 TEKCKCRSGYQPDWRKVCRDIDECKKANLCKNGAECHNTEGSFTCKCQPGFKGKNCETNVNECHSSPCQNNGVCVD--GINDYTCKCQTGFKGKDCETNVNE--CQPSPCQNNGVC-VDGINDYTCKCQPGFTGNNCDTNVNECQSTPCKNKGVCVDGINDYTCKCQPGFKGKNCETNVDECQ-SSPCQNNGVCVDGINDYTCKCQPGFTGKNCETNVNECQSSPCQNNGVCVD-GINDYTCKCRPGFKGKNCETNVNECQSSPCQNNGVCVDGINDYTCKCQPGFTGKNCETNVNEC--HPSLCQNNGVCVDGINDYTCKCQPGFTGKNCEANVNECQPSPCQNNGVCVDGINDYTCKCQPGFTGKNCEANVNECQPSPCQNNGVC-VDGIN-DYTCKCQPGFTGKNCETNFNECQ---SSLCQNNGVCVDGINDYTCKCQPGFTGKNCETNVDECQPSLCQNNGVCVDGINDYTCKCQPGFTGKNCETNVNECQPSLCQNNGVCVDGINDYTCKCQPGFTGKNCETNVNECQPSLCQNNGVCVDGINDYTCKCQPGFTGKNCETNVIKCQTNPCKNQGICKETSQGYSCTCLVGWQGKNCETKTNPCTSKPCENEGICSVKENNTYFCQCKDGWSGQNCEVERNECDSSPCVNAFQCIDGKNDYTCVCKPGWEGKRCQYNKNECASSPCINAFTCQDLLNDYRCFCRPGWKGKNCDQQIPDPCKSSPCVRGVCHKSGPLDYVCVCPKGFTGLNC 2626
+CR GY+P C +C HN G+ CKC GF G+ C+ + + C + CQN G CV + TC+C +GF G+DC+ + + PC N G C + + Y C CQ GFTG C + C S PC N C N ++CKC GF G+ CET+V+EC CQ+ G C++ Y C+C GFTG+ C++ C SPC N G C G + C C PGF+G CE N+++C + CQN GVCVDG+N Y C+C P +TG+ C +V+EC P+ CQN G C + Y C C G++G +C N+++C + C C+D + ++C C G G C + + C +PC +C + +N Y C C G+ G +C + +EC S+ C++ G CV+ + C+C G+ G CE +++EC CQN+ C+D I +TC C PGF G +CE +NECQ + C NNG CVD +N + C C PGFTG C+ ++++C + C N C+D N Y C+C GFTG CE N+ C +PC + G C++ Y+C C G+ G C + + C S PC N+G C + N Y C C+ G SG NCE+ ++C S+PC++ C+DG N Y+CVC PG+ G+RC + +ECAS+PC TC + +N +RC C G +C Q+ + C S+PC+ G C G Y C+C G+ G+NC
Sbjct: 23 AHALQCRDGYEP-----------CVNEGMC---VTYHN--GTGYCKCPEGFLGEYCQ-HRDPCEKNRCQNGGTCVAQAMLGKATCRCASGFTGEDCQYSTSHPCFVSRPCLNGGTCHMLSRDTYECTCQVGFTGKECQW-TDACLSHPCANGSTCTTVANQFSCKCLTGFTGQKCETDVNECDIPGHCQHGGTCLNLPGSYQCQCPQGFTGQYCDSLYVPCAPSPCVNGGTCRQTGDFTFECNCLPGFEGSTCERNIDDCPNHRCQNGGVCVDGVNTYNCRCPPQWTGQFCTEDVDECLLQPNACQNGGTCANRNGGYGCVCVNGWSGDDCSENIDDCAFASCTPGSTCIDRVASFSCMCPEGKAGLLCHLD-DACISNPCHKGALCDTNPLNGQYICTCPQGYKGADCTEDVDECAMANSNPCEHAGKCVNTDGAFHCECLKGYAGPRCEMDINECHSDPCQNDATCLDKIGGFTCLCMPGFKGVHCELEINECQSNPCVNNGQCVDKVNRFQCLCPPGFTGPVCQIDIDDCSSTPCLNGAKCIDHPNGYECQCATGFTGVLCEENIDNCDPDPC-HHGQCQDGIDSYTCICNPGYMGAICSDQIDECYSSPCLNDGRC-IDLVNGYQCNCQPGTSGVNCEINFDDCASNPCIHGI-CMDGINRYSCVCSPGFTGQRCNIDIDECASNPCRKGATCINGVNGFRCICPEGPHHPSCYSQV-NECLSNPCIHGNC-TGGLSGYKCLCDAGWVGINC 754 The following BLAST results are available for this feature:
BLAST of TCONS_00054240 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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