TCONS_00054282 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054282
Unique NameTCONS_00054282
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1499

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054282 ID=TCONS_00054282|Name=TCONS_00054282|organism=Clytia hemisphaerica|type=transcript|length=1499bp
TGCAACACTCTAAAACACTTAATATTATTGCTGGTTTGGGAAATCATTTT
GCAAAGCACAGTCGTCACAGTGTTGGCATGCGAATATGCGATTCGTTAGC
CAAGAAACATAACTTATCATGGTCTtatgaaagaaaatataaagccTTCA
CAACAGCTTTGTCTGTGCAAGATCACCAATTTATCTTGTTCAAATCAAAA
TGGCCAATGAATTTGAATGGAAGAAGTCTTGAAAAAATAGTTTCAGACTT
GTCTGTAGACATCAACAAGGTCACAGTGTTACATGATGAACTTGATCGAA
ACCTTGGAAAATGTCGCTGGAAACTTGAAGGGAGTGCCAATGGACACAAT
GGTGTGAAATCAGTCATACAATCCCTCAAAACTGATAAATTTCGTCGTTT
ACGCATCGGTATCGGTCGACCGATCAACAAATCGGACGTGGTGGATTACG
TTTTGTCTGATTTTACGGCAGCCGAAGAACAAGAGTTTTTTGAGGTGGCA
ACCAGGTGTATAGAGATGTTACGGATGGATGTTTTCCCTGATGAAGTTGT
AGAGGTTGGTCAAAAGGAGGCGAGAATAGTTGTCGAGGGAGATGGGGATA
AAGACGATACGATCAAAGATTCCTGATAAGGTATGAGATACGATTGTTTG
ATTTTGCATTGATTAAAACATTCCTCGATGTTCTGTTTCGCATGTTTTGC
AATAACAATCATAACGATCTGCCAAGTTTAGACTGGAcctttattttgat
tatttttgtggTGATCGTTTTCCAGTATTGAGATGAGTCGCACTTGATCG
CATTTGATACTTTCTATCCTGTTATCTTGGACGTGTGGTAGTATATGCTT
TGTTGATTGAGCTACTTTTAAAACTCTATGTTCGGTTTTCATGAAAGGAA
AAgctgtttttattcaaagacTTTACCCTAAAATTAAAATCGTTTCGCCA
TCAAGCTGTTAGCAAGGAAGATTTTGTCGAGAAGACTTTTATTTTTGGAT
GAGAAACCCATCTTGTCAACGTGGAAAATTTTTCAAGGACTTcatatttc
ataattttggaATCCATCTGTCTGACAGCAGTAGTATTGCAgtattataa
aaacaatttcatttccaCGTGAACCAAAAGCATGGTTTTTGTGACATTTA
CAGTAGCAGCTTTCGTTCTAACAGGCGTAGGTACCGGCATTTTATCATGT
GCTTTATACGGGCTCTTAAAACAATTCAATGATTTGGAGTGCGAAATGGA
GAGACGTTCGACTTCTTGGAAAATCTCTCAAGGTGCTTAGAACAATGCCT
AATGAATTGGGAATTATTTGAGACATTTTGCAATATACCCTAAGTTTGAT
TATATCTCATAATGCAAATTTCTACTATATTTGCAACCTAATCCATGAAT
GGTTGTTGATTTACGATACCATTGATTTTGTATATATTTGAAAGAGAATT
GCTaagtttttcatcattttgttaaATGAAAGTTTAATCACAGTTGGGT
Run BLAST on NCBI

transcript from alignment at scaffold_242:1581341..1585347+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054282 ID=TCONS_00054282|Name=TCONS_00054282|organism=Clytia hemisphaerica|type=transcript|length=4007bp|location=Sequence derived from alignment at scaffold_242:1581341..1585347+ (Clytia hemisphaerica)
TGCAACACTCTAAAACACTTAATATTGTaagtatttcctttttttttgct
tttgttttttttcatgtaTACAAATCCAGGATATGTTTATCAAACCTTGC
TTGCATTTGGCAACAAAGCaatctttattatttttgtcattcaTTTTTAC
AATTGAAACTTTTGCTATGGTTAAGGGTTTTAAATTTACTGTATTCAAAA
CGCGTTTATACACACACAGAATTCTTAGGTTCATCAGGTGTCGTATGGTT
GGTTAGGCTaagtcatatcttccttcgttttcagcgtaaaactcctactc
ttcgggatatgcgcACTGTTCTTGTTTTTAATTGAATTTCTCCGTATaga
tcgcatgcgcactgaggttttgatgaaacaatagagagtttggAAACCCA
ATTCCAATTAGCTGTGTTTtgaacattcttttattttaaatctctatgat
