TCONS_00054386 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054386
Unique NameTCONS_00054386
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length771

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054386 ID=TCONS_00054386|Name=TCONS_00054386|organism=Clytia hemisphaerica|type=transcript|length=771bp
taGAGGGGCCGTCGATCTCCTCCCGGTTGAATTTGGGTTATGATTTTGTC
TCAAGGTCTTTCGCCTTTTATCGCCTTGATGATTTTTTACTCCGCATTTG
TGaATGCATTACCGATTGAATCCAATTCGAAAAATGCCATGAAAAATGCC
ACCGATCAATTCGAGACCTCACAACCAAAGACAGATTTAGAAACGAACAA
AACGATACTACTGAGCCAACAGAATCACCGTCACTTTGAACTGAACAACA
CACAGCTTCACCAGTTTCTAAAGCTTCCATCTAGGTCGAAGGTCGTTGAT
CATAATGATACAAAAATAGTAGCTGTAAATTCTAAAGTGAAAGATCactt
tttgaagaatattaGTCACACAGTTACAGCCAAAGAATTGCAGTTTTTGA
ATGATACCATTATCGAAATGAACTATACTAGAAGTGGCTATATGTGTCCA
TTATTGCGATGTAAAAGATGTCCTTTTGGTTATGTCCTTGATGGATCATC
TTGTCCGGTTTGTGTCTGCAAAGAAAGACCAGatTGTCCAGATCTTTCAA
AATGCAAGAAGAAATGCTTTCTGTCTAGTTTTATGAAGGATATCCATGGT
TGCACATTATGTAAATGCAAACGTTTGAGAGCATGTCCATTGTTGCATTG
TAATTTGAATTGTTTCTATGGCTACCAAGAAGATGAGTTTGGTTGTCGTA
TATGCAAATGTAAAGAGAAGTCCAAGATGTGTCCATCGATAGcgaattgc
aaaaaaagatgTTATTTTGGG
Run BLAST on NCBI

transcript from alignment at scaffold_242:1043232..1046599-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054386 ID=TCONS_00054386|Name=TCONS_00054386|organism=Clytia hemisphaerica|type=transcript|length=3368bp|location=Sequence derived from alignment at scaffold_242:1043232..1046599- (Clytia hemisphaerica)
TAGAGGGGCCGTCGATCTCCTCCCGGTTGAATTTGGGTTATGATTTTGTC
TCAAGGTCTTTCGCCTTTTATCGCCTTGATGATTTTTTACTCCGCATTTG
TGGTATGTGTTTTTTGGGAAGTTTATAAGCTAGTGGTGTGGTGAACATTT
CAACTAGAGTCTTTGCCAAAGCTGACAAATATGTTCCTTTCATTCGAAGT
GATAATCTTTTTCATAATAGGGTGACTTTAAAGAAAATTTAAGTGGTAAA
ATTTAACAAATCTATTTTTTCAGAATGCATTACCGATTGAATCCAATTCG
AAAAATGCCATGAAAAATGCCACCGATCAATTCGAGACCTCACAACCAAA
GACAGATTTAGAAACGAACAAAACGATACTACTGAGCCAACAGAATCACC
GTCACTTTGAACTGAACAACACACAGCTTCACCAGTTTCTAAAGCTTCCA
TCTAGGTCGAAGGTCGTTGATCATAATGATACAAAAATAGTAGCTGTAAA
TTCTAAAGTGAAAGATCACTTTTTGAAGAATATTAGTCACACAGTTACAG
CCAAAGAATTGCAGTTTTTGAATGATACCATTATCGAAATGAACTATACT
AGAAGTGAGAAACACATTTAACCTAGATAAAGTCTAGATAAAGTTAGAAA
ACGGCCCAGATCCCCGAGATATCTTGGCAAAGAGCGATTACAATGTTCTG
TTTGCCAGAGTTTTTTTGACTTTGTACAGCGGAGTTTCTTTTACTCGAAC
CTCTCTAACTTGAACGTCTCCTTAACTCGAATAAATTTGTGTTCCCTTCA
CTTAACAATGCCTTATAACCCTTACTCCGTAACTCGAATTCTCCTTGACT
CTTACAAATTTGTGTTCCCCATGCATGTTCGAGTTATGGAGACTCAACTG
TATATCGGCTCATATGGCTAGTATCCCTATTTGATATTATAAACACTGTT
GCGGAAAGGTTTCATTCTCATATCTGTATGTTAGGATTGAACTTTTTCTA
ACTGTATACTGTCTAACATGTAATTTTAGAGTCAAGCTTAAGTTAAAGGG
CTTCAAACATTGTCAACTTGCCAGCTATTAAGTAAGTAAGTAAGTAAGTA
AGTAATTTATTTGTCCTAAAAAGCGAGACTAGCGACCACACTCATAGACA
TAAAGCTAAACTAAGGAGGTGGCCGCATTAATGCAGCTCAACCCCTTGGG
