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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054270 ID=TCONS_00054270|Name=TCONS_00054270|organism=Clytia hemisphaerica|type=transcript|length=1691bpRun BLAST on NCBI transcript from alignment at scaffold_242:1526851..1537595+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054270 ID=TCONS_00054270|Name=TCONS_00054270|organism=Clytia hemisphaerica|type=transcript|length=10745bp|location=Sequence derived from alignment at scaffold_242:1526851..1537595+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00054270 vs. Swiss-Prot (Human)
Match: SVEP1 (Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Homo sapiens GN=SVEP1 PE=1 SV=3) HSP 1 Score: 104.375 bits (259), Expect = 5.527e-23 Identity = 75/278 (26.98%), Postives = 116/278 (41.73%), Query Frame = 2
Query: 47 LSCGDPGPIYNGTIIGKANFNNGGIIRYKCNKCYDRKGPSTLMCSRWGHWSGDVPKCLPKEC--PPLVVSDNEKTLTGKRYGFEYQFTCEAGTVLIGRAITRCMCNGRWSSKPPVCRVPMATVPPTTQPPIHEGYCPPPEPLHNGIIQAVRFGTEEKYQVCVVERRSSQAVRFGIEEKYQVGDRVYFLCNIRYRLIGPTYRECGWHGKWD-HDNPYCQIEYCSRLFPPIDGEVMGSNQVGS---FMEFRCHDGYTMVGANKTLCLRNGQWSKITPKCK 862
+ CG+P I NG G +N++ G ++ Y CNK + KG C G WS +P C P C PP V + + TG+ + E ++ C G +G + C N W S+ P+ VP+ C P P+ NG ++ E ++VG +V F CN Y L+G + C GKW+ NP C C PP+ + ++ + + F C +G+ + G + CL + QW+ P CK
Sbjct: 2144 VRCGEPPSIMNGYASG-SNYSFGAMVAYSCNKGFYIKGEKKSTCEATGQWSSPIPTCHPVSCGEPPKVENGFLEHTTGRIFESEVRYQCNPGYKSVGSPVFVCQANRHWHSESPLMCVPLD--------------CGKPPPIQNGFMKG---------------------------ENFEVGSKVQFFCNEGYELVGDSSWTCQKSGKWNKKSNPKCMPAKCPE--PPLLENQLVLKELTTEVGVVTFSCKEGHVLQGPSVLKCLPSQQWNDSFPVCK 2377 HSP 2 Score: 102.064 bits (253), Expect = 2.954e-22 Identity = 72/262 (27.48%), Postives = 102/262 (38.93%), Query Frame = 2
Query: 95 KANFNNGGIIRYKCNKCYDRKGPSTLMCSRWGHWSGDVPKCLPKECP-PLVVSDNEKTLTGKRYGFEYQFTCEAGTVLIGRAITRCMCNGRWSSKPPVCRVPMATVPPTTQPPIHEGYCPPPEPLHNGIIQAVRFGTEEKYQVCVVERRSSQAVRFGIEEKYQVGDRVYFLCNIRYRLIGPTYRECGWHGKWDHDNPYCQIEYCSRLFPPI--DGEVMGSN-QVGSFMEFRCHDGYTMVGANKTLCLRNGQWSKITPKCKPA 868
+NF G ++ Y CN Y+ G L+C G W+G P C+ EC P + T G Q++C+ G +L G + C+ N +WS P C C P P+ NG I+ Y +Y+ C+ Y L G R C WD D P C CS PP+ +G+V G +E+ C++G+ + GA +CL NG WS TP C P
Sbjct: 2672 SSNFLYGTMVSYTCNPGYELLGNPVLICQEDGTWNGSAPSCISIECDLPTAPENGFLRFTETSMGSAVQYSCKPGHILAGSDLRLCLENRKWSGASPRCEAIS---------------CKKPNPVMNGSIKG---------------------------SNYTYLSTLYYECDPGYVLNGTERRTCQDDKNWDEDEPICIPVDCSS--PPVSANGQVRGDEYTFQKEIEYTCNEGFLLEGARSRVCLANGSWSGATPDCVPV 2889 HSP 3 Score: 90.5077 bits (223), Expect = 1.184e-18 Identity = 77/278 (27.70%), Postives = 117/278 (42.09%), Query Frame = 2
Query: 47 LSCGDPGPIYNGTIIGKANFNNGGIIRYKCNKCYDRKGPSTLMCSRWGHWSGDV-PKCLPKECPPLVVSDNEKTLTGKRYGFEY---QFTCEAGTVLIGRAITRCMCNGRWSSKPPVCRVPMATVPPTTQPPIHEGYCPPPEPLHNGIIQAVRFGTEEKYQVCVVERRSSQAVRFGIEEKYQVGDRVYFLCNIRYRLIGPTYRECGWHGKWDHDNPYCQIEYCSRLFPPIDG--EVMGSNQVGSFMEFRCHDGYTMVGANKTLCLRNGQWSKITPKCK 862