aaacatcttttgtttaTGTATAATTTCTATAATGTTTGAATCCTATTAAA
AAGCGAATTCTTGGCACCATAGCAGTGCCTATATACCAaaagtaaggcct
aaaagcctggagcgtTAATTTGTGTAGACTAATGCTTGGTTAACAGGAAC
CAATAAACTTTGGAATTTCTTTTACCTTTATTTAGATTGCTGGTTTGGGA
AATCATTTTGCAAAGCACAGTCGTCACAGTGTTGGCATGCGAATATGCGA
TTCGTTAGCCAAGAAACATAACTTATCATGGTCTtatgaaagaaaatata
aagccTTCACAACAGCTTTGTCTGTGCAAGATCACCAATTTATCTTGTTC
AAATCAAAATGGCCAATGAATTTGAATGGAAGAAGTCTTGAAAAAATAGG
TATAAGCTAGCCCATGAAATTGACAAAACTATTTAGTTGATATACAGAAA
TAATTTAGAATGTTGGAAGGCTCGATGAGAGTAGTAGTCAAGCTAACAAA
ATTACACGAATCTGAATCTGTCAAGAAGGATAGTAACATCGATACAAATA
Ctaaattaaagtctatttcaaattagctggcagtcttttttcaaacctca
ataactcttgatagaattttaattaattagcgattttgtgctcgttggaA
AGATTATCAGGAGTGGAATatgattataataaaaaaatcgatgaaatatc
taaaatgaagaagaaaaacgaaaaagaaactttttgtctATTTATGCTAT
GGACATGGCTATggctaaaaaaattgaaaaatattcttgtaATCGGAAGA
TTTAAATGAGTTAGAATTAAATGGGTAAACAATAAGTACAATTATGACCA
CAAGTAATTTTATGTTCAACTTTTGTTTGCAGTTTCAGACTTGTCTGTAG
ACATCAACAAGGTCACAGTGTTACATGATGAACTTGATCGAAACCTTGGA
AAATGTCGCTGGAAACTTGAAGGGAGTGCCAAGTAAGTTTTTTTCTTACT
GCTAGAATATTGAAACGacatgaaaaagtcaaaaatgcgTTCTAGGGTAC
TCGGACCATACTAAAGACGTTTaagttgttttcttttttattttggtatC
AAATTCAAGATATAAATGCCTGGTACACACCAAATATTCACACCAAATTC
CTAGAAGAGCCATTATCATATTTTCTTTCAGTGGACACAATGGTGTGAAA
TCAGTCATACAATCCCTCAAAACTGATGtgagttttcaattttttttttc
ttcaattttacgAATATTGGTATAATGGACACCAGATTCGTTCTGGACTA
TAGTAAAACCTATCATATAATGTTAAAATTGTATTCTCGGTCTTCAGTTA
GGAACGTTTATGAAATCTTTGCCAATAAATATACAAACAATGATAACTAC
AAAAGTCTCTTCTATTGAATTTAAACAGTTTTAGATTTCTACTTTGTTAT
TAGAAATTTCGTCGTTTACGCATCGGTATCGGTCGACCGATCAACAAATC
GGACGTGGTGGATTACGTTTTGTCTGATTTTACGGCAGCCGAAGAACAAG
AGTTTTTTGAGGTGGCAACCAGGTGTATAGAGATGTTACGGATGGATGTT
TTCCCTGATGAAGTTGTAGAGGTTGGTCAAAAGGAGGCGAGAATAGTTGT
CGAGGGAGATGGGGATAAAGACGATACGATCAAAGATTCCTGATAAGGTT
AGctcttttttttcatgtttagtCTCACTGGTAGAAttaacttgaaattt
cattgaaacttggacaaaatttcaatgagCTGTAATTTGTCTTTAGCTGT
CGCTAATAAGATGACAACAATAAAGGTGATGTAGTTAAATGTGTTACCCA
CCTTGGGAAACTCTAGCTGTCTCTAATAGAATCACTGACTACCAAAAAAG
AGCCCCGTCGATAGATTTTCtgatcgaaaattgaaaaagagtcgaaaagt
cttttttataccACCACCAGGACTAGATGAGCGTTTTGATATTAATGCAG
TTATCTAGTTTTAACTCCTTGAAAGATGTCAGAACTACCAAATTAGATTC
TTAAGCTTTTTTCCCATTGGTGCATCGAGGGTGGGCTTTTTTTCGGAGGT
TCTCTAAGGCGCTAATAAATTCTACTGGACTATTTATGTTATGATTGGAA
TAGTCAATTGAGATGCTTGCTGTAAACAATTATACCATGATNAAATATGT
TATGATATGCATAGTCAATTGAGATGCTTACTGTAAACAATTATACCATG
ATTCAATCAGGAAGTGAGAAGTGTTGTCTATCTCGAACTCTGGACTGAAG
TTTCTGTCTAAGATTTAATGTTTTACGTTTTATACGGGATGGTTCAGGCA
AGAACTCTGTATGAGACCTGCAACGAATAAATTATTGTGGGCAATGATGT
GGCCGACCACACTTGCAGTAAATCTTTTTTACTCAAACCTAAAATTGGAA
TGAATGATGAATGTGTGAAAATGTATTCATGGCTTACACAAGAAATATAG
GACCAGAGTATCTTTCCCTTAAGCCTTCGATATGATTTGCTTGAATATGA