GTATTCCCAGAAAGTTGTAAATCTTTCTTTTACGATTTTTAGGTGGCTAT
ATGTGTCCATTATTGCGATGTAAAAGATGTCCTTTTGGTTATGTCCTTGA
TGGATCATCTTGTCCGGTTTGTGTCTGCAAAGAAAGACCAGGTACGGTTA
AATGTCATCTTGATCGGTACAATTACACATTCAATTATATACAATTTCGA
GCTGGTCAAGGTGTCTTAAATGAAAAGGTGTCATATATGGACAAAAGAAT
TCTGTGTGAATCAGGGTAATATTGGTCTGTTCCAGAAATATTCTGTACCT
CCTATGTTGAGGAGGTGTGACGTCTAGGGTAGTTTGGAATTAAAAAATTG
AGAAAAATGAGAAAAATACCCAAAGAGGTCCTAGACTAGTAAACAACGTC
GTTGTTTTTCGCTGCAGCTTACGCTTGCAATGGGCTCACTACGTCCGTCG
AATACAACTTCCCAAATCATTTTCCCGTGGCAATTTCTATTTTTTATAAG
AACACTCTATAAGCACTTTTTCCTGCGTTCCTGTCCAAGGAAAGGCAGAT
GCTTGCTAGTGTAATGCGAGGTCATGAAAAATTAAAAAACAATCCAGAGG
TTCCTTGTTCTAAAAAAAACCTTCTCTGCATAAGGCGGGGGATACAAATT
ATTTCTAGAATAGCCCATTGATACCCACAAGCTACCTGATCTAGGATTTC
GTTTTCTCTTTTTTAGATTGTCCAGATCTTTCAAAATGCAAGAAGAAATG
CTTTCTGTCTAGTTTTATGAAGGATATCCATGGTTGCACATTATGTAAAT
GCAAACGTTTGAGAGGTAATCGTGTTTATTTATTTCATAACTCAGTTAGC
GTTGCCAAGAGAGGCGCAAAATTTGTGTAGGAAGGCAGATTCTTATGCTA
TTATAATTATCTTTTAATACCATGAATAGATAATTACAGCGTCATAAAAA
TCTGCTCTCCTACACAAATTTTGCGCCCCTCTTGGCTACGCTACTGTTAA
CTTATCGTGGAATTGAAATTGAATGTTTGTCAAACTTTTACAGTGCCCTC
CACCTACCAATTACCTACATTTCCCACGAACTTGGGGATTCTGTACTCCA
TTTTCTCAAAGTTTACACTTTCTCTTTTTAACTTAGCGATCTTTTACGCA
AGTCCAAATCAAAGTTTTTTTCGTTCGTGATGTAGGCTGAAATTACGCAT
CTTTAACTTGAAAGTAAAATTAGATTTGGCCTAAAATTGGTGTCTACGTT
CCTTCAGGCTCGTGTTTGCTCCCGTGAGAGGTATTAGGTTTACGAGGTAC
GTCCGAACCAAAGATCGAAAATATACCCTTAGAGAGAAAGAAAATTCACG
TTTTGAGACCCTTAGAGATCCATATACTTATAAGCGTTATGCTTATAAAA
AAACATGAAGTGTAATAAGAAACGGCCAGGAAAAGGGTAAATAAAGGCTT
GCAGAGGTTGCATGATTTCCCATGATTTCCACTTCGCTTTTTGATTACAT
ATTTTCTTTTTTCCACGTGCAATATAATTTTCTTTCCAGCATGTCCATTG
TTGCATTGTAATTTGAATTGTTTCTATGGCTACCAAGAAGATGAGTTTGG
TTGTCGTATATGCAAATGTAAAGAGAAGTCCAGTAAGAATTCATTGTATT
TTCCAGAGCTTGTACAAGGGCCGCATACAACGTTAACCAGATTAATCCCC
GCAATATTGTATACAACAGTCTACGATTCCAAGTGGATTTTAGAGTTAAA
TCCTGGGGGAAGGTACTTGGCACAAGTGTCACAAAGAATATCCCTCACCT
ACATTTGGGTTAAATCACACGAACTATTAGCTTTATAACAGAAAACTTGT
TGAAATACTGACTATGTAAAATATTTTTTTCCCGATTCCGAAATTCTGCG
AAACCTGTTGCTAAATTCCGTCGATAATAAAATTGCCCAATTTTTTGTCA
GAGGACCTAATTTCCGAAACTCCGTCGAGTTCTGCCATTCCGTTCTAAAG
AAGGGCCGGTTCTGCTCCTCCGCCAAACGTGAAACCTCACCCTTCCCTCC
CCCAATAAGATAAACGGATAGATGTCTTAACTGCCGGATTACACACCATA
ACCTTGGATCTATTTTTACAGAGATGTGTCCATCGATAGCGAATTGCAAA
AAAAGATGTTATTTTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034284XLOC_034284Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054386-exon-scaffold_242-1575043694:1046498..1046599TCONS_00054386-exon-scaffold_242-1575043694:1046498..1046599Clytia hemisphaericaexon
TCONS_00054386-exon-scaffold_242-1575043694:1045996..1046326TCONS_00054386-exon-scaffold_242-1575043694:1045996..1046326Clytia hemisphaericaexon
