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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054395 ID=TCONS_00054395|Name=TCONS_00054395|organism=Clytia hemisphaerica|type=transcript|length=1691bp
gctgcttttattggtcattcatttgagggctatgcatgtttgtctccact
gatgcaagttacccgacttcacggtactttTCCTTCAAGTTAGTGCGGAT
AAACTAGATTTCTCCTCTAATCTTTAGTGCGATAGGAAAGTCAACGGttc
aaagtaatttattttCTCCCATTATGAGTGCGACacctcaaaaatattta
tttaatcGGCCGcattaaattagagaaatgaCGGTATAGTTTAATCGTGA
ACTTAAATATTTGCTTCTAATCTAATCGATCGTTTGGATTGGATTTAATC
TTATCTGTAGCTGTCATTCGTCGATTATTCATTTTAATGGTTGAAGATAT
ATTTTCAAGTTGCCTGAAAAAAGATTCTACGACGCACGGAGGCCAGTTGT
AAGTTATTAGGGATCTTGGGATTGGCTCTCTACACCAAGGCGAAGATAAT
CCTTTAATGATCGAACTCCTGGTGGCATTCGAATATATGTCTCACGGGGT
TTCCTCATTGATATATTTTCGATTTCATCTGAATGGTCGAAGATTGTTGG
TTCACCTTCATAAAGATATCCTCGCATACAAGATGCACCAATGCGTTTTA
TCTTTTGCTCAAGTTGTTCGCTGATGGCTGATGTACTAGTTTGCAAGCCA
CACCAGATCTTGACTGACATTAACCTCATTTTTTTCCACGATTCAAATGC
AATACAATCCCTTGCATGTTGATGTTTATAAGCTCCCATATGTTGTATGT
ACGGATTATAAGCCAGTATAATTTCCTGGAATATATTCAAGCCACATTCG
ATTAGCTCTTCAGCCGTTAAGCTGAATGGAGAATGATAAGTGAGCCTGTA
CGGAGCTGGTTGACCTTCTCTCAGCTTGACTGATGCTGCAGTACACAATT
GACGAAGCTGTGATAAATACCCATTGGTCTCCAACCCATGAACAAAGGGT
AGAATAGGAGCAGCCTTTGACATATCTGTGTTTGGCAATGTTAGGAAAAA
TAACCGTTGGATTTTGAAATCGGGTTTTAAATGGATAACATGATCCTTGA
TAACCTCGGCAAGTTGCGAGACTTGAATAATATTATTAAAAGAAACGTTA
ACATTTTTAGTGTGTAGCATGAAGAGCGAGTGCAACCGTTTCGCTTCGTC
ACTTTCCAACGGACATTTGAAGGAAGATAAGGTGACAGATTTTAAACGAA
ACATTCCTTTGGTAGCTTGTTTCTCTAAATAATCCAGACattgtttttca
taattgtTCAATGAACCATTGGTAATCTGAATATGTAAGTGTTCGTTATa
ttctattttgttttgatactcATAAAATACACTCAGATAATATGCTTTAC
CGTCAATGAAAAAATGTTGAGGATTTTTAGGCTCTTTTGCTAATAAGTGA
TCAACCAATAATTCCTTTCTAGATTCTGTTGAAGACTTTGTAAAAATGGA
TGTGAACTTTCTTACGATTGGCGAAGATTGTGAGTCGTAAAGAGAACCTC
CAACCAATCCGGATAACATTGATAAGATATACGGATTTGTGATCCGGGCA
TCTACTGTTCCGGTATCAAATAAATGTAAAGCAGTCAGAAACTCATTGAA
TGAATAATGAAGAAATTGGTACCGGGTACCCTCTATTGAATCCGGGTAAT
CAATTTCGATAATTAAACCAGTATCATCCAACACTTCTTTC Run BLAST on NCBI transcript from alignment at scaffold_242:1320011..1321759- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054395 ID=TCONS_00054395|Name=TCONS_00054395|organism=Clytia hemisphaerica|type=transcript|length=1749bp|location=Sequence derived from alignment at scaffold_242:1320011..1321759- (Clytia hemisphaerica)
GCTGCTTTTATTGGTCATTCATTTGAGGGCTATGCATGTTTGTCTCCACT
GATGCAAGTTACCCGACTTCACGGTACTTTTCCTTCAAGTTAGTGCGGAT
AAACTAGATTTCTCCTCTAATCTTTAGTGCGATAGGAAAGTCAACGGTTC
AAAGTAATTTATTTTCTCCCATTATGAGTGCGACACCTCAAAAATATTTA
TTTAATCGGCCGCATTAAATTAGAGAAATGACGGTATAGTTTAATCGTGA
ACTTAAATATTTGCTTCTAATCTAATCGATCGTTTGGATTGGATTTAATC
TTATCTGTAGCTGTCATTCGTCGATTATTCATTTTAATGGTTGAAGATAT