L CG P PI NG + G+ NF G +++ CN+ Y+ G S+ C + G W+ PKC+P +CP + +N+ L K E F+C+ G VL G ++ +C+ + +W+ PVC++ + T PP + FG S A+ FG KY C + L G + C G W P C C + +G +V G + + + + C G+ +VG TLC NG W P CK
Sbjct: 2262 LDCGKPPPIQNGFMKGE-NFEVGSKVQFFCNEGYELVGDSSWTCQKSGKWNKKSNPKCMPAKCPEPPLLENQLVL--KELTTEVGVVTFSCKEGHVLQGPSVLKCLPSQQWNDSFPVCKIVLCTPPPL-----------------------ISFGVP----------IPSSALHFGSTVKYS--------CVGGFFLRGNSTTLCQPDGTWSSPLPECVPVECPQPEEIPNGIIDVQGLAYLSTAL-YTCKPGFELVGNTTTLCGENGHWLGGKPTCK 2494 HSP 4 Score: 88.9669 bits (219), Expect = 3.038e-18 Identity = 84/351 (23.93%), Postives = 127/351 (36.18%), Query Frame = 2
Query: 44 VLSCGDPGPIYNGTIIGKANFNNGGIIRYKCNKCYDRKGPSTLMCSRWGHWSGDVPKCLPKECPPLVVSDNEKTLTGKRYGF--EYQFTCEAGTVLIGRAITRCMCNGRWSSKPPVCRVPMATVPPTTQPPI----------------HEGY---------------------------CPPPEPLHNGIIQAVRF--GTEEKYQ--------------------------VCVVERRSSQAVRFGIEE--KYQVGDRVYFLCNIRYRLIGPTYRECGWHGKWDHDNPYCQIEYCSRLFPPIDGEVMG--SNQVGSFMEFRCHDGYTMVGANKTLCLRNGQWSKITPKCKP 865
+SC P P+ NG+I G +N+ + Y+C+ Y G C +W D P C+P +C VS N + + G Y F E ++TC G +L G C+ NG WS P C PP + HEGY C PPE L +G F G +YQ C+ R S+ + +G + G C ++L+G + C G+W P+C+ C L P I + S+ + + + C GY + G++ +C G WS+ P C+P
Sbjct: 2772 AISCKKPNPVMNGSIKG-SNYTYLSTLYYECDPGYVLNGTERRTCQDDKNWDEDEPICIPVDCSSPPVSANGQ-VRGDEYTFQKEIEYTCNEGFLLEGARSRVCLANGSWSGATPDCVPVRCATPPQLANGVTEGLDYGFMKEVTFHCHEGYILHGAPKLTCQSDGNWDAEIPLCKPVNCGPPEDLAHGFPNGFSFIHGGHIQYQCFPGYKLHGNSSRRCLSNGSWSGSSPSCLPCRCSTPVIEYGTVNGTDFDCGKAARIQCFKGFKLLGLSEITCEADGQWSSGFPHCEHTSCGSL-PMIPNAFISETSSWKENVITYSCRSGYVIQGSSDLICTEKGVWSQPYPVCEP 3119 HSP 5 Score: 87.8113 bits (216), Expect = 8.207e-18 Identity = 75/293 (25.60%), Postives = 112/293 (38.23%), Query Frame = 2
Query: 44 VLSCGDPGPIYNGTIIGKANFNNGGIIRYKCNKCYDRKGPSTLMCSRWGHWSGDVPKCLPKEC-PPLVVSDNEKTLTGKRYGFEYQFTCEAGTVLIGRAITRCMCNGRWSSKPPVCRVPMATVPPT------TQPPIHEG------------YCPPPEPLHNGIIQAVRFGTEEKYQVCVVERRSSQAVRFGIEEKYQVGDRVYFLCNIRYRLIGPTYRECGWHGKWDHDNPYCQIEYCSRLFPPIDGEV-MGSNQVGSFMEFRCHDGYTMVGANKTLCLRNGQWSKITPKCK 862
+ C P I NG + + G + Y CN+ + +GPS L C G W D P C C P + + YG ++C G + G A+ C +G WSS P C +PP T+ +G Y P P H G + T+E S A + G V + CN Y L+G C G W+ P C C P +G + +GS +++ C G+ + G++ LCL N +WS +P+C+
Sbjct: 2495 AIECLKPKEILNGKF-SYTDLHYGQTVTYSCNRGFRLEGPSALTCLETGDWDVDAPSCNAIHCDSPQPIENGFVEGADYSYGAIIIYSCFPGFQVAGHAMQTCEESG-WSSSIPTCMPIDCGLPPHIDFGDCTKLKDDQGYFEQEDDMMEVPYVTPHPPYHLGAVAKTWENTKE-----------SPATH---SSNFLYGTMVSYTCNPGYELLGNPVLICQEDGTWNGSAPSCISIECDLPTAPENGFLRFTETSMGSAVQYSCKPGHILAGSDLRLCLENRKWSGASPRCE 2771 The following BLAST results are available for this feature:
BLAST of TCONS_00054270 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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