TGGAAAAACATCTTAAATATTTCATGTGAGAATATTCGAAGTAATGAATA
TTTTACATAACCTAAGCATCAAGCATTATACTGGCTAAtgaatatttcat
ttttcttctttcaaaaagTCTGCACTTTTCAATCAAAGGTATGAGATACG
ATTGTTTGATTTTGCATTGATTAAAACATTCCTCGATGTTCTGTTTCGCA
TGTTTTGCAATAACAATCATAACGATCTGCCAAGTTTAGACTGGAccttt
attttgattatttttgtggTGATCGTTTTCCAGTATTGAGATGAGTCGCA
CTTGATCGCATTTGATACTTTCTATCCTGTTATCTTGGACGTGTGGTAGT
ATATGCTTTGTTGATTGAGCTACTTTTAAAACTCTATGTTCGGTTTTCAT
GAAAGGAAAAgctgtttttattcaaagacTTTACCCTAAAATTAAAATCG
TTTCGCCATCAAGCTGTTAGCAAGGAAGATTTTGTCGAGAAGACTTTTAT
TTTTGGATGAGAAACCCATCTTGTCAACGTGGAAAATTTTTCAAGGACTT
catatttcataattttggaATCCATCTGTCTGACAGCAGTAGTATTGCAg
tattataaaaacaatttcatttccaCGTGAACCAAAAGCATGGTTTTTGT
GACATTTACAGTAGCAGCTTTCGTTCTAACAGGCGTAGGTACCGGCATTT
TATCATGTGCTTTATACGGGCTCTTAAAACAATTCAATGATTTGGAGTGC
GAAATGGAGAGACGTTCGACTTCTTGGAAAATCTCTCAAGGTGCTTAGAA
CAATGCCTAATGAATTGGGAATTATTTGAGACATTTTGCAATATACCCTA
AGTTTGATTATATCTCATAATGCAAATTTCTACTATATTTGCAACCTAAT
CCATGAATGGTTGTTGATTTACGATACCATTGATTTTGTATATATTTGAA
AGAGAATTGCTaagtttttcatcattttgttaaATGAAAGTTTAATCACA
GTTGGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034236XLOC_034236Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054282-exon-scaffold_242-1491911889:1581341..1581366TCONS_00054282-exon-scaffold_242-1491911889:1581341..1581366Clytia hemisphaericaexon
TCONS_00054282-exon-scaffold_242-1510915933:1581341..1581366TCONS_00054282-exon-scaffold_242-1510915933:1581341..1581366Clytia hemisphaericaexon
TCONS_00054282-exon-scaffold_242-1575043694:1581341..1581366TCONS_00054282-exon-scaffold_242-1575043694:1581341..1581366Clytia hemisphaericaexon
TCONS_00054282-exon-scaffold_242-1491911889:1581976..1582189TCONS_00054282-exon-scaffold_242-1491911889:1581976..1582189Clytia hemisphaericaexon
TCONS_00054282-exon-scaffold_242-1510915933:1581976..1582189TCONS_00054282-exon-scaffold_242-1510915933:1581976..1582189Clytia hemisphaericaexon
TCONS_00054282-exon-scaffold_242-1575043694:1581976..1582189TCONS_00054282-exon-scaffold_242-1575043694:1581976..1582189Clytia hemisphaericaexon
TCONS_00054282-exon-scaffold_242-1491911889:1582673..1582772TCONS_00054282-exon-scaffold_242-1491911889:1582673..1582772Clytia hemisphaericaexon
TCONS_00054282-exon-scaffold_242-1510915933:1582673..1582772TCONS_00054282-exon-scaffold_242-1510915933:1582673..1582772Clytia hemisphaericaexon
TCONS_00054282-exon-scaffold_242-1575043694:1582673..1582772TCONS_00054282-exon-scaffold_242-1575043694:1582673..1582772Clytia hemisphaericaexon
TCONS_00054282-exon-scaffold_242-1491911889:1582972..1583017TCONS_00054282-exon-scaffold_242-1491911889:1582972..1583017Clytia hemisphaericaexon
