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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054267 ID=TCONS_00054267|Name=TCONS_00054267|organism=Clytia hemisphaerica|type=transcript|length=1238bp
GTCAGGAGTTTTCACTTTTTAAGATAATGTCATATAATATGATACAATTA
AAAATCTATATTAAAATGCTGTTAAAAtttaaatcaataaataaattaaa
taacttaaaaatctttatatataatcttttacaaaaaaattgattaagac
CCTGTCGTGAATTAAAGCGAAACCTTATTTGAATCAGGTATTTTCAGGTT
ATTCGAAGAGGGttttatcaaacaaatcatacattactaaaaatagacaa
aaagaacgacaatcttcaaatttcgccgtccacaactcCGACCAAAGTAC
CGCCGCTGTACCACCCCTAcggattcattcctctttgtttatcacgggaa
ttaactttAAAGTTAATGGTTTAagagaacgacaaattacgcatgcgtgt
tattaatgcaggaattgCAGGACGCGAAGATAAAAGTTACAATTTATACG
GACGACAGGAAGGCTTTGAGGaccctaaaacacccgatttcttaggaaaa
tggacaaaagttctcaaaaaatggcaaaaataagaatatttaaagaGAAA
CTTTAGgcataaaatttaaaagctaAGAACaccccaaggcttcaaaaatt
gtggatgttcttatttaaaaaaaaacgtgtattcatccGAGTCGCGGTCG
AACTTTAGTAACTTTGAGGGGAGGGCTTTTTAGATTAACAATTTGACAAG
TATGTCCTAGTCAGAAGTTAACCTTCCTCAGATGaactgtttttaaaaag
ttatcAATTTATATACCCTCAGCGGCACTTAACTGTCAAAACTTTAATTA
GtaagaatttttaataaaacgaGTTTTTActcccgccatcttgaattcgA
AATCAATCATTCATCTCTGATTCGTCGATAAATCATTTTCTTGTTCCGTA
CTTCACAAATGCAAAACTTTTTCATTCCTGAAAAACACTCCTGGTGTATT
ATAAGCATCTTTCCGCTGCTTTTCCAAGTCATACaggcaaaaataatttt
actgcTGCGCACGATCATAGCACAAACTTACCACCTAACAAACTGTAGTT
ACTTTGTCACCTACCGAGAGTTTTTTCACGATGAATTGGCGAAGGAAATG
TTTTACTTGGGATGAGAAAGGCAGATTTACTATATAAGTACAtcataaaa
caaacgatttcaATAGACGAATGAAATTTCGAAATGGTATGGCCGAATCT
TGACCACACCCATCATCTATTTGATTTAAAGTGTAGAA Run BLAST on NCBI transcript from alignment at scaffold_242:1441984..1443932+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054267 ID=TCONS_00054267|Name=TCONS_00054267|organism=Clytia hemisphaerica|type=transcript|length=1949bp|location=Sequence derived from alignment at scaffold_242:1441984..1443932+ (Clytia hemisphaerica)
GTCAGGAGTTTTCACTTTTTAAGATAATGTCATATAATATGATACAATTA
AAAATCTATATTAAAATGCTGTTAAAAtttaaatcaataaataaattaaa
taacttaaaaatctttatatataatcttttacaaaaaaattgattaagac
CCTGTCGTGAATTAAAGCGAAACCTTATTTGAATCAGGTATTTTCAGGTT
ATTCGAAGAGGGttttatcaaacaaatcatacattactaaaaatagacaa
aaagaacgacaatcttcaaatttcgccgtccacaactcCGACCAAAGTAC
CGCCGCTGTACCACCCCTAcggattcattcctctttgtttatcacgggaa
ttaactttAAAGTTAATGGTTTAagagaacgacaaattacgcatgcgtgt
tattaatgcaggaattgCAGGACGCGAAGATAAAAGTTACAATTTATACG
GACGACAGGAAGGCTTTGAGGaccctaaaacacccgatttcttaggaaaa
tggacaaaagttctcaaaaaatggcaaaaataagaatatttaaagaGAAA
CTTTAGgcataaaatttaaaagctaAGAACaccccaaggcttcaaaaatt
gtggatgttcttatttaaaaaaaaacgtgtattcatccGAGTCGCGGTCG