TCONS_00054386-exon-scaffold_242-1575043694:1045259..1045357TCONS_00054386-exon-scaffold_242-1575043694:1045259..1045357Clytia hemisphaericaexon
TCONS_00054386-exon-scaffold_242-1575043694:1044585..1044683TCONS_00054386-exon-scaffold_242-1575043694:1044585..1044683Clytia hemisphaericaexon
TCONS_00054386-exon-scaffold_242-1575043694:1043768..1043860TCONS_00054386-exon-scaffold_242-1575043694:1043768..1043860Clytia hemisphaericaexon
TCONS_00054386-exon-scaffold_242-1575043694:1043232..1043278TCONS_00054386-exon-scaffold_242-1575043694:1043232..1043278Clytia hemisphaericaexon
TCONS_00054386-exon-scaffold_242-1510915933:1046498..1046599TCONS_00054386-exon-scaffold_242-1510915933:1046498..1046599Clytia hemisphaericaexon
TCONS_00054386-exon-scaffold_242-1510915933:1045996..1046326TCONS_00054386-exon-scaffold_242-1510915933:1045996..1046326Clytia hemisphaericaexon
TCONS_00054386-exon-scaffold_242-1510915933:1045259..1045357TCONS_00054386-exon-scaffold_242-1510915933:1045259..1045357Clytia hemisphaericaexon
TCONS_00054386-exon-scaffold_242-1510915933:1044585..1044683TCONS_00054386-exon-scaffold_242-1510915933:1044585..1044683Clytia hemisphaericaexon
TCONS_00054386-exon-scaffold_242-1510915933:1043768..1043860TCONS_00054386-exon-scaffold_242-1510915933:1043768..1043860Clytia hemisphaericaexon
TCONS_00054386-exon-scaffold_242-1510915933:1043232..1043278TCONS_00054386-exon-scaffold_242-1510915933:1043232..1043278Clytia hemisphaericaexon
TCONS_00054386-exon-scaffold_242-1491911889:1046498..1046599TCONS_00054386-exon-scaffold_242-1491911889:1046498..1046599Clytia hemisphaericaexon
TCONS_00054386-exon-scaffold_242-1491911889:1045996..1046326TCONS_00054386-exon-scaffold_242-1491911889:1045996..1046326Clytia hemisphaericaexon
TCONS_00054386-exon-scaffold_242-1491911889:1045259..1045357TCONS_00054386-exon-scaffold_242-1491911889:1045259..1045357Clytia hemisphaericaexon
TCONS_00054386-exon-scaffold_242-1491911889:1044585..1044683TCONS_00054386-exon-scaffold_242-1491911889:1044585..1044683Clytia hemisphaericaexon
TCONS_00054386-exon-scaffold_242-1491911889:1043768..1043860TCONS_00054386-exon-scaffold_242-1491911889:1043768..1043860Clytia hemisphaericaexon
TCONS_00054386-exon-scaffold_242-1491911889:1043232..1043278TCONS_00054386-exon-scaffold_242-1491911889:1043232..1043278Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1043232..1046599 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.126255	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.0127515	3.56375	0.0865605	0.0999467	0.00573926	0.00224879
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054386 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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