ATTTTCAAGTTGCCTGAAAAAAGATTCTACGACGCACGGAGGCCAGTTGT
AAGTTATTAGGGATNAGTTGCCTGAAAAAAAATTCTACGACGCACGGAGG
CCAGTTGTAAGTTATTAGGGATCTTGGGATTGGCTCTCTACACCAAGGCG
AAGATAATCCTTTAATGATCGAACTCCTGGTGGCATTCGAATATATGTCT
CACGGGGTTTCCTCATTGATATATTTTCGATTTCATCTGAATGGTCGAAG
ATTGTTGGTTCACCTTCATAAAGATATCCTCGCATACAAGATGCACCAAT
GCGTTTTATCTTTTGCTCAAGTTGTTCGCTGATGGCTGATGTACTAGTTT
GCAAGCCACACCAGATCTTGACTGACATTAACCTCATTTTTTTCCACGAT
TCAAATGCAATACAATCCCTTGCATGTTGATGTTTATAAGCTCCCATATG
TTGTATGTACGGATTATAAGCCAGTATAATTTCCTGGAATATATTCAAGC
CACATTCGATTAGCTCTTCAGCCGTTAAGCTGAATGGAGAATGATAAGTG
AGCCTGTACGGAGCTGGTTGACCTTCTCTCAGCTTGACTGATGCTGCAGT
ACACAATTGACGAAGCTGTGATAAATACCCATTGGTCTCCAACCCATGAA
CAAAGGGTAGAATAGGAGCAGCCTTTGACATATCTGTGTTTGGCAATGTT
AGGAAAAATAACCGTTGGATTTTGAAATCGGGTTTTAAATGGATAACATG
ATCCTTGATAACCTCGGCAAGTTGCGAGACTTGAATAATATTATTAAAAG
AAACGTTAACATTTTTAGTGTGTAGCATGAAGAGCGAGTGCAACCGTTTC
GCTTCGTCACTTTCCAACGGACATTTGAAGGAAGATAAGGTGACAGATTT
TAAACGAAACATTCCTTTGGTAGCTTGTTTCTCTAAATAATCCAGACATT
GTTTTTCATAATTGTTCAATGAACCATTGGTAATCTGAATATGTAAGTGT
TCGTTATATTCTATTTTGTTTTGATACTCATAAAATACACTCAGATAATA
TGCTTTACCGTCAATGAAAAAATGTTGAGGATTTTTAGGCTCTTTTGCTA
ATAAGTGATCAACCAATAATTCCTTTCTAGATTCTGTTGAAGACTTTGTA
AAAATGGATGTGAACTTTCTTACGATTGGCGAAGATTGTGAGTCGTAAAG
AGAACCTCCAACCAATCCGGATAACATTGATAAGATATACGGATTTGTGA
TCCGGGCATCTACTGTTCCGGTATCAAATAAATGTAAAGCAGTCAGAAAC
TCATTGAATGAATAATGAAGAAATTGGTACCGGGTACCCTCTATTGAATC
CGGGTAATCAATTTCGATAATTAAACCAGTATCATCCAACACTTCTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054395-exon-scaffold_242-1575043694:1321369..1321759 | TCONS_00054395-exon-scaffold_242-1575043694:1321369..1321759 | Clytia hemisphaerica | exon |
| TCONS_00054395-exon-scaffold_242-1575043694:1320011..1321310 | TCONS_00054395-exon-scaffold_242-1575043694:1320011..1321310 | Clytia hemisphaerica | exon |
| TCONS_00054395-exon-scaffold_242-1510915933:1321369..1321759 | TCONS_00054395-exon-scaffold_242-1510915933:1321369..1321759 | Clytia hemisphaerica | exon |
| TCONS_00054395-exon-scaffold_242-1510915933:1320011..1321310 | TCONS_00054395-exon-scaffold_242-1510915933:1320011..1321310 | Clytia hemisphaerica | exon |
| TCONS_00054395-exon-scaffold_242-1491911889:1321369..1321759 | TCONS_00054395-exon-scaffold_242-1491911889:1321369..1321759 | Clytia hemisphaerica | exon |
| TCONS_00054395-exon-scaffold_242-1491911889:1320011..1321310 | TCONS_00054395-exon-scaffold_242-1491911889:1320011..1321310 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:1320011..1321759 - |
Blast
The following BLAST results are available for this feature:
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