TCONS_00054282-exon-scaffold_242-1510915933:1582972..1583017TCONS_00054282-exon-scaffold_242-1510915933:1582972..1583017Clytia hemisphaericaexon
TCONS_00054282-exon-scaffold_242-1575043694:1582972..1583017TCONS_00054282-exon-scaffold_242-1575043694:1582972..1583017Clytia hemisphaericaexon
TCONS_00054282-exon-scaffold_242-1491911889:1583244..1583487TCONS_00054282-exon-scaffold_242-1491911889:1583244..1583487Clytia hemisphaericaexon
TCONS_00054282-exon-scaffold_242-1510915933:1583244..1583487TCONS_00054282-exon-scaffold_242-1510915933:1583244..1583487Clytia hemisphaericaexon
TCONS_00054282-exon-scaffold_242-1575043694:1583244..1583487TCONS_00054282-exon-scaffold_242-1575043694:1583244..1583487Clytia hemisphaericaexon
TCONS_00054282-exon-scaffold_242-1491911889:1584479..1585347TCONS_00054282-exon-scaffold_242-1491911889:1584479..1585347Clytia hemisphaericaexon
TCONS_00054282-exon-scaffold_242-1510915933:1584479..1585347TCONS_00054282-exon-scaffold_242-1510915933:1584479..1585347Clytia hemisphaericaexon
TCONS_00054282-exon-scaffold_242-1575043694:1584479..1585347TCONS_00054282-exon-scaffold_242-1575043694:1584479..1585347Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1581341..1585347 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.12828	0.970464	1.54518	1.15602	0.436644	0.246459	0.763839	0.769109	1.65203	1.06875	0.681039	0.790325	3.18889	2.87082	4.61761	3.71719	2.15951	2.07847	0.295022	0.213235	3.21606	3.43406	2.14716	2.58878	0.533773	1.02277	1.42993	0.852419	0	0.156921
Blast
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BLAST of TCONS_00054282 vs. Swiss-Prot (Human)
Match: PTH (Probable peptidyl-tRNA hydrolase OS=Homo sapiens GN=PTRH1 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 7.673e-32
Identity = 62/168 (36.90%), Postives = 96/168 (57.14%), Query Frame = 3 
Query:   24 IIAGLGNHFAKHSRHSVGMRICDSLAKKHNL--SWSYERKYKAFTTALSVQDHQFILFKSKWPMNLNGRSLEKIVSDLSVDINKVTVLHDELDRNLGKCRWKLEGSANGHNGVKSVIQSLKTDKFRRLRIGIGRPINKSDVVDYVLSDFTAAEEQEFFEVATRCIEML 521
            ++AGLGN     +RHSVGM +   LA++  +  SW+ +R   A      + D Q +L + +  MN NGRS+ +      +   +V ++HDELD+ LG+   KL GSA GHNGV+S I  L ++   RLR+GIGRP +   V  +VL  F+ AE++    +  R  +++
Sbjct:   32 MVAGLGNPGLPGTRHSVGMAVLGQLARRLGVAESWTRDRHCAADLALAPLGDAQLVLLRPRRLMNANGRSVARAAELFGLTAEEVYLVHDELDKPLGRLALKLGGSARGHNGVRSCISCLNSNAMPRLRVGIGRPAHPEAVQAHVLGCFSPAEQELLPLLLDRATDLI 199
The following BLAST results are available for this feature:
BLAST of TCONS_00054282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PTH7.673e-3236.90Probable peptidyl-tRNA hydrolase OS=Homo sapiens G... [more]
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