AACTTTAGTAACTTTGAGGGGAGGGCTTTTTAGATTAACAATTTGACAAG
TATGTCCTAGTCAGAAGTTAACCTTCCTCAGATGaactgtttttaaaaag
ttatcAATTTATATACCCTCAGCGGCACTTAACTGTCAAAACTTTAATTA
GtaagaatttttaataaaacgaGTTTTTActcccgccatcttgaattcgA
AATCAATCATTCATCTCTGATTCGTCGATAAATCATTTTCTTGTTCCGTA
CTTCACAAATGCAAAACTTTTTCATTCCTGAAAAACACTCCTGGTGTATT
ATAAGCATCTTTCCGCTGCTTTTCCAAGTCATACaggcaaaaataatttt
actgcTGCGCACGATCATAGCACAAACTTACCACCTAACAAACTGTAGTT
ACTTTGTCACCTACCGAGAGTTTTTTCACGATGAATTGGCGAAGGAAATG
TTTTACTTGGGATGAGAAAGGCCCATTTAGTATATAAGTACAtcataaaa
caaacgatttcaATAGACGAATGAAATTTCGAAATGGTATGGCCGAATCT
TGACCACATCCATCGTCAATTTGATTTAGAGTGTAGAAAGCCAAAACCTT
CTCATTCCCGGGGAAAATTTCATATTGCCACTTTACAACAGGAAACGTAG
GTACCATTCTGTGTTGTCAACGTATTTGTACtagacaaaaattatttttg
ccgGTATGCCCGTAAAAAACAGCGGAAGGATCCCTGAAATACGCCAAGAT
TGTTTTTTCCCAGGAATGANTAAAGTTATCAATTGATATACCCTCAGCGG
CACTTAACTGTCAAAACTTTAATTAGTAAGAACCTTTAATAAAACTAGTT
TTTActcccgccatcttgaattcgAAATCGATCATTCATCTCTGACTCGT
CGTTGAATCATTTTCTTGTTCTGTACTTTACAACGGCAAAACTTACTCAT
TCCTGAAAAACATTCCTGGCGTAATATAAGCATCTTTCCGCTGCTTTTCC
AAGTCATAcatgcaaaaataattttactgcTGCGCACGATCATAGCACAA
CGAAGAATATATAAGACCATAGGTCTATTGTCCTATGGTCTTACATATTC
TTGGCACAACCTTACCACcaagagttttgatttttttcacagtgaatTGG
CGAAGGAAATGTTTTATTTGGGATGAGAAAGGCAGATTTACTATATAAGT
ACAtcataaaacaaacgatttcaATAGACGAATGAAATTTCGAAATGGTA
TGGCCGAATCTTGACCACACCCATCATCTATTTGATTTAAAGTGTAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054267-exon-scaffold_242-1491911889:1441984..1443103 | TCONS_00054267-exon-scaffold_242-1491911889:1441984..1443103 | Clytia hemisphaerica | exon |
| TCONS_00054267-exon-scaffold_242-1510915933:1441984..1443103 | TCONS_00054267-exon-scaffold_242-1510915933:1441984..1443103 | Clytia hemisphaerica | exon |
| TCONS_00054267-exon-scaffold_242-1575043694:1441984..1443103 | TCONS_00054267-exon-scaffold_242-1575043694:1441984..1443103 | Clytia hemisphaerica | exon |
| TCONS_00054267-exon-scaffold_242-1491911889:1443815..1443932 | TCONS_00054267-exon-scaffold_242-1491911889:1443815..1443932 | Clytia hemisphaerica | exon |
| TCONS_00054267-exon-scaffold_242-1510915933:1443815..1443932 | TCONS_00054267-exon-scaffold_242-1510915933:1443815..1443932 | Clytia hemisphaerica | exon |
| TCONS_00054267-exon-scaffold_242-1575043694:1443815..1443932 | TCONS_00054267-exon-scaffold_242-1575043694:1443815..1443932 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:1441984..1443932 + |
Blast
The following BLAST results are available for this feature:
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